Wall clock time and date at job start Tue Mar 31 2020 18:43:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46493 * 119.99931 * 2 1
4 4 C 1.52994 * 109.47582 * 270.00415 * 3 2 1
5 5 O 1.42905 * 109.47144 * 65.00186 * 4 3 2
6 6 C 1.42894 * 113.99816 * 180.02562 * 5 4 3
7 7 C 1.53007 * 109.46799 * 179.97438 * 6 5 4
8 8 N 1.46497 * 109.47006 * 65.00302 * 7 6 5
9 9 C 1.36942 * 119.99628 * 180.02562 * 8 7 6
10 10 H 1.07995 * 120.00154 * 359.97438 * 9 8 7
11 11 C 1.38813 * 119.99847 * 180.02562 * 9 8 7
12 12 N 1.31613 * 120.00151 * 179.97438 * 11 9 8
13 13 Si 1.86806 * 119.99852 * 359.97438 * 11 9 8
14 14 H 1.48503 * 109.47011 * 90.00347 * 13 11 9
15 15 H 1.48506 * 109.47098 * 210.00305 * 13 11 9
16 16 H 1.48502 * 109.47171 * 330.00535 * 13 11 9
17 17 C 1.34773 * 119.99776 * 180.02562 * 2 1 3
18 18 O 1.21558 * 119.99978 * 184.86371 * 17 2 1
19 19 C 1.47858 * 120.00549 * 4.86958 * 17 2 1
20 20 C 1.39703 * 120.07139 * 320.69814 * 19 17 2
21 21 C 1.38057 * 120.14920 * 179.97438 * 20 19 17
22 22 C 1.38100 * 120.29449 * 359.76778 * 21 20 19
23 23 C 1.39670 * 120.14300 * 0.50851 * 22 21 20
24 24 C 1.47858 * 120.07513 * 179.73800 * 23 22 21
25 25 N 1.34781 * 120.00060 * 359.72937 * 24 23 22
26 26 O 1.21545 * 120.00077 * 179.72803 * 24 23 22
27 27 C 1.39292 * 120.07739 * 140.71830 * 19 17 2
28 28 H 1.09005 * 109.46652 * 265.55440 * 1 2 3
29 29 H 1.08996 * 109.47106 * 25.55325 * 1 2 3
30 30 H 1.09001 * 109.46962 * 145.55656 * 1 2 3
31 31 H 1.09009 * 109.47199 * 30.01039 * 3 2 1
32 32 H 1.09002 * 109.47194 * 150.00108 * 3 2 1
33 33 H 1.09005 * 109.47231 * 185.00269 * 4 3 2
34 34 H 1.08994 * 109.47170 * 305.00063 * 4 3 2
35 35 H 1.08999 * 109.47800 * 299.99907 * 6 5 4
36 36 H 1.09000 * 109.47660 * 60.00384 * 6 5 4
37 37 H 1.09002 * 109.47025 * 185.00108 * 7 6 5
38 38 H 1.08996 * 109.46907 * 304.99886 * 7 6 5
39 39 H 0.97003 * 120.00207 * 359.97438 * 8 7 6
40 40 H 0.97003 * 120.00051 * 179.97438 * 12 11 9
41 41 H 1.08001 * 119.92831 * 0.02654 * 20 19 17
42 42 H 1.07993 * 119.85604 * 180.02562 * 21 20 19
43 43 H 1.07997 * 119.92875 * 180.27498 * 22 21 20
44 44 H 0.97001 * 119.99255 * 0.02562 * 25 24 23
45 45 H 0.96995 * 120.00520 * 179.72090 * 25 24 23
46 46 H 1.07993 * 120.14963 * 0.02562 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7105 -1.4424
5 8 1.2059 1.9937 -2.0812
6 6 1.3323 2.4167 -3.4403
7 6 -0.0569 2.6899 -4.0206
8 7 -0.6658 3.8217 -3.3174
9 6 -1.9184 4.2510 -3.6668
10 1 -2.4571 3.7555 -4.4609
11 6 -2.4953 5.3237 -3.0010
12 7 -3.6989 5.7366 -3.3370
13 14 -1.5631 6.1812 -1.6279
14 1 -0.7539 7.2893 -2.1958
15 1 -2.5284 6.7287 -0.6410
16 1 -0.6661 5.2075 -0.9552
17 6 2.1389 -1.1672 -0.0005
18 8 3.3512 -1.1692 0.0887
19 6 1.4037 -2.4454 -0.1098
20 6 0.1905 -2.6148 0.5620
21 6 -0.4976 -3.8073 0.4607
22 6 0.0051 -4.8385 -0.3082
23 6 1.2197 -4.6845 -0.9804
24 6 1.7594 -5.7916 -1.7985
25 7 1.0818 -6.9529 -1.8919
26 8 2.8140 -5.6543 -2.3869
27 6 1.9192 -3.4834 -0.8824
28 1 -0.3633 -0.0797 1.0247
29 1 -0.3633 0.9271 -0.4433
30 1 -0.3633 -0.8475 -0.5813
31 1 1.6085 2.0283 0.5140
32 1 3.1500 1.1384 0.5138
33 1 3.0732 2.6065 -1.4436
34 1 2.9641 0.9133 -1.9815
35 1 1.9299 3.3272 -3.4835
36 1 1.8205 1.6338 -4.0207
37 1 0.0324 2.9264 -5.0809
38 1 -0.6825 1.8060 -3.8969
39 1 -0.1821 4.2665 -2.6039
40 1 -4.1021 6.4860 -2.8715
41 1 -0.2104 -1.8107 1.1613
42 1 -1.4351 -3.9330 0.9816
43 1 -0.5403 -5.7673 -0.3869
44 1 0.2399 -7.0622 -1.4227
45 1 1.4337 -7.6778 -2.4319
46 1 2.8570 -3.3580 -1.4031
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001571674847.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:43:49
Heat of formation + Delta-G solvation = -62.549502 kcal
Electronic energy + Delta-G solvation = -28482.045595 eV
Core-core repulsion = 24372.879511 eV
Total energy + Delta-G solvation = -4109.166084 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.92416 -39.90006 -38.30275 -37.75002 -35.81019 -34.59480 -34.29963 -32.14386
-31.53067 -31.46179 -29.87069 -28.06942 -26.83845 -24.56013 -24.42220 -23.28599
-22.45340 -21.33771 -21.12947 -19.80726 -18.50106 -17.63293 -17.37672 -17.13543
-16.59531 -16.53198 -16.23599 -15.87021 -15.48906 -15.12915 -14.78606 -14.77318
-14.30894 -14.22533 -14.14533 -13.76018 -13.46954 -13.17376 -12.95829 -12.86551
-12.66599 -12.60620 -12.09128 -12.00830 -11.90266 -11.68111 -11.55031 -11.13383
-10.85769 -10.54194 -10.52061 -10.17203 -10.10919 -10.10425 -9.58446 -9.47022
-9.41779 -9.37937 -8.90220 -8.81449 -7.20203 -5.75063 -3.09598 0.25893
0.69260 2.21854 2.58508 2.82715 3.05829 3.39099 3.43554 3.44149
3.46368 3.86294 4.10411 4.25633 4.35789 4.54438 4.61543 4.68021
4.93417 4.99278 5.01882 5.14639 5.17028 5.27109 5.34992 5.36641
5.45495 5.49632 5.55688 5.57808 5.71072 5.74311 5.77949 5.79442
5.84548 5.88941 6.01157 6.22153 6.31820 6.36640 6.51522 6.65132
6.84267 7.14437 7.43795 7.79984 7.91208 8.01393 8.43983 9.24162
9.96532 10.17661 11.43446
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.014504 B = 0.002504 C = 0.002434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1929.975509 B =11180.674976 C =11501.349615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.598 5.598
3 C 0.118 3.882
4 C 0.043 3.957
5 O -0.374 6.374
6 C 0.054 3.946
7 C 0.160 3.840
8 N -0.751 5.751
9 C -0.242 4.242
10 H 0.089 0.911
11 C 0.003 3.997
12 N -0.936 5.936
13 Si 0.884 3.116
14 H -0.286 1.286
15 H -0.292 1.292
16 H -0.274 1.274
17 C 0.558 3.442
18 O -0.536 6.536
19 C -0.132 4.132
20 C -0.065 4.065
21 C -0.132 4.132
22 C -0.066 4.066
23 C -0.148 4.148
24 C 0.565 3.435
25 N -0.851 5.851
26 O -0.535 6.535
27 C -0.005 4.005
28 H 0.057 0.943
29 H 0.095 0.905
30 H 0.075 0.925
31 H 0.091 0.909
32 H 0.099 0.901
33 H 0.057 0.943
34 H 0.049 0.951
35 H 0.047 0.953
36 H 0.047 0.953
37 H 0.041 0.959
38 H 0.033 0.967
39 H 0.364 0.636
40 H 0.259 0.741
41 H 0.144 0.856
42 H 0.138 0.862
43 H 0.130 0.870
44 H 0.401 0.599
45 H 0.406 0.594
46 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.269 -24.004 9.852 27.233
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.329 5.329
3 C -0.004 4.004
4 C -0.035 4.035
5 O -0.294 6.294
6 C -0.022 4.022
7 C 0.033 3.967
8 N -0.397 5.397
9 C -0.372 4.372
10 H 0.107 0.893
11 C -0.193 4.193
12 N -0.584 5.584
13 Si 0.714 3.286
14 H -0.212 1.212
15 H -0.218 1.218
16 H -0.200 1.200
17 C 0.346 3.654
18 O -0.414 6.414
19 C -0.135 4.135
20 C -0.083 4.083
21 C -0.150 4.150
22 C -0.085 4.085
23 C -0.151 4.151
24 C 0.351 3.649
25 N -0.415 5.415
26 O -0.411 6.411
27 C -0.025 4.025
28 H 0.075 0.925
29 H 0.114 0.886
30 H 0.093 0.907
31 H 0.109 0.891
32 H 0.117 0.883
33 H 0.076 0.924
34 H 0.067 0.933
35 H 0.066 0.934
36 H 0.065 0.935
37 H 0.058 0.942
38 H 0.051 0.949
39 H 0.197 0.803
40 H 0.069 0.931
41 H 0.161 0.839
42 H 0.156 0.844
43 H 0.148 0.852
44 H 0.230 0.770
45 H 0.237 0.763
46 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 9.207 -23.725 9.562 27.186
hybrid contribution 0.309 0.380 0.796 0.934
sum 9.516 -23.345 10.357 27.255
Atomic orbital electron populations
1.22258 0.78523 1.05465 1.01017 1.47642 1.07703 1.05357 1.72226
1.21606 0.98507 0.84507 0.95785 1.22894 0.87523 0.99288 0.93829
1.87975 1.28002 1.87588 1.25790 1.22845 0.99311 0.97696 0.82374
1.20664 0.90009 0.91391 0.94682 1.42636 1.18383 1.36444 1.42264
1.19072 0.91155 1.11339 1.15593 0.89309 1.24660 0.96401 0.98711
0.99485 1.69705 1.15040 1.29389 1.44294 0.86537 0.79301 0.79808
0.82924 1.21244 1.21837 1.19989 1.18294 0.86973 0.83545 0.76571
1.90793 1.13485 1.87255 1.49844 1.19853 0.96596 0.95019 1.02028
1.21962 0.92303 0.97926 0.96139 1.21091 1.00909 0.92932 1.00072
1.21456 0.93798 0.99020 0.94206 1.19783 0.97288 0.95349 1.02709
1.18205 0.83864 0.82531 0.80290 1.43728 1.27085 1.16501 1.54235
1.90852 1.22450 1.81708 1.46137 1.21279 0.98362 0.89656 0.93203
0.92480 0.88638 0.90694 0.89090 0.88291 0.92446 0.93263 0.93433
0.93466 0.94173 0.94861 0.80343 0.93127 0.83867 0.84403 0.85176
0.76970 0.76258 0.83762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.72 8.66 59.85 0.52 1.24 16
2 N -0.60 -7.14 2.84 -182.69 -0.52 -7.65 16
3 C 0.12 1.40 5.83 -4.05 -0.02 1.37 16
4 C 0.04 0.56 6.28 37.15 0.23 0.79 16
5 O -0.37 -6.00 9.19 -35.23 -0.32 -6.32 16
6 C 0.05 0.87 6.07 37.16 0.23 1.09 16
7 C 0.16 3.12 6.65 -4.04 -0.03 3.10 16
8 N -0.75 -18.08 5.35 -59.91 -0.32 -18.41 16
9 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16
10 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16
11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16
12 N -0.94 -29.44 13.97 55.49 0.78 -28.67 16
13 Si 0.88 22.14 27.74 -169.99 -4.71 17.43 16
14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
16 H -0.27 -6.47 6.52 56.52 0.37 -6.10 16
17 C 0.56 7.35 7.35 -12.33 -0.09 7.26 16
18 O -0.54 -8.69 16.46 5.31 0.09 -8.60 16
19 C -0.13 -1.45 5.23 -105.02 -0.55 -2.00 16
20 C -0.06 -0.52 7.56 -39.10 -0.30 -0.81 16
21 C -0.13 -0.80 10.02 -39.70 -0.40 -1.19 16
22 C -0.07 -0.40 9.54 -39.10 -0.37 -0.77 16
23 C -0.15 -1.36 5.87 -105.02 -0.62 -1.98 16
24 C 0.57 5.53 8.05 -12.32 -0.10 5.43 16
25 N -0.85 -4.25 8.82 30.53 0.27 -3.98 16
26 O -0.53 -7.62 17.18 5.33 0.09 -7.53 16
27 C -0.01 -0.06 9.17 -38.78 -0.36 -0.42 16
28 H 0.06 0.44 6.89 -51.93 -0.36 0.09 16
29 H 0.09 1.21 7.21 -51.93 -0.37 0.83 16
30 H 0.07 0.72 5.81 -51.93 -0.30 0.42 16
31 H 0.09 1.01 8.07 -51.92 -0.42 0.59 16
32 H 0.10 1.12 7.36 -51.93 -0.38 0.74 16
33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16
35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.36 8.64 5.53 -40.82 -0.23 8.41 16
40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16
41 H 0.14 0.92 5.30 -52.49 -0.28 0.64 16
42 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16
43 H 0.13 0.30 6.39 -52.49 -0.34 -0.03 16
44 H 0.40 0.74 6.85 -40.82 -0.28 0.46 16
45 H 0.41 1.58 8.93 -40.82 -0.36 1.22 16
46 H 0.14 1.90 7.64 -52.49 -0.40 1.50 16
LS Contribution 383.78 15.07 5.78 5.78
Total: -1.00 -38.25 383.78 -7.24 -45.49
By element:
Atomic # 1 Polarization: 12.68 SS G_CDS: -6.27 Total: 6.41 kcal
Atomic # 6 Polarization: 8.16 SS G_CDS: -2.10 Total: 6.05 kcal
Atomic # 7 Polarization: -58.92 SS G_CDS: 0.21 Total: -58.71 kcal
Atomic # 8 Polarization: -22.30 SS G_CDS: -0.14 Total: -22.45 kcal
Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -38.25 -7.24 -45.49 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571674847.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.058 kcal
(2) G-P(sol) polarization free energy of solvation -38.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.305 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds