Wall clock time and date at job start Tue Mar 31 2020 18:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00071 * 2 1 4 4 C 1.39957 * 110.99967 * 123.95289 * 2 1 3 5 5 C 1.38257 * 120.02412 * 300.02473 * 4 2 1 6 6 C 1.39803 * 119.83404 * 179.97438 * 5 4 2 7 7 C 1.47459 * 120.04790 * 179.97438 * 6 5 4 8 8 O 1.21505 * 120.00492 * 0.02562 * 7 6 5 9 9 O 1.34752 * 119.99480 * 179.97438 * 7 6 5 10 10 C 1.39773 * 119.88934 * 359.97438 * 6 5 4 11 11 C 1.37749 * 120.05316 * 359.72395 * 10 6 5 12 12 C 1.38949 * 120.16222 * 0.55138 * 11 10 6 13 13 N 1.39630 * 119.94731 * 179.72060 * 12 11 10 14 14 C 1.34774 * 120.00040 * 335.14669 * 13 12 11 15 15 O 1.21582 * 119.99991 * 354.36465 * 14 13 12 16 16 N 1.34774 * 119.99929 * 174.09706 * 14 13 12 17 17 C 1.46501 * 120.00177 * 180.26857 * 16 14 13 18 18 C 1.52994 * 109.47483 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47493 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47176 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00548 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99583 * 180.02562 * 20 19 18 23 23 N 1.31521 * 119.99526 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00484 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47039 * 89.99873 * 24 22 20 26 26 H 1.48500 * 109.47544 * 210.00258 * 24 22 20 27 27 H 1.48497 * 109.47029 * 330.00492 * 24 22 20 28 28 H 1.08996 * 109.47260 * 299.99591 * 1 2 3 29 29 H 1.09002 * 109.47007 * 60.00043 * 1 2 3 30 30 H 1.09006 * 109.47077 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47189 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47086 * 300.00447 * 3 2 1 33 33 H 1.09005 * 109.47025 * 59.99826 * 3 2 1 34 34 H 1.07994 * 120.08335 * 359.95542 * 5 4 2 35 35 H 0.96702 * 117.00032 * 180.02562 * 9 7 6 36 36 H 1.08011 * 119.97076 * 180.02562 * 10 6 5 37 37 H 1.08001 * 119.92273 * 180.27329 * 11 10 6 38 38 H 0.96996 * 119.99603 * 155.14163 * 13 12 11 39 39 H 0.96999 * 120.00032 * 0.27679 * 16 14 13 40 40 H 1.08995 * 109.47192 * 300.00703 * 17 16 14 41 41 H 1.09008 * 109.46723 * 59.99922 * 17 16 14 42 42 H 1.08996 * 109.47268 * 300.00975 * 18 17 16 43 43 H 1.09008 * 109.46984 * 60.00352 * 18 17 16 44 44 H 1.09003 * 109.46856 * 300.00596 * 19 18 17 45 45 H 1.08994 * 109.46869 * 60.00221 * 19 18 17 46 46 H 0.97001 * 119.99782 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9706 -0.7298 1.0838 5 6 1.6593 -0.3506 2.3765 6 6 2.1620 -1.0828 3.4562 7 6 1.8335 -0.6823 4.8368 8 8 1.1250 0.2844 5.0367 9 8 2.3182 -1.3891 5.8766 10 6 2.9765 -2.1949 3.2247 11 6 3.2786 -2.5722 1.9348 12 6 2.7848 -1.8428 0.8602 13 7 3.0987 -2.2258 -0.4453 14 6 4.2197 -2.9332 -0.6890 15 8 5.0092 -3.1498 0.2098 16 7 4.4628 -3.4050 -1.9278 17 6 5.6785 -4.1789 -2.1914 18 6 5.7109 -4.5920 -3.6642 19 6 6.9801 -5.4008 -3.9393 20 6 7.0122 -5.8071 -5.3901 21 1 6.2080 -5.5171 -6.0501 22 6 8.0684 -6.5491 -5.8749 23 7 8.0966 -6.9033 -7.1413 24 14 9.4597 -7.0502 -4.7337 25 1 9.1443 -8.3630 -4.1154 26 1 10.7215 -7.1586 -5.5092 27 1 9.6194 -6.0273 -3.6691 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.0850 1.3424 0.0005 32 1 1.6459 1.8948 -0.8900 33 1 1.6459 1.8948 0.8900 34 1 1.0296 0.5091 2.5517 35 1 2.0752 -1.0885 6.7631 36 1 3.3652 -2.7617 4.0579 37 1 3.9045 -3.4345 1.7583 38 1 2.5098 -1.9828 -1.1768 39 1 3.8330 -3.2320 -2.6450 40 1 6.5534 -3.5695 -1.9653 41 1 5.6848 -5.0704 -1.5641 42 1 4.8359 -5.2015 -3.8899 43 1 5.7044 -3.7007 -4.2917 44 1 7.8553 -4.7915 -3.7135 45 1 6.9861 -6.2920 -3.3119 46 1 8.8398 -7.4250 -7.4825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598298249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:47 Heat of formation + Delta-G solvation = -85.315852 kcal Electronic energy + Delta-G solvation = -27916.596887 eV Core-core repulsion = 23806.443580 eV Total energy + Delta-G solvation = -4110.153307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28951 -40.39546 -39.38200 -36.89652 -36.43395 -35.80308 -34.88954 -33.41090 -31.62570 -30.52036 -30.05905 -28.01480 -27.21967 -25.32640 -24.62622 -22.99224 -22.20246 -21.28318 -20.96641 -20.28139 -18.68790 -18.24738 -18.00663 -17.51718 -16.72898 -16.12577 -15.93652 -15.83213 -15.61109 -15.40624 -15.21428 -14.62747 -14.36773 -14.17102 -14.04996 -13.98193 -13.73827 -13.07742 -13.02781 -12.73027 -12.65590 -12.59712 -12.14270 -12.11775 -11.98256 -11.92449 -11.73535 -11.13553 -11.04441 -10.95851 -10.78534 -10.29476 -10.07903 -9.87039 -9.73532 -9.26329 -9.23891 -9.08783 -9.04919 -8.58092 -8.32427 -6.08849 -4.07844 0.33621 0.91670 2.13693 2.43290 2.67970 2.98337 3.29439 3.35168 3.37332 3.41063 3.47953 4.04162 4.42044 4.47595 4.64175 4.71295 4.78546 4.89011 4.92199 5.03720 5.09216 5.18408 5.25140 5.43275 5.44894 5.48735 5.53020 5.59964 5.74561 5.78426 5.92898 5.95089 6.07481 6.14116 6.25016 6.35461 6.39136 6.44241 6.57784 6.72316 6.79675 6.90558 7.18737 7.32123 7.54219 7.72068 7.79971 8.36523 8.47331 8.94801 9.53178 11.04272 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.001999 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.271640 B =14001.556177 C =15175.278305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.505 5.505 3 C 0.027 3.973 4 C 0.027 3.973 5 C -0.055 4.055 6 C -0.157 4.157 7 C 0.532 3.468 8 O -0.523 6.523 9 O -0.512 6.512 10 C -0.034 4.034 11 C -0.148 4.148 12 C 0.247 3.753 13 N -0.671 5.671 14 C 0.699 3.301 15 O -0.572 6.572 16 N -0.731 5.731 17 C 0.131 3.869 18 C -0.114 4.114 19 C -0.011 4.011 20 C -0.523 4.523 21 H 0.072 0.928 22 C 0.066 3.934 23 N -0.902 5.902 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.264 1.264 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.136 0.864 35 H 0.413 0.587 36 H 0.142 0.858 37 H 0.163 0.837 38 H 0.417 0.583 39 H 0.399 0.601 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.019 0.981 45 H 0.015 0.985 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.967 14.804 21.120 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.226 5.226 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.076 4.076 6 C -0.160 4.160 7 C 0.377 3.623 8 O -0.414 6.414 9 O -0.323 6.323 10 C -0.053 4.053 11 C -0.169 4.169 12 C 0.146 3.854 13 N -0.316 5.316 14 C 0.399 3.601 15 O -0.450 6.450 16 N -0.385 5.385 17 C 0.008 3.992 18 C -0.152 4.152 19 C -0.049 4.049 20 C -0.561 4.561 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.541 5.541 24 Si 0.707 3.293 25 H -0.202 1.202 26 H -0.214 1.214 27 H -0.189 1.189 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.154 0.846 35 H 0.272 0.728 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.254 0.746 39 H 0.233 0.767 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.998 14.341 20.865 29.949 hybrid contribution -0.273 0.568 1.012 1.192 sum -16.270 14.909 21.877 31.074 Atomic orbital electron populations 1.22534 0.85668 1.02766 1.01426 1.59574 1.08658 1.14650 1.39726 1.22486 1.01155 0.87050 1.01288 1.18229 1.03800 0.95840 0.89157 1.21406 0.96966 0.98297 0.90943 1.18790 1.06853 1.01212 0.89151 1.20839 0.75986 0.79503 0.85927 1.90881 1.36509 1.27638 1.86370 1.84581 1.71249 1.57731 1.18765 1.21386 0.92806 0.93702 0.97400 1.21520 1.02803 1.02161 0.90412 1.17674 0.92881 0.90561 0.84274 1.42614 1.24915 1.55903 1.08147 1.16016 0.81176 0.78823 0.84069 1.90897 1.47451 1.62831 1.43772 1.45392 1.26709 1.57309 1.09041 1.21623 0.84565 0.94543 0.98491 1.21720 1.01278 1.00608 0.91553 1.19498 0.92650 0.94901 0.97812 1.21082 1.07963 1.33873 0.93153 0.91004 1.25039 0.98087 0.95421 0.94983 1.69914 1.32091 1.38386 1.13717 0.86771 0.81811 0.79477 0.81210 1.20234 1.21376 1.18870 0.94761 0.90517 0.90986 0.90957 0.90540 0.94799 0.84606 0.72832 0.84002 0.81947 0.74587 0.76695 0.91605 0.91569 0.92022 0.92007 0.96256 0.96676 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.28 60.06 0.56 0.70 16 2 N -0.51 -3.88 4.30 -186.71 -0.80 -4.69 16 3 C 0.03 0.19 9.33 60.07 0.56 0.75 16 4 C 0.03 0.25 4.73 -83.59 -0.40 -0.15 16 5 C -0.06 -0.53 8.19 -38.99 -0.32 -0.85 16 6 C -0.16 -1.55 5.87 -104.98 -0.62 -2.17 16 7 C 0.53 5.22 8.26 34.49 0.28 5.51 16 8 O -0.52 -6.42 17.12 -19.27 -0.33 -6.75 16 9 O -0.51 -3.55 12.66 -40.63 -0.51 -4.07 16 10 C -0.03 -0.33 9.60 -39.19 -0.38 -0.70 16 11 C -0.15 -1.65 8.69 -39.50 -0.34 -1.99 16 12 C 0.25 2.63 6.45 -83.50 -0.54 2.10 16 13 N -0.67 -6.86 5.26 -14.08 -0.07 -6.94 16 14 C 0.70 9.18 8.36 -86.92 -0.73 8.46 16 15 O -0.57 -9.40 13.49 5.29 0.07 -9.33 16 16 N -0.73 -9.00 5.56 -65.23 -0.36 -9.36 16 17 C 0.13 1.99 5.67 -4.04 -0.02 1.97 16 18 C -0.11 -1.99 5.27 -26.74 -0.14 -2.13 16 19 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 20 C -0.52 -14.38 9.66 -34.44 -0.33 -14.72 16 21 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 22 C 0.07 1.89 5.47 -17.81 -0.10 1.79 16 23 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 24 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 28 H 0.03 0.21 7.26 -51.93 -0.38 -0.17 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.03 0.23 7.47 -51.93 -0.39 -0.16 16 34 H 0.14 1.25 6.65 -52.49 -0.35 0.90 16 35 H 0.41 1.01 9.11 45.56 0.42 1.43 16 36 H 0.14 1.15 7.60 -52.48 -0.40 0.75 16 37 H 0.16 2.07 5.77 -52.49 -0.30 1.76 16 38 H 0.42 3.34 8.27 -40.82 -0.34 3.01 16 39 H 0.40 3.84 8.49 -40.82 -0.35 3.49 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 44 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 45 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -34.51 386.26 -8.53 -43.04 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.82 Total: 3.95 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.62 Total: -1.79 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.47 Total: -47.55 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.77 Total: -20.15 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.51 -8.53 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598298249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.279 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds