Wall clock time and date at job start Tue Mar 31 2020 18:43:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.46493 * 119.99931 * 2 1
4 4 C 1.52994 * 109.47582 * 270.00415 * 3 2 1
5 5 O 1.42905 * 109.47144 * 65.00186 * 4 3 2
6 6 C 1.42894 * 113.99816 * 180.02562 * 5 4 3
7 7 C 1.53007 * 109.46799 * 179.97438 * 6 5 4
8 8 N 1.46497 * 109.47006 * 65.00302 * 7 6 5
9 9 C 1.36942 * 119.99628 * 180.02562 * 8 7 6
10 10 H 1.07995 * 120.00154 * 359.97438 * 9 8 7
11 11 C 1.38813 * 119.99847 * 180.02562 * 9 8 7
12 12 N 1.31613 * 120.00151 * 179.97438 * 11 9 8
13 13 Si 1.86806 * 119.99852 * 359.97438 * 11 9 8
14 14 H 1.48503 * 109.47011 * 90.00347 * 13 11 9
15 15 H 1.48506 * 109.47098 * 210.00305 * 13 11 9
16 16 H 1.48502 * 109.47171 * 330.00535 * 13 11 9
17 17 C 1.34773 * 119.99776 * 180.02562 * 2 1 3
18 18 O 1.21558 * 119.99978 * 184.86371 * 17 2 1
19 19 C 1.47858 * 120.00549 * 4.86958 * 17 2 1
20 20 C 1.39703 * 120.07139 * 320.69814 * 19 17 2
21 21 C 1.38057 * 120.14920 * 179.97438 * 20 19 17
22 22 C 1.38100 * 120.29449 * 359.76778 * 21 20 19
23 23 C 1.39670 * 120.14300 * 0.50851 * 22 21 20
24 24 C 1.47858 * 120.07513 * 179.73800 * 23 22 21
25 25 N 1.34781 * 120.00060 * 359.72937 * 24 23 22
26 26 O 1.21545 * 120.00077 * 179.72803 * 24 23 22
27 27 C 1.39292 * 120.07739 * 140.71830 * 19 17 2
28 28 H 1.09005 * 109.46652 * 265.55440 * 1 2 3
29 29 H 1.08996 * 109.47106 * 25.55325 * 1 2 3
30 30 H 1.09001 * 109.46962 * 145.55656 * 1 2 3
31 31 H 1.09009 * 109.47199 * 30.01039 * 3 2 1
32 32 H 1.09002 * 109.47194 * 150.00108 * 3 2 1
33 33 H 1.09005 * 109.47231 * 185.00269 * 4 3 2
34 34 H 1.08994 * 109.47170 * 305.00063 * 4 3 2
35 35 H 1.08999 * 109.47800 * 299.99907 * 6 5 4
36 36 H 1.09000 * 109.47660 * 60.00384 * 6 5 4
37 37 H 1.09002 * 109.47025 * 185.00108 * 7 6 5
38 38 H 1.08996 * 109.46907 * 304.99886 * 7 6 5
39 39 H 0.97003 * 120.00207 * 359.97438 * 8 7 6
40 40 H 0.97003 * 120.00051 * 179.97438 * 12 11 9
41 41 H 1.08001 * 119.92831 * 0.02654 * 20 19 17
42 42 H 1.07993 * 119.85604 * 180.02562 * 21 20 19
43 43 H 1.07997 * 119.92875 * 180.27498 * 22 21 20
44 44 H 0.97001 * 119.99255 * 0.02562 * 25 24 23
45 45 H 0.96995 * 120.00520 * 179.72090 * 25 24 23
46 46 H 1.07993 * 120.14963 * 0.02562 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7105 -1.4424
5 8 1.2059 1.9937 -2.0812
6 6 1.3323 2.4167 -3.4403
7 6 -0.0569 2.6899 -4.0206
8 7 -0.6658 3.8217 -3.3174
9 6 -1.9184 4.2510 -3.6668
10 1 -2.4571 3.7555 -4.4609
11 6 -2.4953 5.3237 -3.0010
12 7 -3.6989 5.7366 -3.3370
13 14 -1.5631 6.1812 -1.6279
14 1 -0.7539 7.2893 -2.1958
15 1 -2.5284 6.7287 -0.6410
16 1 -0.6661 5.2075 -0.9552
17 6 2.1389 -1.1672 -0.0005
18 8 3.3512 -1.1692 0.0887
19 6 1.4037 -2.4454 -0.1098
20 6 0.1905 -2.6148 0.5620
21 6 -0.4976 -3.8073 0.4607
22 6 0.0051 -4.8385 -0.3082
23 6 1.2197 -4.6845 -0.9804
24 6 1.7594 -5.7916 -1.7985
25 7 1.0818 -6.9529 -1.8919
26 8 2.8140 -5.6543 -2.3869
27 6 1.9192 -3.4834 -0.8824
28 1 -0.3633 -0.0797 1.0247
29 1 -0.3633 0.9271 -0.4433
30 1 -0.3633 -0.8475 -0.5813
31 1 1.6085 2.0283 0.5140
32 1 3.1500 1.1384 0.5138
33 1 3.0732 2.6065 -1.4436
34 1 2.9641 0.9133 -1.9815
35 1 1.9299 3.3272 -3.4835
36 1 1.8205 1.6338 -4.0207
37 1 0.0324 2.9264 -5.0809
38 1 -0.6825 1.8060 -3.8969
39 1 -0.1821 4.2665 -2.6039
40 1 -4.1021 6.4860 -2.8715
41 1 -0.2104 -1.8107 1.1613
42 1 -1.4351 -3.9330 0.9816
43 1 -0.5403 -5.7673 -0.3869
44 1 0.2399 -7.0622 -1.4227
45 1 1.4337 -7.6778 -2.4319
46 1 2.8570 -3.3580 -1.4031
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001571674847.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:43:48
Heat of formation + Delta-G solvation = -93.246732 kcal
Electronic energy + Delta-G solvation = -28483.376727 eV
Core-core repulsion = 24372.879511 eV
Total energy + Delta-G solvation = -4110.497216 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.72421 -40.73877 -39.26275 -38.76745 -36.97981 -36.27811 -34.99451 -33.68727
-32.72540 -32.17552 -30.99169 -29.56711 -27.74019 -25.38806 -25.22947 -25.10027
-23.28317 -22.83105 -22.01954 -20.62517 -19.74030 -19.21007 -18.14584 -18.01900
-17.49411 -17.39507 -17.13165 -16.95141 -16.73087 -16.18465 -15.93680 -15.83415
-15.49430 -15.34329 -14.98617 -14.81141 -14.65784 -14.58991 -14.28600 -13.98245
-13.76006 -13.62538 -13.43976 -13.12903 -12.83531 -12.80657 -12.67430 -12.48754
-12.41795 -12.12965 -11.90842 -11.72788 -11.34717 -11.07632 -10.99942 -10.80232
-10.57235 -10.13699 -10.05525 -9.75478 -9.28010 -8.00382 -5.33433 -0.37501
-0.01522 1.40902 1.43426 1.44231 1.52207 1.74699 1.97959 2.45619
2.51307 2.69177 2.77044 3.31464 3.33781 3.66329 3.72428 3.80554
3.97862 4.00119 4.02808 4.12141 4.22501 4.28566 4.34929 4.38139
4.41697 4.49468 4.53081 4.59073 4.64756 4.79617 4.84115 4.95043
5.02091 5.09234 5.11533 5.18561 5.23667 5.40159 5.69507 5.76644
5.82326 6.16895 6.23125 6.30219 6.36116 6.95270 7.10134 7.22698
7.85815 8.06888 9.21114
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.014504 B = 0.002504 C = 0.002434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1929.975509 B =11180.674976 C =11501.349615
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.596 5.596
3 C 0.116 3.884
4 C 0.044 3.956
5 O -0.391 6.391
6 C 0.063 3.937
7 C 0.156 3.844
8 N -0.752 5.752
9 C -0.234 4.234
10 H 0.056 0.944
11 C -0.064 4.064
12 N -0.984 5.984
13 Si 0.956 3.044
14 H -0.281 1.281
15 H -0.295 1.295
16 H -0.249 1.249
17 C 0.553 3.447
18 O -0.580 6.580
19 C -0.152 4.152
20 C -0.062 4.062
21 C -0.121 4.121
22 C -0.048 4.048
23 C -0.160 4.160
24 C 0.560 3.440
25 N -0.824 5.824
26 O -0.593 6.593
27 C -0.032 4.032
28 H 0.088 0.912
29 H 0.073 0.927
30 H 0.081 0.919
31 H 0.102 0.898
32 H 0.101 0.899
33 H 0.074 0.926
34 H 0.039 0.961
35 H 0.058 0.942
36 H 0.069 0.931
37 H 0.046 0.954
38 H 0.026 0.974
39 H 0.368 0.632
40 H 0.258 0.742
41 H 0.161 0.839
42 H 0.180 0.820
43 H 0.176 0.824
44 H 0.420 0.580
45 H 0.414 0.586
46 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.381 -25.391 11.988 29.032
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.327 5.327
3 C -0.006 4.006
4 C -0.034 4.034
5 O -0.311 6.311
6 C -0.014 4.014
7 C 0.029 3.971
8 N -0.399 5.399
9 C -0.365 4.365
10 H 0.074 0.926
11 C -0.255 4.255
12 N -0.635 5.635
13 Si 0.784 3.216
14 H -0.207 1.207
15 H -0.222 1.222
16 H -0.173 1.173
17 C 0.343 3.657
18 O -0.461 6.461
19 C -0.155 4.155
20 C -0.080 4.080
21 C -0.138 4.138
22 C -0.066 4.066
23 C -0.163 4.163
24 C 0.346 3.654
25 N -0.389 5.389
26 O -0.475 6.475
27 C -0.052 4.052
28 H 0.106 0.894
29 H 0.092 0.908
30 H 0.099 0.901
31 H 0.121 0.879
32 H 0.119 0.881
33 H 0.092 0.908
34 H 0.057 0.943
35 H 0.076 0.924
36 H 0.088 0.912
37 H 0.064 0.936
38 H 0.044 0.956
39 H 0.201 0.799
40 H 0.067 0.933
41 H 0.179 0.821
42 H 0.197 0.803
43 H 0.193 0.807
44 H 0.253 0.747
45 H 0.247 0.753
46 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 8.291 -25.175 11.701 28.973
hybrid contribution 0.497 0.677 0.063 0.842
sum 8.788 -24.498 11.763 28.562
Atomic orbital electron populations
1.22357 0.77376 1.04514 1.02890 1.47744 1.08436 1.05087 1.71433
1.21657 0.99015 0.84803 0.95130 1.22989 0.86592 0.99724 0.94061
1.87943 1.29651 1.87730 1.25740 1.22695 0.96856 0.99007 0.82815
1.20812 0.91834 0.89508 0.94896 1.42619 1.16996 1.37559 1.42679
1.19047 0.92493 1.10713 1.14238 0.92616 1.25501 0.97455 0.99896
1.02681 1.69887 1.17162 1.30317 1.46151 0.85380 0.78058 0.78815
0.79388 1.20737 1.22154 1.17350 1.18714 0.86641 0.84586 0.75746
1.90754 1.15364 1.87928 1.52018 1.19741 0.98145 0.93850 1.03797
1.22215 0.90951 0.99505 0.95345 1.21591 1.01680 0.91535 0.99038
1.21942 0.91989 1.00777 0.91886 1.19828 0.98603 0.94278 1.03598
1.18434 0.83380 0.83697 0.79845 1.43511 1.27087 1.15017 1.53239
1.90824 1.25103 1.82865 1.48699 1.21120 0.98007 0.91515 0.94583
0.89357 0.90830 0.90076 0.87933 0.88075 0.90754 0.94255 0.92409
0.91250 0.93615 0.95552 0.79882 0.93337 0.82135 0.80303 0.80671
0.74717 0.75344 0.87348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.32 8.66 127.77 1.11 2.43 16
2 N -0.60 -13.86 2.84 -850.17 -2.41 -16.27 16
3 C 0.12 2.64 5.83 86.38 0.50 3.15 16
4 C 0.04 1.10 6.28 71.98 0.45 1.55 16
5 O -0.39 -11.93 9.19 -148.98 -1.37 -13.30 16
6 C 0.06 1.89 6.07 71.98 0.44 2.32 16
7 C 0.16 5.94 6.65 86.38 0.57 6.51 16
8 N -0.75 -35.44 5.35 -343.45 -1.84 -37.28 16
9 C -0.23 -13.42 10.47 84.03 0.88 -12.54 16
10 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16
11 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16
12 N -0.98 -62.98 13.97 21.65 0.30 -62.68 16
13 Si 0.96 45.26 27.74 68.60 1.90 47.17 16
14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16
15 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16
16 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16
17 C 0.55 14.93 7.35 86.79 0.64 15.57 16
18 O -0.58 -19.89 16.46 -3.90 -0.06 -19.95 16
19 C -0.15 -3.35 5.23 -20.12 -0.11 -3.45 16
20 C -0.06 -0.82 7.56 22.58 0.17 -0.65 16
21 C -0.12 -0.91 10.02 22.19 0.22 -0.69 16
22 C -0.05 -0.39 9.54 22.58 0.22 -0.17 16
23 C -0.16 -2.82 5.87 -20.12 -0.12 -2.94 16
24 C 0.56 10.85 8.05 86.79 0.70 11.55 16
25 N -0.82 -6.48 8.82 -175.59 -1.55 -8.03 16
26 O -0.59 -18.02 17.18 -3.86 -0.07 -18.09 16
27 C -0.03 -0.78 9.17 22.79 0.21 -0.58 16
28 H 0.09 1.10 6.89 -2.38 -0.02 1.08 16
29 H 0.07 1.75 7.21 -2.39 -0.02 1.74 16
30 H 0.08 1.41 5.81 -2.39 -0.01 1.40 16
31 H 0.10 2.08 8.07 -2.38 -0.02 2.06 16
32 H 0.10 2.26 7.36 -2.39 -0.02 2.24 16
33 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16
34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16
36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
39 H 0.37 16.66 5.53 -92.71 -0.51 16.14 16
40 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16
41 H 0.16 1.50 5.30 -2.91 -0.02 1.48 16
42 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16
43 H 0.18 -0.23 6.39 -2.91 -0.02 -0.25 16
44 H 0.42 -0.08 6.85 -92.71 -0.64 -0.71 16
45 H 0.41 2.48 8.93 -92.71 -0.83 1.65 16
46 H 0.11 3.32 7.64 -2.91 -0.02 3.30 16
Total: -1.00 -88.37 383.78 0.27 -88.11
By element:
Atomic # 1 Polarization: 22.56 SS G_CDS: -0.99 Total: 21.57 kcal
Atomic # 6 Polarization: 12.40 SS G_CDS: 6.35 Total: 18.75 kcal
Atomic # 7 Polarization: -118.76 SS G_CDS: -5.50 Total: -124.26 kcal
Atomic # 8 Polarization: -49.84 SS G_CDS: -1.50 Total: -51.34 kcal
Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.17 kcal
Total: -88.37 0.27 -88.11 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001571674847.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.139 kcal
(2) G-P(sol) polarization free energy of solvation -88.374 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.513 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.247 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds