Wall clock time and date at job start Tue Mar 31 2020 18:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.49689 * 110.99865 * 2 1 4 4 C 1.49896 * 105.07392 * 115.95146 * 3 2 1 5 5 H 1.09003 * 107.84822 * 280.68465 * 4 3 2 6 6 C 1.49717 * 128.72707 * 148.50981 * 4 3 2 7 7 C 1.55996 * 103.99154 * 209.93664 * 6 4 3 8 8 C 1.56327 * 105.77662 * 6.94044 * 7 6 4 9 9 H 1.09002 * 110.98948 * 267.27212 * 8 7 6 10 10 N 1.46502 * 110.96239 * 143.56034 * 8 7 6 11 11 C 1.34775 * 120.00368 * 92.55938 * 10 8 7 12 12 O 1.21576 * 119.99865 * 0.02562 * 11 10 8 13 13 N 1.34782 * 119.99752 * 180.02562 * 11 10 8 14 14 C 1.46500 * 119.99783 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47092 * 34.99932 * 14 13 11 16 16 C 1.50697 * 109.46896 * 154.99772 * 14 13 11 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99907 * 179.97438 * 16 14 13 19 19 N 1.31517 * 120.00219 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00146 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46873 * 60.00137 * 20 18 16 22 22 H 1.48503 * 109.47008 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46914 * 300.00305 * 20 18 16 24 24 C 1.52997 * 109.47007 * 274.99983 * 14 13 11 25 25 F 1.39905 * 109.47157 * 299.99894 * 24 14 13 26 26 F 1.39900 * 109.47010 * 180.02562 * 24 14 13 27 27 F 1.39897 * 109.47422 * 59.99976 * 24 14 13 28 28 C 1.51576 * 101.82326 * 25.42125 * 8 7 6 29 29 H 1.09001 * 111.11266 * 71.50135 * 28 8 7 30 30 C 1.50026 * 111.00060 * 119.77881 * 2 1 3 31 31 H 1.09003 * 109.47252 * 300.21937 * 1 2 3 32 32 H 1.09000 * 109.47335 * 60.21968 * 1 2 3 33 33 H 1.09002 * 109.47360 * 180.22134 * 1 2 3 34 34 H 1.09004 * 110.40302 * 234.10657 * 3 2 1 35 35 H 1.09001 * 110.40599 * 356.51732 * 3 2 1 36 36 H 1.09003 * 110.52429 * 328.56372 * 6 4 3 37 37 H 1.09001 * 110.52321 * 91.17392 * 6 4 3 38 38 H 1.08999 * 110.18999 * 247.85528 * 7 6 4 39 39 H 1.09007 * 110.18991 * 126.01598 * 7 6 4 40 40 H 0.97006 * 119.99377 * 272.56405 * 10 8 7 41 41 H 0.96997 * 119.99943 * 359.97438 * 13 11 10 42 42 H 0.96997 * 120.00148 * 179.97438 * 19 18 16 43 43 H 1.09006 * 110.80937 * 94.41633 * 30 2 1 44 44 H 1.09003 * 110.98061 * 330.97968 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0054 1.3975 0.0000 4 6 2.7365 1.5344 1.3014 5 1 1.9974 1.7122 2.0827 6 6 3.9442 2.3619 1.6148 7 6 4.6660 1.5633 2.7438 8 6 3.8884 0.2134 2.8733 9 1 3.1089 0.2831 3.6321 10 7 4.8034 -0.8926 3.1663 11 6 5.0466 -1.2457 4.4440 12 8 4.5063 -0.6466 5.3536 13 7 5.8889 -2.2628 4.7134 14 6 6.1528 -2.6470 6.1023 15 1 5.2471 -2.5148 6.6942 16 6 6.5788 -4.0917 6.1515 17 1 6.6465 -4.6661 5.2395 18 6 6.8830 -4.6798 7.3609 19 7 6.8010 -3.9802 8.4715 20 14 7.4117 -6.4704 7.4219 21 1 8.6454 -6.6500 6.6153 22 1 7.6791 -6.8598 8.8298 23 1 6.3302 -7.3249 6.8694 24 6 7.2673 -1.7669 6.6718 25 9 8.4297 -1.9366 5.9121 26 9 7.5197 -2.1342 7.9979 27 9 6.8719 -0.4258 6.6260 28 6 3.2868 0.0675 1.4897 29 1 4.0526 -0.1719 0.7519 30 6 2.0067 -0.6956 1.2157 31 1 -0.3634 0.5172 0.8880 32 1 -0.3634 0.5104 -0.8919 33 1 -0.3634 -1.0277 0.0040 34 1 2.7008 1.5376 -0.8276 35 1 1.1896 2.1177 -0.0621 36 1 4.5859 2.4488 0.7379 37 1 3.6493 3.3491 1.9707 38 1 4.6210 2.1151 3.6827 39 1 5.7034 1.3748 2.4670 40 1 5.2343 -1.3707 2.4405 41 1 6.3197 -2.7410 3.9877 42 1 7.0147 -4.3941 9.3223 43 1 2.2187 -1.7430 1.0005 44 1 1.3157 -0.6064 2.0539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649262473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:30 Heat of formation + Delta-G solvation = -168.300229 kcal Electronic energy + Delta-G solvation = -30619.904186 eV Core-core repulsion = 25964.295666 eV Total energy + Delta-G solvation = -4655.608520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.39428 -48.02762 -47.70832 -41.76061 -40.53286 -37.19913 -36.33392 -34.78434 -34.22460 -31.11170 -30.73467 -29.63414 -26.76650 -26.47872 -25.96921 -23.64497 -22.28241 -21.88769 -21.55713 -20.62311 -19.88411 -18.85980 -18.75665 -18.53180 -17.95871 -17.45083 -16.81974 -16.46204 -16.19590 -15.83161 -15.73482 -15.40452 -15.05069 -14.93864 -14.78917 -14.56706 -14.44278 -14.40190 -14.27382 -14.01190 -13.86051 -13.81444 -13.76777 -13.09129 -13.02185 -12.85979 -12.72857 -12.60866 -12.56947 -12.29589 -12.20993 -11.98238 -11.73198 -11.58363 -11.49750 -11.25850 -11.09149 -10.66716 -10.26745 -9.75641 -9.35603 -8.19916 -6.51010 1.47281 1.50128 1.57981 1.73995 2.15139 2.38061 2.57824 2.86443 2.95640 2.97542 3.32042 3.70540 3.80499 3.82576 3.89887 3.97731 4.20394 4.22350 4.26148 4.33234 4.43045 4.49543 4.53233 4.58274 4.64233 4.71419 4.85994 4.89414 4.98908 5.00860 5.10602 5.10911 5.19513 5.23287 5.41795 5.45133 5.53450 5.65106 5.66647 5.78557 6.03296 6.15944 6.54177 7.17579 7.22965 7.67995 8.72657 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.003025 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.735248 B = 9253.212716 C =10185.850182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.537 5.537 3 C 0.060 3.940 4 C -0.120 4.120 5 H 0.053 0.947 6 C -0.085 4.085 7 C -0.134 4.134 8 C 0.176 3.824 9 H 0.067 0.933 10 N -0.723 5.723 11 C 0.696 3.304 12 O -0.630 6.630 13 N -0.720 5.720 14 C 0.272 3.728 15 H 0.045 0.955 16 C -0.562 4.562 17 H 0.093 0.907 18 C 0.015 3.985 19 N -0.875 5.875 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.262 1.262 24 C 0.412 3.588 25 F -0.203 7.203 26 F -0.151 7.151 27 F -0.219 7.219 28 C -0.113 4.113 29 H 0.107 0.893 30 C 0.052 3.948 31 H 0.025 0.975 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.411 0.589 41 H 0.410 0.590 42 H 0.268 0.732 43 H 0.085 0.915 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 7.813 -18.308 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.261 5.261 3 C -0.067 4.067 4 C -0.140 4.140 5 H 0.071 0.929 6 C -0.123 4.123 7 C -0.173 4.173 8 C 0.070 3.930 9 H 0.085 0.915 10 N -0.379 5.379 11 C 0.396 3.604 12 O -0.511 6.511 13 N -0.374 5.374 14 C 0.164 3.836 15 H 0.062 0.938 16 C -0.599 4.599 17 H 0.111 0.889 18 C -0.191 4.191 19 N -0.509 5.509 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.187 1.187 24 C 0.356 3.644 25 F -0.185 7.185 26 F -0.133 7.133 27 F -0.201 7.201 28 C -0.133 4.133 29 H 0.125 0.875 30 C -0.075 4.075 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.248 0.752 41 H 0.246 0.754 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.462 8.094 -17.726 20.866 hybrid contribution 0.558 -0.492 1.134 1.357 sum -6.904 7.601 -16.591 19.512 Atomic orbital electron populations 1.22592 0.87126 1.02497 1.01111 1.65201 1.08905 1.14205 1.37832 1.22056 0.98975 0.89126 0.96500 1.21931 0.97809 0.95391 0.98914 0.92878 1.21234 0.95146 0.97860 0.98081 1.23364 1.00099 0.94866 0.99003 1.21157 0.90641 0.85527 0.95714 0.91463 1.44952 1.50529 1.37501 1.04877 1.16274 0.79765 0.80319 0.84054 1.90877 1.56331 1.57689 1.46176 1.44993 1.48295 1.35441 1.08678 1.19143 0.91257 0.93298 0.79942 0.93769 1.21204 1.50163 0.93177 0.95334 0.88920 1.26010 0.94515 1.03701 0.94850 1.70534 1.44462 1.36901 0.99030 0.85205 0.79147 0.77636 0.77301 1.18977 1.21068 1.18684 1.23363 0.85055 0.78084 0.77900 1.92981 1.53419 1.95417 1.76713 1.93372 1.94709 1.89800 1.35383 1.93061 1.90952 1.39566 1.96534 1.22657 0.97842 0.97023 0.95757 0.87535 1.22495 0.94726 0.98977 0.91336 0.95674 0.89968 0.91170 0.89194 0.90814 0.89410 0.90528 0.93097 0.90798 0.75239 0.75379 0.92178 0.89699 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.24 127.69 1.18 1.40 16 2 N -0.54 -9.05 5.57 -914.74 -5.10 -14.15 16 3 C 0.06 0.84 6.75 84.76 0.57 1.42 16 4 C -0.12 -1.95 2.62 -11.14 -0.03 -1.97 16 5 H 0.05 1.01 8.00 -2.39 -0.02 0.99 16 6 C -0.08 -1.32 6.72 30.58 0.21 -1.11 16 7 C -0.13 -3.04 6.69 32.79 0.22 -2.82 16 8 C 0.18 4.44 2.97 45.68 0.14 4.57 16 9 H 0.07 2.12 7.54 -2.39 -0.02 2.10 16 10 N -0.72 -20.34 5.16 -454.51 -2.35 -22.68 16 11 C 0.70 27.86 8.10 179.05 1.45 29.31 16 12 O -0.63 -31.28 14.55 -3.96 -0.06 -31.34 16 13 N -0.72 -29.36 4.99 -461.42 -2.30 -31.66 16 14 C 0.27 13.81 2.21 44.24 0.10 13.91 16 15 H 0.04 2.61 7.58 -2.39 -0.02 2.59 16 16 C -0.56 -28.47 8.47 25.60 0.22 -28.25 16 17 H 0.09 4.28 7.74 -2.91 -0.02 4.26 16 18 C 0.01 0.75 5.20 84.65 0.44 1.19 16 19 N -0.88 -48.92 9.50 21.45 0.20 -48.71 16 20 Si 0.98 40.51 29.54 68.60 2.03 42.54 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 22 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 24 C 0.41 21.73 2.81 71.98 0.20 21.93 16 25 F -0.20 -10.07 16.94 44.97 0.76 -9.31 16 26 F -0.15 -8.66 12.91 44.97 0.58 -8.08 16 27 F -0.22 -11.61 15.67 44.97 0.70 -10.91 16 28 C -0.11 -2.09 2.66 -10.04 -0.03 -2.12 16 29 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 30 C 0.05 0.98 6.49 85.21 0.55 1.54 16 31 H 0.02 0.36 8.12 -2.39 -0.02 0.34 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.66 8.09 -2.38 -0.02 1.64 16 40 H 0.41 8.73 8.67 -92.70 -0.80 7.92 16 41 H 0.41 13.81 8.55 -92.71 -0.79 13.02 16 42 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.04 0.89 7.87 -2.39 -0.02 0.87 16 Total: -1.00 -66.99 360.34 -0.87 -67.86 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.55 Total: 27.46 kcal Atomic # 6 Polarization: 33.77 SS G_CDS: 5.22 Total: 38.99 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -9.54 Total: -117.21 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.06 Total: -31.34 kcal Atomic # 9 Polarization: -30.34 SS G_CDS: 2.05 Total: -28.30 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -66.99 -0.87 -67.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649262473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.441 kcal (2) G-P(sol) polarization free energy of solvation -66.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds