Wall clock time and date at job start Tue Mar 31 2020 18:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99597 * 2 1 4 4 C 1.46904 * 110.99949 * 123.95249 * 2 1 3 5 5 C 1.53002 * 109.46736 * 170.00163 * 4 2 1 6 6 C 1.52995 * 109.46517 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.46757 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00488 * 85.97810 * 7 6 5 9 9 C 1.50704 * 109.47454 * 124.99028 * 8 7 6 10 10 H 1.07991 * 119.99914 * 125.22420 * 9 8 7 11 11 C 1.37874 * 119.99881 * 305.23526 * 9 8 7 12 12 N 1.31513 * 120.00436 * 4.12004 * 11 9 8 13 13 Si 1.86805 * 119.99982 * 184.12566 * 11 9 8 14 14 H 1.48497 * 109.47189 * 89.99659 * 13 11 9 15 15 H 1.48497 * 109.46915 * 209.99584 * 13 11 9 16 16 H 1.48501 * 109.46850 * 329.99652 * 13 11 9 17 17 C 1.34775 * 119.99780 * 265.97609 * 7 6 5 18 18 O 1.21557 * 119.99961 * 10.12006 * 17 7 6 19 19 C 1.47851 * 120.00442 * 190.12141 * 17 7 6 20 20 C 1.39682 * 120.48488 * 337.70501 * 19 17 7 21 21 N 1.31740 * 120.89218 * 179.69996 * 20 19 17 22 22 C 1.31747 * 122.04512 * 0.58941 * 21 20 19 23 23 C 1.39682 * 120.87633 * 359.69827 * 22 21 20 24 24 C 1.47733 * 120.49711 * 179.97438 * 23 22 21 25 25 O 1.21475 * 120.00425 * 180.02562 * 24 23 22 26 26 O 1.34709 * 120.00266 * 0.02562 * 24 23 22 27 27 C 1.39717 * 120.49574 * 157.97916 * 19 17 7 28 28 H 1.08999 * 109.47510 * 296.04438 * 1 2 3 29 29 H 1.09000 * 109.47276 * 56.04363 * 1 2 3 30 30 H 1.08999 * 109.47227 * 176.04319 * 1 2 3 31 31 H 1.09009 * 109.46782 * 183.95444 * 3 2 1 32 32 H 1.08999 * 109.47343 * 303.94846 * 3 2 1 33 33 H 1.09001 * 109.47231 * 63.95364 * 3 2 1 34 34 H 1.08994 * 109.46445 * 50.00216 * 4 2 1 35 35 H 1.08993 * 109.47002 * 290.00262 * 4 2 1 36 36 H 1.08995 * 109.47091 * 60.00206 * 5 4 2 37 37 H 1.09001 * 109.47186 * 299.99940 * 5 4 2 38 38 H 1.08995 * 109.47466 * 60.00197 * 6 5 4 39 39 H 1.08996 * 109.47594 * 299.99642 * 6 5 4 40 40 H 1.09000 * 109.46566 * 4.99316 * 8 7 6 41 41 H 1.08994 * 109.47159 * 244.99339 * 8 7 6 42 42 H 0.96998 * 120.00508 * 180.02562 * 12 11 9 43 43 H 1.08000 * 119.55378 * 359.97438 * 20 19 17 44 44 H 1.08006 * 119.56393 * 179.67610 * 22 21 20 45 45 H 0.96699 * 117.00590 * 180.02562 * 26 24 23 46 46 H 1.08000 * 120.91949 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9703 6 6 4.0526 -1.7535 2.1548 7 7 5.4976 -1.9343 1.9950 8 6 6.4220 -0.9019 2.4700 9 6 7.4198 -1.5179 3.4167 10 1 8.4781 -1.4047 3.2345 11 6 6.9812 -2.2262 4.5153 12 7 5.6949 -2.4335 4.6935 13 14 8.2144 -2.8913 5.7509 14 1 8.4505 -1.8771 6.8096 15 1 7.6790 -4.1327 6.3653 16 1 9.4938 -3.1928 5.0600 17 6 5.9765 -3.0505 1.4109 18 8 5.2170 -3.8187 0.8537 19 6 7.4258 -3.3408 1.4479 20 6 8.3496 -2.3123 1.6478 21 7 9.6424 -2.5626 1.6880 22 6 10.1240 -3.7790 1.5322 23 6 9.2721 -4.8658 1.3217 24 6 9.8213 -6.2261 1.1475 25 8 9.0723 -7.1648 0.9645 26 8 11.1528 -6.4257 1.1916 27 6 7.8919 -4.6469 1.2778 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0828 1.3433 -0.0709 32 1 1.5897 1.9163 -0.8525 33 1 1.7042 1.8724 0.9233 34 1 1.5089 -1.7406 1.1756 35 1 1.7975 -0.2248 2.0628 36 1 3.9909 0.0194 0.9323 37 1 3.7024 -1.4965 0.0451 38 1 3.5661 -2.7282 2.1924 39 1 3.8547 -1.2128 3.0803 40 1 5.8620 -0.1235 2.9883 41 1 6.9481 -0.4665 1.6205 42 1 5.3863 -2.9315 5.4666 43 1 7.9991 -1.2987 1.7754 44 1 11.1917 -3.9379 1.5673 45 1 11.4650 -7.3331 1.0719 46 1 7.2051 -5.4647 1.1173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606028631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:02 Heat of formation + Delta-G solvation = -47.259717 kcal Electronic energy + Delta-G solvation = -29844.811707 eV Core-core repulsion = 25736.308638 eV Total energy + Delta-G solvation = -4108.503069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.98745 -40.95765 -39.63542 -38.56242 -37.31632 -37.04493 -34.94625 -33.51353 -33.42998 -31.89264 -29.90666 -28.45346 -27.35212 -25.97463 -25.44270 -24.79332 -23.30712 -22.69166 -21.72690 -20.92029 -19.42961 -18.92003 -18.29342 -17.60086 -17.53592 -16.90907 -16.79560 -16.65621 -16.51520 -16.11823 -16.11184 -15.55248 -15.28449 -14.94726 -14.82164 -14.53263 -14.43500 -14.30241 -14.06470 -13.84893 -13.32852 -13.17482 -12.97318 -12.88938 -12.78846 -12.60553 -12.57798 -12.43749 -12.26725 -12.06109 -11.96133 -11.89123 -11.76940 -11.40671 -11.05517 -10.79415 -10.75817 -10.21875 -9.83038 -9.28435 -9.15546 -8.45153 -6.44949 -0.28698 0.07848 1.27730 1.36767 1.41329 1.55488 1.97462 2.15496 2.22794 2.47797 2.83248 3.08052 3.32174 3.60836 3.80663 3.90557 4.00167 4.08535 4.18075 4.26820 4.30652 4.41942 4.47443 4.52059 4.58253 4.67759 4.70187 4.72276 4.77627 4.81419 4.90915 5.00925 5.03329 5.06836 5.07665 5.20179 5.31566 5.37097 5.43657 5.56513 5.64991 5.69854 6.01693 6.09735 6.15487 6.35912 6.85583 6.96692 7.07160 7.08780 7.50845 8.51120 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.003688 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.475099 B = 7591.108833 C = 8723.617514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.566 5.566 3 C 0.022 3.978 4 C 0.067 3.933 5 C -0.114 4.114 6 C 0.146 3.854 7 N -0.561 5.561 8 C 0.210 3.790 9 C -0.552 4.552 10 H 0.110 0.890 11 C 0.057 3.943 12 N -0.844 5.844 13 Si 0.924 3.076 14 H -0.259 1.259 15 H -0.296 1.296 16 H -0.266 1.266 17 C 0.567 3.433 18 O -0.611 6.611 19 C -0.224 4.224 20 C 0.215 3.785 21 N -0.548 5.548 22 C 0.202 3.798 23 C -0.268 4.268 24 C 0.548 3.452 25 O -0.561 6.561 26 O -0.497 6.497 27 C 0.027 3.973 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.270 0.730 43 H 0.219 0.781 44 H 0.193 0.807 45 H 0.433 0.567 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 5.707 -4.222 7.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.291 5.291 3 C -0.126 4.126 4 C -0.062 4.062 5 C -0.153 4.153 6 C 0.022 3.978 7 N -0.287 5.287 8 C 0.090 3.910 9 C -0.587 4.587 10 H 0.127 0.873 11 C -0.154 4.154 12 N -0.475 5.475 13 Si 0.750 3.250 14 H -0.184 1.184 15 H -0.223 1.223 16 H -0.190 1.190 17 C 0.356 3.644 18 O -0.496 6.496 19 C -0.230 4.230 20 C 0.066 3.934 21 N -0.260 5.260 22 C 0.041 3.959 23 C -0.273 4.273 24 C 0.395 3.605 25 O -0.455 6.455 26 O -0.311 6.311 27 C 0.001 3.999 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.234 0.766 44 H 0.210 0.790 45 H 0.295 0.705 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.728 5.954 -4.630 7.577 hybrid contribution -0.508 -2.007 1.743 2.706 sum 0.220 3.946 -2.887 4.894 Atomic orbital electron populations 1.22412 0.86230 1.02524 1.01131 1.61958 1.08968 1.14853 1.43292 1.22461 1.01115 0.87989 1.01010 1.21927 0.94651 0.98067 0.91549 1.21817 0.95129 1.00265 0.98045 1.21024 0.80197 0.99076 0.97474 1.47870 1.06935 1.18809 1.55110 1.19858 0.89456 0.87850 0.93806 1.22309 0.94914 1.34207 1.07293 0.87321 1.25511 0.96044 0.95185 0.98660 1.70021 1.14592 1.35233 1.27692 0.86015 0.80425 0.78079 0.80518 1.18395 1.22281 1.19002 1.18054 0.87418 0.81105 0.77773 1.90621 1.60423 1.50671 1.47896 1.20558 0.95049 0.95039 1.12324 1.25026 0.87134 1.03322 0.77897 1.68046 1.15053 1.22493 1.20388 1.23629 1.01086 0.86333 0.84835 1.19604 0.93834 0.92944 1.20922 1.20454 0.80588 0.88221 0.71252 1.90849 1.60940 1.44920 1.48760 1.84482 1.22210 1.40058 1.84310 1.21433 0.94277 0.96193 0.87955 0.95206 0.90105 0.91552 0.91466 0.90232 0.95206 0.91521 0.94110 0.90946 0.93431 0.94072 0.90567 0.92371 0.91675 0.92094 0.76572 0.79025 0.70524 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.57 127.69 1.22 1.71 16 2 N -0.57 -14.09 5.02 -948.84 -4.76 -18.85 16 3 C 0.02 0.46 9.32 127.69 1.19 1.65 16 4 C 0.07 1.84 4.96 86.30 0.43 2.27 16 5 C -0.11 -3.64 5.46 30.59 0.17 -3.47 16 6 C 0.15 5.63 4.83 86.38 0.42 6.04 16 7 N -0.56 -23.37 1.68 -839.70 -1.41 -24.78 16 8 C 0.21 7.96 5.33 85.63 0.46 8.42 16 9 C -0.55 -23.17 5.25 25.60 0.13 -23.03 16 10 H 0.11 4.49 5.14 -2.92 -0.01 4.48 16 11 C 0.06 2.60 5.38 84.65 0.46 3.06 16 12 N -0.84 -40.38 11.92 21.45 0.26 -40.12 16 13 Si 0.92 38.47 29.54 68.60 2.03 40.49 16 14 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 15 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 C 0.57 26.58 7.37 86.79 0.64 27.22 16 18 O -0.61 -32.16 16.26 -3.90 -0.06 -32.23 16 19 C -0.22 -9.79 5.20 -20.03 -0.10 -9.89 16 20 C 0.21 8.33 6.55 85.06 0.56 8.89 16 21 N -0.55 -19.94 10.00 -193.65 -1.94 -21.87 16 22 C 0.20 6.71 10.78 85.05 0.92 7.63 16 23 C -0.27 -9.92 5.88 -20.04 -0.12 -10.04 16 24 C 0.55 18.25 8.28 70.33 0.58 18.83 16 25 O -0.56 -22.31 17.20 19.92 0.34 -21.97 16 26 O -0.50 -11.17 12.70 -56.19 -0.71 -11.88 16 27 C 0.03 1.16 9.25 23.01 0.21 1.38 16 28 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 30 H 0.07 1.30 8.12 -2.39 -0.02 1.28 16 31 H 0.07 1.46 6.47 -2.38 -0.02 1.45 16 32 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 33 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 35 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 36 H 0.07 2.12 6.55 -2.39 -0.02 2.11 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.04 1.79 7.46 -2.39 -0.02 1.77 16 39 H 0.08 2.93 7.91 -2.39 -0.02 2.91 16 40 H 0.06 2.17 7.82 -2.39 -0.02 2.15 16 41 H 0.07 2.14 6.33 -2.39 -0.02 2.12 16 42 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 43 H 0.22 7.94 2.46 -13.33 -0.03 7.90 16 44 H 0.19 4.86 7.61 -2.91 -0.02 4.84 16 45 H 0.43 5.27 9.11 -74.06 -0.67 4.60 16 46 H 0.12 5.52 7.55 -2.91 -0.02 5.50 16 Total: -1.00 -62.57 376.76 1.22 -61.35 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.33 Total: 29.20 kcal Atomic # 6 Polarization: 33.50 SS G_CDS: 7.16 Total: 40.66 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -7.86 Total: -105.63 kcal Atomic # 8 Polarization: -65.64 SS G_CDS: -0.43 Total: -66.08 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.49 kcal Total: -62.57 1.22 -61.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606028631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.090 kcal (2) G-P(sol) polarization free energy of solvation -62.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds