Wall clock time and date at job start Tue Mar 31 2020 18:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00072 * 2 1 4 4 O 1.21285 * 120.00003 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.00120 * 0.02562 * 3 2 1 6 6 O 1.42901 * 109.47208 * 179.97438 * 5 3 2 7 7 C 1.42905 * 113.99729 * 180.02562 * 6 5 3 8 8 C 1.50699 * 109.46950 * 180.02562 * 7 6 5 9 9 C 1.38839 * 120.75237 * 269.97546 * 8 7 6 10 10 C 1.38047 * 119.28745 * 180.02562 * 9 8 7 11 11 N 1.31967 * 120.83228 * 359.73005 * 10 9 8 12 12 C 1.32252 * 121.65092 * 0.56077 * 11 10 9 13 13 O 1.35675 * 119.68646 * 179.71451 * 12 11 10 14 14 C 1.38371 * 120.76056 * 89.99466 * 8 7 6 15 15 C 1.46504 * 120.00302 * 179.97438 * 2 1 3 16 16 C 1.53786 * 113.61100 * 37.49743 * 15 2 1 17 17 C 1.53774 * 87.08233 * 220.02106 * 16 15 2 18 18 N 1.46501 * 113.61143 * 270.88567 * 17 16 15 19 19 C 1.36940 * 119.99662 * 252.49208 * 18 17 16 20 20 H 1.07995 * 120.00318 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99712 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00125 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46901 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47456 * 119.99688 * 23 21 19 26 26 H 1.48500 * 109.47223 * 239.99796 * 23 21 19 27 27 C 1.53776 * 113.61443 * 300.00376 * 15 2 1 28 28 H 1.08993 * 109.47145 * 89.99729 * 1 2 3 29 29 H 1.09000 * 109.46932 * 209.99984 * 1 2 3 30 30 H 1.09002 * 109.46781 * 329.99761 * 1 2 3 31 31 H 1.09002 * 109.47358 * 59.99741 * 5 3 2 32 32 H 1.09001 * 109.47345 * 300.00322 * 5 3 2 33 33 H 1.09000 * 109.47176 * 59.99824 * 7 6 5 34 34 H 1.09003 * 109.46930 * 299.99814 * 7 6 5 35 35 H 1.07992 * 120.35413 * 0.02562 * 9 8 7 36 36 H 1.08001 * 119.58252 * 179.97438 * 10 9 8 37 37 H 0.96701 * 113.99703 * 269.72988 * 13 12 11 38 38 H 1.07994 * 120.44689 * 359.95868 * 14 8 7 39 39 H 1.08999 * 112.85399 * 168.79931 * 15 2 1 40 40 H 1.09003 * 113.61298 * 334.56832 * 16 15 2 41 41 H 1.09001 * 113.61339 * 105.47013 * 16 15 2 42 42 H 1.08993 * 113.61748 * 139.97951 * 17 16 15 43 43 H 0.97001 * 120.00098 * 72.50146 * 18 17 16 44 44 H 0.96998 * 120.00009 * 180.02562 * 22 21 19 45 45 H 1.08998 * 113.61187 * 254.52805 * 27 15 2 46 46 H 1.08999 * 113.61583 * 25.42658 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4723 0.0006 6 8 2.3141 3.5584 0.0011 7 6 1.6995 4.8486 0.0022 8 6 2.7662 5.9131 0.0020 9 6 3.2692 6.4143 1.1951 10 6 4.2456 7.3895 1.1596 11 7 4.7066 7.8436 0.0094 12 6 4.2486 7.3951 -1.1474 13 8 4.7471 7.8942 -2.3064 14 6 3.2663 6.4136 -1.1871 15 6 2.1976 -1.2687 0.0006 16 6 1.5374 -2.3616 -0.8567 17 6 1.9129 -3.3524 0.2577 18 7 3.2397 -3.9502 0.0888 19 6 3.3569 -5.2617 -0.2873 20 1 2.4713 -5.8552 -0.4599 21 6 4.6140 -5.8283 -0.4469 22 7 5.6934 -5.1049 -0.2371 23 14 4.7739 -7.6172 -0.9606 24 1 3.4213 -8.2055 -1.1327 25 1 5.5168 -7.6992 -2.2438 26 1 5.5107 -8.3690 0.0868 27 6 1.8954 -2.1540 1.2211 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7591 2.5299 0.8908 32 1 0.7584 2.5303 -0.8891 33 1 1.0796 4.9549 0.8925 34 1 1.0791 4.9562 -0.8875 35 1 2.9006 6.0452 2.1406 36 1 4.6400 7.7831 2.0848 37 1 4.2673 8.6639 -2.6416 38 1 2.8979 6.0461 -2.1335 39 1 3.2625 -1.1427 -0.1946 40 1 0.4624 -2.2299 -0.9799 41 1 2.0528 -2.5482 -1.7989 42 1 1.1382 -4.0906 0.4649 43 1 4.0351 -3.4171 0.2435 44 1 6.5719 -5.5007 -0.3489 45 1 2.6998 -2.1730 1.9565 46 1 0.9183 -1.9656 1.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571658824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:47 Heat of formation + Delta-G solvation = -65.135771 kcal Electronic energy + Delta-G solvation = -27651.859620 eV Core-core repulsion = 23542.581387 eV Total energy + Delta-G solvation = -4109.278233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53174 -41.33682 -39.70926 -38.64458 -37.90142 -36.23187 -34.83316 -34.24891 -31.87365 -31.27604 -29.62972 -27.96503 -27.43984 -26.52972 -26.02310 -24.50831 -24.19229 -23.10320 -20.90136 -19.67948 -19.57059 -19.29648 -18.41797 -18.10031 -17.64464 -17.29994 -17.18757 -16.96639 -16.66489 -16.60501 -15.89944 -15.74453 -15.52438 -15.20784 -14.99212 -14.40038 -14.17326 -14.09735 -14.06841 -13.48990 -13.38876 -13.28682 -13.22031 -13.10832 -12.83916 -12.81362 -12.73469 -12.66298 -12.48051 -12.11934 -11.82108 -11.66986 -11.23507 -10.96713 -10.92041 -10.75596 -10.64783 -10.51746 -9.95270 -9.57577 -9.05591 -7.96589 -5.27242 -0.02865 0.03465 1.46473 1.48074 1.56095 1.58275 1.76926 2.49923 2.54424 2.66128 3.05049 3.35445 3.47577 3.64816 3.68941 3.78807 3.85584 3.86185 4.04433 4.05168 4.11961 4.21349 4.26957 4.31367 4.33143 4.39232 4.43205 4.57288 4.72861 4.74646 4.77741 4.80853 4.84104 4.96112 5.07467 5.10116 5.22703 5.24758 5.32392 5.51573 5.54487 5.69104 6.00986 6.25257 6.46863 6.58738 6.89581 7.18876 7.29256 8.05556 8.26998 9.27272 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.001865 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.597873 B =15011.731326 C =15930.997951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.598 5.598 3 C 0.494 3.506 4 O -0.590 6.590 5 C 0.056 3.944 6 O -0.398 6.398 7 C 0.098 3.902 8 C -0.042 4.042 9 C -0.160 4.160 10 C 0.112 3.888 11 N -0.533 5.533 12 C 0.290 3.710 13 O -0.496 6.496 14 C -0.173 4.173 15 C 0.127 3.873 16 C -0.158 4.158 17 C 0.151 3.849 18 N -0.726 5.726 19 C -0.240 4.240 20 H 0.087 0.913 21 C -0.083 4.083 22 N -0.975 5.975 23 Si 0.979 3.021 24 H -0.258 1.258 25 H -0.297 1.297 26 H -0.295 1.295 27 C -0.147 4.147 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.419 0.581 38 H 0.153 0.847 39 H 0.063 0.937 40 H 0.119 0.881 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.369 0.631 44 H 0.250 0.750 45 H 0.045 0.955 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.073 26.912 2.150 34.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.330 5.330 3 C 0.283 3.717 4 O -0.470 6.470 5 C -0.023 4.023 6 O -0.318 6.318 7 C 0.023 3.977 8 C -0.050 4.050 9 C -0.180 4.180 10 C -0.044 4.044 11 N -0.253 5.253 12 C 0.111 3.889 13 O -0.306 6.306 14 C -0.194 4.194 15 C 0.023 3.977 16 C -0.200 4.200 17 C 0.041 3.959 18 N -0.363 5.363 19 C -0.372 4.372 20 H 0.104 0.896 21 C -0.275 4.275 22 N -0.625 5.625 23 Si 0.807 3.193 24 H -0.182 1.182 25 H -0.224 1.224 26 H -0.222 1.222 27 C -0.187 4.187 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.185 0.815 36 H 0.205 0.795 37 H 0.280 0.720 38 H 0.170 0.830 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.060 0.940 42 H 0.100 0.900 43 H 0.200 0.800 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.288 26.892 2.066 33.158 hybrid contribution 0.450 -0.976 -0.561 1.212 sum -18.838 25.916 1.506 32.074 Atomic orbital electron populations 1.22242 0.76167 1.05677 1.03899 1.47965 1.08817 1.04182 1.72071 1.21310 0.87792 0.86829 0.75752 1.90745 1.17103 1.88004 1.51100 1.22413 0.91030 0.82949 1.05901 1.88069 1.33795 1.13987 1.95914 1.21592 0.92250 0.79412 1.04480 1.20224 0.96745 0.95166 0.92863 1.22451 0.98128 0.97537 0.99880 1.23048 0.92811 0.93308 0.95264 1.67169 1.28195 1.30459 0.99476 1.19371 0.90597 0.93451 0.85433 1.84765 1.59861 1.51692 1.34297 1.22220 0.97375 0.99177 1.00626 1.22271 0.95734 0.81577 0.98158 1.24110 1.01618 0.95903 0.98352 1.21258 0.87602 0.92664 0.94393 1.42463 1.02765 1.09945 1.81125 1.19785 0.92633 0.88279 1.36463 0.89557 1.25707 0.95322 1.02764 1.03719 1.69871 0.97367 1.37479 1.57806 0.84993 0.78037 0.79572 0.76657 1.18231 1.22443 1.22221 1.23834 1.02846 0.95572 0.96427 0.90635 0.89218 0.87657 0.86020 0.86649 0.88274 0.89224 0.81531 0.79469 0.71982 0.82953 0.91858 0.86290 0.94043 0.89957 0.79977 0.94130 0.93649 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 8.85 127.77 1.13 1.80 16 2 N -0.60 -14.63 3.08 -819.65 -2.53 -17.16 16 3 C 0.49 14.19 7.75 87.65 0.68 14.87 16 4 O -0.59 -25.39 15.98 15.99 0.26 -25.13 16 5 C 0.06 0.87 4.97 71.23 0.35 1.23 16 6 O -0.40 -8.66 9.86 -129.94 -1.28 -9.94 16 7 C 0.10 1.13 6.11 71.24 0.44 1.57 16 8 C -0.04 -0.67 5.54 -19.69 -0.11 -0.78 16 9 C -0.16 -2.31 9.81 22.37 0.22 -2.09 16 10 C 0.11 1.85 11.18 84.63 0.95 2.79 16 11 N -0.53 -11.91 10.39 -308.94 -3.21 -15.12 16 12 C 0.29 6.12 7.75 84.79 0.66 6.77 16 13 O -0.50 -9.27 13.56 -89.92 -1.22 -10.49 16 14 C -0.17 -3.12 9.75 22.47 0.22 -2.90 16 15 C 0.13 4.26 4.08 45.52 0.19 4.45 16 16 C -0.16 -5.07 7.30 31.12 0.23 -4.84 16 17 C 0.15 5.72 4.56 45.52 0.21 5.92 16 18 N -0.73 -37.49 5.31 -320.46 -1.70 -39.19 16 19 C -0.24 -13.40 9.97 84.03 0.84 -12.56 16 20 H 0.09 4.49 7.83 -2.91 -0.02 4.46 16 21 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 22 N -0.97 -62.33 13.06 21.65 0.28 -62.05 16 23 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 27 C -0.15 -4.64 7.36 31.12 0.23 -4.41 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.86 6.34 -2.39 -0.02 0.85 16 30 H 0.11 0.39 6.44 -2.39 -0.02 0.38 16 31 H 0.12 0.88 7.40 -2.39 -0.02 0.86 16 32 H 0.12 0.99 8.11 -2.39 -0.02 0.97 16 33 H 0.10 0.50 8.10 -2.39 -0.02 0.48 16 34 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 35 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.42 2.97 9.06 -74.06 -0.67 2.30 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.06 2.86 7.23 -2.39 -0.02 2.84 16 40 H 0.12 2.68 6.72 -2.39 -0.02 2.66 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 43 H 0.37 21.33 7.90 -92.71 -0.73 20.60 16 44 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.12 2.75 6.92 -2.39 -0.02 2.73 16 Total: -1.00 -92.84 387.75 -1.07 -93.90 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.38 Total: 28.94 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.68 Total: 7.37 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -7.15 Total: -133.52 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -2.24 Total: -45.56 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -92.84 -1.07 -93.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571658824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.768 kcal (2) G-P(sol) polarization free energy of solvation -92.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds