Wall clock time and date at job start Tue Mar 31 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00072 * 2 1 4 4 O 1.21285 * 120.00003 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00120 * 0.02562 * 3 2 1 6 6 O 1.42901 * 109.47208 * 179.97438 * 5 3 2 7 7 C 1.42905 * 113.99729 * 180.02562 * 6 5 3 8 8 C 1.50699 * 109.46950 * 180.02562 * 7 6 5 9 9 C 1.38839 * 120.75237 * 269.97546 * 8 7 6 10 10 C 1.38047 * 119.28745 * 180.02562 * 9 8 7 11 11 N 1.31967 * 120.83228 * 359.73005 * 10 9 8 12 12 C 1.32252 * 121.65092 * 0.56077 * 11 10 9 13 13 O 1.35675 * 119.68646 * 179.71451 * 12 11 10 14 14 C 1.38371 * 120.76056 * 89.99466 * 8 7 6 15 15 C 1.46504 * 120.00302 * 179.97438 * 2 1 3 16 16 C 1.53786 * 113.61100 * 37.49743 * 15 2 1 17 17 C 1.53774 * 87.08233 * 220.02106 * 16 15 2 18 18 N 1.46501 * 113.61143 * 270.88567 * 17 16 15 19 19 C 1.36940 * 119.99662 * 252.49208 * 18 17 16 20 20 H 1.07995 * 120.00318 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99712 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00125 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46901 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47456 * 119.99688 * 23 21 19 26 26 H 1.48500 * 109.47223 * 239.99796 * 23 21 19 27 27 C 1.53776 * 113.61443 * 300.00376 * 15 2 1 28 28 H 1.08993 * 109.47145 * 89.99729 * 1 2 3 29 29 H 1.09000 * 109.46932 * 209.99984 * 1 2 3 30 30 H 1.09002 * 109.46781 * 329.99761 * 1 2 3 31 31 H 1.09002 * 109.47358 * 59.99741 * 5 3 2 32 32 H 1.09001 * 109.47345 * 300.00322 * 5 3 2 33 33 H 1.09000 * 109.47176 * 59.99824 * 7 6 5 34 34 H 1.09003 * 109.46930 * 299.99814 * 7 6 5 35 35 H 1.07992 * 120.35413 * 0.02562 * 9 8 7 36 36 H 1.08001 * 119.58252 * 179.97438 * 10 9 8 37 37 H 0.96701 * 113.99703 * 269.72988 * 13 12 11 38 38 H 1.07994 * 120.44689 * 359.95868 * 14 8 7 39 39 H 1.08999 * 112.85399 * 168.79931 * 15 2 1 40 40 H 1.09003 * 113.61298 * 334.56832 * 16 15 2 41 41 H 1.09001 * 113.61339 * 105.47013 * 16 15 2 42 42 H 1.08993 * 113.61748 * 139.97951 * 17 16 15 43 43 H 0.97001 * 120.00098 * 72.50146 * 18 17 16 44 44 H 0.96998 * 120.00009 * 180.02562 * 22 21 19 45 45 H 1.08998 * 113.61187 * 254.52805 * 27 15 2 46 46 H 1.08999 * 113.61583 * 25.42658 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4723 0.0006 6 8 2.3141 3.5584 0.0011 7 6 1.6995 4.8486 0.0022 8 6 2.7662 5.9131 0.0020 9 6 3.2692 6.4143 1.1951 10 6 4.2456 7.3895 1.1596 11 7 4.7066 7.8436 0.0094 12 6 4.2486 7.3951 -1.1474 13 8 4.7471 7.8942 -2.3064 14 6 3.2663 6.4136 -1.1871 15 6 2.1976 -1.2687 0.0006 16 6 1.5374 -2.3616 -0.8567 17 6 1.9129 -3.3524 0.2577 18 7 3.2397 -3.9502 0.0888 19 6 3.3569 -5.2617 -0.2873 20 1 2.4713 -5.8552 -0.4599 21 6 4.6140 -5.8283 -0.4469 22 7 5.6934 -5.1049 -0.2371 23 14 4.7739 -7.6172 -0.9606 24 1 3.4213 -8.2055 -1.1327 25 1 5.5168 -7.6992 -2.2438 26 1 5.5107 -8.3690 0.0868 27 6 1.8954 -2.1540 1.2211 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7591 2.5299 0.8908 32 1 0.7584 2.5303 -0.8891 33 1 1.0796 4.9549 0.8925 34 1 1.0791 4.9562 -0.8875 35 1 2.9006 6.0452 2.1406 36 1 4.6400 7.7831 2.0848 37 1 4.2673 8.6639 -2.6416 38 1 2.8979 6.0461 -2.1335 39 1 3.2625 -1.1427 -0.1946 40 1 0.4624 -2.2299 -0.9799 41 1 2.0528 -2.5482 -1.7989 42 1 1.1382 -4.0906 0.4649 43 1 4.0351 -3.4171 0.2435 44 1 6.5719 -5.5007 -0.3489 45 1 2.6998 -2.1730 1.9565 46 1 0.9183 -1.9656 1.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571658824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:48 Heat of formation + Delta-G solvation = -33.048668 kcal Electronic energy + Delta-G solvation = -27650.468219 eV Core-core repulsion = 23542.581387 eV Total energy + Delta-G solvation = -4107.886832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87354 -40.20588 -38.61332 -37.71488 -37.15717 -34.86662 -33.62674 -32.99179 -30.65174 -29.98433 -28.75572 -27.13583 -26.72070 -25.12993 -24.20028 -23.87468 -22.66844 -22.48618 -19.74972 -18.86315 -18.28082 -17.70357 -17.46865 -17.22027 -16.76889 -16.50397 -16.36012 -16.06367 -15.86548 -15.05327 -14.84201 -14.68606 -14.39342 -13.94076 -13.52676 -13.39450 -13.33395 -13.05297 -12.76587 -12.69235 -12.44136 -12.24463 -12.14690 -12.02672 -11.98679 -11.89972 -11.52155 -10.88903 -10.76602 -10.28410 -10.24210 -10.14744 -10.13579 -9.85681 -9.82640 -9.69555 -9.49609 -9.32309 -8.92155 -8.45989 -7.01617 -5.79162 -3.09840 0.60188 0.67033 2.62249 2.64773 3.11317 3.32258 3.42490 3.47438 3.50462 3.70789 4.17824 4.22274 4.49211 4.55663 4.58769 4.64065 4.69161 4.70988 4.86642 4.88120 4.98725 5.08968 5.10688 5.11965 5.28779 5.36110 5.39092 5.44659 5.47899 5.54830 5.81233 5.85242 5.96572 6.05312 6.08695 6.19229 6.38181 6.46661 6.64996 6.69573 6.76575 7.01083 7.08831 7.47156 7.51899 7.69026 8.24149 8.38617 9.49369 10.05839 10.39674 11.42852 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.001865 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.597873 B =15011.731326 C =15930.997951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.508 3.492 4 O -0.514 6.514 5 C 0.046 3.954 6 O -0.354 6.354 7 C 0.099 3.901 8 C -0.029 4.029 9 C -0.160 4.160 10 C 0.122 3.878 11 N -0.500 5.500 12 C 0.308 3.692 13 O -0.480 6.480 14 C -0.163 4.163 15 C 0.126 3.874 16 C -0.182 4.182 17 C 0.173 3.827 18 N -0.706 5.706 19 C -0.246 4.246 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.928 5.928 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.168 4.168 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.400 0.600 38 H 0.143 0.857 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.071 0.929 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.430 26.452 1.601 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.337 5.337 3 C 0.294 3.706 4 O -0.388 6.388 5 C -0.034 4.034 6 O -0.272 6.272 7 C 0.023 3.977 8 C -0.037 4.037 9 C -0.180 4.180 10 C -0.035 4.035 11 N -0.220 5.220 12 C 0.129 3.871 13 O -0.287 6.287 14 C -0.184 4.184 15 C 0.024 3.976 16 C -0.224 4.224 17 C 0.059 3.941 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.576 5.576 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.209 4.209 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.257 0.743 38 H 0.161 0.839 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.499 26.404 1.527 30.162 hybrid contribution -0.889 -0.934 -0.407 1.352 sum -15.388 25.470 1.120 29.779 Atomic orbital electron populations 1.21776 0.80096 1.03125 1.01887 1.47921 1.06663 1.05922 1.73184 1.20155 0.88241 0.84738 0.77429 1.90774 1.13611 1.86852 1.47604 1.22326 0.92095 0.86551 1.02393 1.88126 1.31519 1.12131 1.95431 1.21354 0.92690 0.81873 1.01813 1.19855 0.96252 0.94766 0.92872 1.22122 0.98722 0.98163 0.98948 1.22543 0.92694 0.93165 0.95053 1.67163 1.27041 1.29170 0.98578 1.19131 0.89948 0.92693 0.85287 1.84827 1.59004 1.50425 1.34449 1.22043 0.97359 0.99308 0.99682 1.22791 0.97817 0.79207 0.97799 1.24317 0.99342 0.97636 1.01074 1.20895 0.89934 0.91265 0.91966 1.42230 1.00989 1.10493 1.80693 1.19306 0.92368 0.87212 1.38832 0.90862 1.24808 0.95427 0.98347 1.02246 1.69684 0.97115 1.35580 1.55201 0.86092 0.77450 0.84621 0.77826 1.20493 1.21807 1.21817 1.23969 1.01440 0.97758 0.97695 0.92424 0.90213 0.91621 0.90191 0.90199 0.91393 0.91560 0.84000 0.81860 0.74295 0.83933 0.86365 0.90972 0.90898 0.91360 0.77898 0.93367 0.91035 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 8.85 59.85 0.53 1.15 16 2 N -0.60 -8.08 3.08 -173.00 -0.53 -8.61 16 3 C 0.51 7.59 7.75 -10.99 -0.09 7.50 16 4 O -0.51 -10.54 15.98 -14.36 -0.23 -10.77 16 5 C 0.05 0.45 4.97 36.00 0.18 0.63 16 6 O -0.35 -4.24 9.86 -55.14 -0.54 -4.79 16 7 C 0.10 0.74 6.11 36.01 0.22 0.96 16 8 C -0.03 -0.26 5.54 -104.35 -0.58 -0.84 16 9 C -0.16 -1.27 9.81 -39.43 -0.39 -1.66 16 10 C 0.12 1.04 11.18 -17.56 -0.20 0.85 16 11 N -0.50 -5.51 10.39 -13.33 -0.14 -5.64 16 12 C 0.31 3.18 7.75 -17.12 -0.13 3.05 16 13 O -0.48 -4.34 13.56 -18.73 -0.25 -4.59 16 14 C -0.16 -1.50 9.75 -39.28 -0.38 -1.88 16 15 C 0.13 2.12 4.08 -67.12 -0.27 1.84 16 16 C -0.18 -3.03 7.30 -25.92 -0.19 -3.22 16 17 C 0.17 3.33 4.56 -67.12 -0.31 3.03 16 18 N -0.71 -17.71 5.31 -52.64 -0.28 -17.99 16 19 C -0.25 -6.80 9.97 -15.06 -0.15 -6.95 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 C -0.17 -2.76 7.36 -25.92 -0.19 -2.95 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.64 6.34 -51.93 -0.33 0.31 16 30 H 0.07 0.36 6.44 -51.93 -0.33 0.02 16 31 H 0.08 0.53 7.40 -51.93 -0.38 0.15 16 32 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 34 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.40 1.33 9.06 45.56 0.41 1.74 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.12 2.46 7.23 -51.93 -0.38 2.08 16 40 H 0.07 0.97 6.72 -51.93 -0.35 0.62 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 43 H 0.39 10.52 7.90 -40.82 -0.32 10.20 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.08 1.03 6.92 -51.93 -0.36 0.67 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -38.62 387.75 -8.28 -46.90 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.81 Total: 8.92 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.04 Total: 1.07 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.23 Total: -59.95 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.03 Total: -20.15 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.62 -8.28 -46.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571658824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.848 kcal (2) G-P(sol) polarization free energy of solvation -38.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds