Wall clock time and date at job start Tue Mar 31 2020 18:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.49689 * 110.99865 * 2 1 4 4 C 1.49896 * 105.07392 * 115.95146 * 3 2 1 5 5 H 1.09003 * 107.84822 * 280.68465 * 4 3 2 6 6 C 1.49717 * 128.72707 * 148.50981 * 4 3 2 7 7 C 1.55996 * 103.99154 * 209.93664 * 6 4 3 8 8 C 1.56327 * 105.77662 * 6.94044 * 7 6 4 9 9 H 1.09002 * 110.98948 * 267.27212 * 8 7 6 10 10 N 1.46502 * 110.96239 * 143.56034 * 8 7 6 11 11 C 1.34775 * 120.00368 * 92.55938 * 10 8 7 12 12 O 1.21576 * 119.99865 * 0.02562 * 11 10 8 13 13 N 1.34782 * 119.99752 * 180.02562 * 11 10 8 14 14 C 1.46500 * 119.99783 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47092 * 34.99932 * 14 13 11 16 16 C 1.50697 * 109.46896 * 154.99772 * 14 13 11 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99907 * 179.97438 * 16 14 13 19 19 N 1.31517 * 120.00219 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00146 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46873 * 60.00137 * 20 18 16 22 22 H 1.48503 * 109.47008 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46914 * 300.00305 * 20 18 16 24 24 C 1.52997 * 109.47007 * 274.99983 * 14 13 11 25 25 F 1.39905 * 109.47157 * 299.99894 * 24 14 13 26 26 F 1.39900 * 109.47010 * 180.02562 * 24 14 13 27 27 F 1.39897 * 109.47422 * 59.99976 * 24 14 13 28 28 C 1.51576 * 101.82326 * 25.42125 * 8 7 6 29 29 H 1.09001 * 111.11266 * 71.50135 * 28 8 7 30 30 C 1.50026 * 111.00060 * 119.77881 * 2 1 3 31 31 H 1.09003 * 109.47252 * 300.21937 * 1 2 3 32 32 H 1.09000 * 109.47335 * 60.21968 * 1 2 3 33 33 H 1.09002 * 109.47360 * 180.22134 * 1 2 3 34 34 H 1.09004 * 110.40302 * 234.10657 * 3 2 1 35 35 H 1.09001 * 110.40599 * 356.51732 * 3 2 1 36 36 H 1.09003 * 110.52429 * 328.56372 * 6 4 3 37 37 H 1.09001 * 110.52321 * 91.17392 * 6 4 3 38 38 H 1.08999 * 110.18999 * 247.85528 * 7 6 4 39 39 H 1.09007 * 110.18991 * 126.01598 * 7 6 4 40 40 H 0.97006 * 119.99377 * 272.56405 * 10 8 7 41 41 H 0.96997 * 119.99943 * 359.97438 * 13 11 10 42 42 H 0.96997 * 120.00148 * 179.97438 * 19 18 16 43 43 H 1.09006 * 110.80937 * 94.41633 * 30 2 1 44 44 H 1.09003 * 110.98061 * 330.97968 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0054 1.3975 0.0000 4 6 2.7365 1.5344 1.3014 5 1 1.9974 1.7122 2.0827 6 6 3.9442 2.3619 1.6148 7 6 4.6660 1.5633 2.7438 8 6 3.8884 0.2134 2.8733 9 1 3.1089 0.2831 3.6321 10 7 4.8034 -0.8926 3.1663 11 6 5.0466 -1.2457 4.4440 12 8 4.5063 -0.6466 5.3536 13 7 5.8889 -2.2628 4.7134 14 6 6.1528 -2.6470 6.1023 15 1 5.2471 -2.5148 6.6942 16 6 6.5788 -4.0917 6.1515 17 1 6.6465 -4.6661 5.2395 18 6 6.8830 -4.6798 7.3609 19 7 6.8010 -3.9802 8.4715 20 14 7.4117 -6.4704 7.4219 21 1 8.6454 -6.6500 6.6153 22 1 7.6791 -6.8598 8.8298 23 1 6.3302 -7.3249 6.8694 24 6 7.2673 -1.7669 6.6718 25 9 8.4297 -1.9366 5.9121 26 9 7.5197 -2.1342 7.9979 27 9 6.8719 -0.4258 6.6260 28 6 3.2868 0.0675 1.4897 29 1 4.0526 -0.1719 0.7519 30 6 2.0067 -0.6956 1.2157 31 1 -0.3634 0.5172 0.8880 32 1 -0.3634 0.5104 -0.8919 33 1 -0.3634 -1.0277 0.0040 34 1 2.7008 1.5376 -0.8276 35 1 1.1896 2.1177 -0.0621 36 1 4.5859 2.4488 0.7379 37 1 3.6493 3.3491 1.9707 38 1 4.6210 2.1151 3.6827 39 1 5.7034 1.3748 2.4670 40 1 5.2343 -1.3707 2.4405 41 1 6.3197 -2.7410 3.9877 42 1 7.0147 -4.3941 9.3223 43 1 2.2187 -1.7430 1.0005 44 1 1.3157 -0.6064 2.0539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649262473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:31 Heat of formation + Delta-G solvation = -146.540460 kcal Electronic energy + Delta-G solvation = -30618.960611 eV Core-core repulsion = 25964.295666 eV Total energy + Delta-G solvation = -4654.664946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.29747 -45.94960 -45.56857 -40.80970 -39.06526 -36.16465 -34.58096 -33.41096 -32.45734 -30.24283 -29.65824 -28.08137 -25.69597 -25.22056 -24.51447 -21.88582 -21.33625 -20.73500 -20.23517 -19.62876 -18.26915 -17.00742 -16.78244 -16.59835 -16.54618 -16.00938 -15.35007 -15.18727 -14.93495 -14.80045 -14.37636 -14.01203 -13.92492 -13.63611 -13.25931 -12.98062 -12.91675 -12.84637 -12.51772 -12.35175 -12.24709 -12.11661 -12.00510 -11.93216 -11.81122 -11.76814 -11.56470 -11.20005 -11.13564 -10.86585 -10.83011 -10.78012 -10.65648 -10.38728 -10.31390 -9.65519 -9.51054 -8.79284 -8.69865 -8.61390 -8.13945 -6.21849 -4.45793 3.15745 3.20876 3.25852 3.28701 3.61394 3.73556 3.84193 4.20319 4.44217 4.58990 4.66066 4.76578 4.93472 4.95337 5.01289 5.02468 5.12594 5.18638 5.24497 5.34355 5.42244 5.45476 5.51277 5.60017 5.67585 5.70679 5.84487 5.87643 5.92137 5.92673 6.05055 6.19430 6.22648 6.26762 6.49836 6.71833 6.85924 6.88092 7.23788 7.39842 7.64232 7.71806 8.50990 8.69099 9.16991 9.28106 10.69677 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.003025 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.735248 B = 9253.212716 C =10185.850182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.530 5.530 3 C 0.058 3.942 4 C -0.131 4.131 5 H 0.066 0.934 6 C -0.096 4.096 7 C -0.135 4.135 8 C 0.181 3.819 9 H 0.096 0.904 10 N -0.746 5.746 11 C 0.699 3.301 12 O -0.585 6.585 13 N -0.727 5.727 14 C 0.263 3.737 15 H 0.085 0.915 16 C -0.552 4.552 17 H 0.076 0.924 18 C 0.065 3.935 19 N -0.840 5.840 20 Si 0.915 3.085 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.416 3.584 25 F -0.211 7.211 26 F -0.138 7.138 27 F -0.217 7.217 28 C -0.121 4.121 29 H 0.093 0.907 30 C 0.052 3.948 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.393 0.607 41 H 0.394 0.606 42 H 0.268 0.732 43 H 0.085 0.915 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 8.255 -15.559 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.254 5.254 3 C -0.069 4.069 4 C -0.151 4.151 5 H 0.084 0.916 6 C -0.135 4.135 7 C -0.174 4.174 8 C 0.074 3.926 9 H 0.114 0.886 10 N -0.401 5.401 11 C 0.399 3.601 12 O -0.462 6.462 13 N -0.379 5.379 14 C 0.157 3.843 15 H 0.102 0.898 16 C -0.589 4.589 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.473 5.473 20 Si 0.742 3.258 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.359 3.641 25 F -0.193 7.193 26 F -0.119 7.119 27 F -0.199 7.199 28 C -0.140 4.140 29 H 0.111 0.889 30 C -0.075 4.075 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.227 0.773 41 H 0.227 0.773 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.676 8.529 -14.886 18.795 hybrid contribution 0.671 -0.696 0.294 1.010 sum -7.005 7.833 -14.592 17.982 Atomic orbital electron populations 1.22540 0.87939 1.02189 1.00543 1.65179 1.08024 1.13558 1.38651 1.22004 0.98506 0.89456 0.96942 1.21965 0.98098 0.96411 0.98642 0.91583 1.21307 0.95381 0.98108 0.98664 1.23407 0.99786 0.95507 0.98733 1.21044 0.91317 0.85398 0.94837 0.88599 1.45125 1.51065 1.37480 1.06430 1.16097 0.80273 0.80836 0.82912 1.90906 1.54763 1.56305 1.44234 1.45271 1.47830 1.34924 1.09883 1.19574 0.93279 0.93164 0.78298 0.89792 1.20845 1.50545 0.92979 0.94580 0.90559 1.25078 0.94668 0.99374 0.95270 1.70397 1.43428 1.35005 0.98470 0.86275 0.79197 0.82966 0.77410 1.19841 1.20892 1.19805 1.23190 0.84526 0.78070 0.78301 1.92982 1.53799 1.95449 1.77026 1.93400 1.94575 1.89652 1.34273 1.93070 1.90892 1.39339 1.96555 1.22770 0.97603 0.95915 0.97748 0.88876 1.22528 0.94941 0.98790 0.91226 0.95448 0.91387 0.91240 0.90279 0.92004 0.91376 0.91454 0.90864 0.90943 0.77348 0.77276 0.92083 0.89642 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.24 60.07 0.56 0.69 16 2 N -0.53 -5.02 5.57 -240.48 -1.34 -6.36 16 3 C 0.06 0.49 6.75 -3.80 -0.03 0.46 16 4 C -0.13 -1.18 2.62 -91.15 -0.24 -1.42 16 5 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 6 C -0.10 -0.85 6.72 -26.75 -0.18 -1.03 16 7 C -0.14 -1.58 6.69 -23.34 -0.16 -1.73 16 8 C 0.18 2.30 2.97 -66.86 -0.20 2.10 16 9 H 0.10 1.45 7.54 -51.93 -0.39 1.06 16 10 N -0.75 -10.70 5.16 -57.63 -0.30 -11.00 16 11 C 0.70 13.82 8.10 -86.92 -0.70 13.12 16 12 O -0.58 -13.98 14.55 5.30 0.08 -13.90 16 13 N -0.73 -14.82 4.99 -59.82 -0.30 -15.12 16 14 C 0.26 6.57 2.21 -69.09 -0.15 6.42 16 15 H 0.08 2.36 7.58 -51.93 -0.39 1.97 16 16 C -0.55 -14.09 8.47 -34.44 -0.29 -14.38 16 17 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 18 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 19 N -0.84 -23.11 9.50 55.43 0.53 -22.58 16 20 Si 0.92 20.08 29.54 -169.99 -5.02 15.06 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.42 10.77 2.81 37.16 0.10 10.88 16 25 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 26 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 27 F -0.22 -5.61 15.67 2.25 0.04 -5.57 16 28 C -0.12 -1.21 2.66 -89.45 -0.24 -1.45 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 30 C 0.05 0.52 6.49 -2.82 -0.02 0.51 16 31 H 0.03 0.22 8.12 -51.93 -0.42 -0.21 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.39 4.53 8.67 -40.82 -0.35 4.18 16 41 H 0.39 6.88 8.55 -40.82 -0.35 6.53 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.57 7.87 -51.93 -0.41 0.16 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -30.57 360.34 -8.93 -39.50 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.47 Total: 7.82 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: -1.64 Total: 15.76 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -1.41 Total: -55.06 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.90 kcal Atomic # 9 Polarization: -14.71 SS G_CDS: 0.10 Total: -14.60 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.57 -8.93 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649262473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.037 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds