Wall clock time and date at job start Tue Mar 31 2020 18:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47846 * 110.99912 * 2 1 4 4 C 1.54293 * 107.24344 * 215.00398 * 3 2 1 5 5 H 1.08996 * 112.69041 * 236.14384 * 4 3 2 6 6 C 1.54095 * 108.05947 * 110.97675 * 4 3 2 7 7 C 1.53448 * 106.48891 * 222.06515 * 6 4 3 8 8 C 1.53446 * 107.24615 * 17.70288 * 7 6 4 9 9 H 1.08994 * 109.83652 * 239.00621 * 8 7 6 10 10 N 1.46495 * 109.83802 * 118.10926 * 8 7 6 11 11 C 1.34775 * 120.00039 * 86.45529 * 10 8 7 12 12 O 1.21585 * 120.00056 * 0.02562 * 11 10 8 13 13 N 1.34784 * 120.00004 * 180.02562 * 11 10 8 14 14 C 1.46491 * 120.00022 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47557 * 34.99237 * 14 13 11 16 16 C 1.50698 * 109.47248 * 154.99879 * 14 13 11 17 17 H 1.08002 * 119.99766 * 116.81807 * 16 14 13 18 18 C 1.37873 * 120.00122 * 296.81712 * 16 14 13 19 19 N 1.31512 * 120.00327 * 174.11362 * 18 16 14 20 20 Si 1.86805 * 119.99596 * 354.10824 * 18 16 14 21 21 H 1.48497 * 109.47309 * 85.17338 * 20 18 16 22 22 H 1.48503 * 109.46929 * 205.17346 * 20 18 16 23 23 H 1.48498 * 109.47293 * 325.16969 * 20 18 16 24 24 C 1.53007 * 109.46891 * 274.99980 * 14 13 11 25 25 F 1.39902 * 109.46678 * 305.23112 * 24 14 13 26 26 F 1.39892 * 109.47460 * 65.23033 * 24 14 13 27 27 F 1.39895 * 109.47053 * 185.23761 * 24 14 13 28 28 C 1.53039 * 107.56114 * 358.60249 * 8 7 6 29 29 H 1.08998 * 111.90891 * 221.93811 * 28 8 7 30 30 C 1.48609 * 110.99909 * 242.50786 * 2 1 3 31 31 H 1.09001 * 109.46719 * 60.12249 * 1 2 3 32 32 H 1.08996 * 109.47107 * 180.12294 * 1 2 3 33 33 H 1.09000 * 109.47080 * 300.12570 * 1 2 3 34 34 H 1.09002 * 109.88473 * 95.59918 * 3 2 1 35 35 H 1.09002 * 109.88789 * 334.41460 * 3 2 1 36 36 H 1.09010 * 110.05352 * 102.81203 * 6 4 3 37 37 H 1.09002 * 110.09870 * 341.35207 * 6 4 3 38 38 H 1.08998 * 109.89262 * 258.29293 * 7 6 4 39 39 H 1.09011 * 110.02302 * 137.18477 * 7 6 4 40 40 H 0.97004 * 119.99955 * 266.46023 * 10 8 7 41 41 H 0.97002 * 119.99838 * 359.97438 * 13 11 10 42 42 H 0.96993 * 119.99822 * 180.02562 * 19 18 16 43 43 H 1.08993 * 110.71331 * 278.33491 * 30 2 1 44 44 H 1.09003 * 110.70412 * 41.57462 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.2896 1.3747 -0.8453 5 1 4.1533 1.7498 -0.2963 6 6 3.0173 2.1675 -2.1383 7 6 3.6691 1.3759 -3.2799 8 6 3.9161 -0.0477 -2.7633 9 1 4.9791 -0.2821 -2.8190 10 7 3.1530 -1.0070 -3.5654 11 6 3.6781 -1.5023 -4.7035 12 8 4.7855 -1.1531 -5.0644 13 7 2.9758 -2.3845 -5.4418 14 6 3.5468 -2.9232 -6.6786 15 1 4.6236 -3.0440 -6.5593 16 6 2.9216 -4.2610 -6.9796 17 1 2.3355 -4.3933 -7.8770 18 6 3.0979 -5.3158 -6.1094 19 7 2.4594 -6.4478 -6.3104 20 14 4.2438 -5.1369 -4.6450 21 1 3.5083 -4.5168 -3.5138 22 1 4.7398 -6.4763 -4.2381 23 1 5.3943 -4.2757 -5.0190 24 6 3.2667 -1.9581 -7.8323 25 9 1.8920 -1.7101 -7.9094 26 9 3.9458 -0.7555 -7.6096 27 9 3.7060 -2.5264 -9.0328 28 6 3.4468 -0.0985 -1.3075 29 1 4.1398 -0.6544 -0.6760 30 6 2.0016 -0.6405 -1.2307 31 1 -0.3633 0.5119 -0.8911 32 1 -0.3633 -1.0276 0.0022 33 1 -0.3633 0.5158 0.8889 34 1 2.2251 1.6906 1.0201 35 1 1.2686 2.0577 -0.4427 36 1 3.4633 3.1598 -2.0694 37 1 1.9437 2.2515 -2.3071 38 1 4.6158 1.8386 -3.5588 39 1 3.0026 1.3470 -4.1421 40 1 2.2696 -1.2858 -3.2773 41 1 2.0925 -2.6633 -5.1537 42 1 2.5832 -7.1897 -5.6980 43 1 2.0018 -1.7258 -1.1313 44 1 1.4276 -0.3325 -2.1047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649262474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:34 Heat of formation + Delta-G solvation = -174.704499 kcal Electronic energy + Delta-G solvation = -31274.089393 eV Core-core repulsion = 26618.203163 eV Total energy + Delta-G solvation = -4655.886230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.05634 -46.56020 -46.55063 -40.80140 -39.06475 -36.04794 -34.74980 -33.52212 -32.42888 -30.24858 -29.91706 -28.40423 -25.95868 -25.39777 -24.99030 -22.08664 -21.32873 -20.67957 -19.86477 -19.48472 -18.45861 -17.72960 -17.45825 -16.87246 -16.84091 -16.41384 -16.02927 -15.17203 -14.80758 -14.71487 -14.42235 -14.22372 -13.91716 -13.50091 -13.44167 -13.39816 -13.25247 -13.01363 -12.98903 -12.91651 -12.74881 -12.73123 -12.65044 -11.99789 -11.86811 -11.83347 -11.67808 -11.56591 -11.14865 -10.98785 -10.90307 -10.77249 -10.64178 -10.55887 -10.18121 -9.89190 -9.64299 -8.99180 -8.83378 -8.65982 -8.31858 -6.51197 -4.64325 3.02627 3.17104 3.22632 3.33518 3.61563 3.73349 3.97026 4.12280 4.13356 4.33103 4.45989 4.61965 4.92844 4.94911 4.99843 5.05878 5.08175 5.13444 5.14923 5.20852 5.23879 5.33309 5.39865 5.43821 5.46108 5.49598 5.62722 5.64979 5.77243 5.81928 5.91263 6.03063 6.15957 6.23031 6.41907 6.55648 6.73842 6.83732 6.91304 7.14615 7.44804 7.91764 8.52266 8.60086 9.03106 9.15048 10.56980 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.004257 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.884446 B = 6576.594593 C = 7558.763550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.521 5.521 3 C 0.039 3.961 4 C -0.097 4.097 5 H 0.095 0.905 6 C -0.118 4.118 7 C -0.133 4.133 8 C 0.169 3.831 9 H 0.092 0.908 10 N -0.750 5.750 11 C 0.690 3.310 12 O -0.588 6.588 13 N -0.732 5.732 14 C 0.220 3.780 15 H 0.091 0.909 16 C -0.537 4.537 17 H 0.095 0.905 18 C 0.097 3.903 19 N -0.863 5.863 20 Si 0.882 3.118 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.258 1.258 24 C 0.440 3.560 25 F -0.191 7.191 26 F -0.192 7.192 27 F -0.185 7.185 28 C -0.096 4.096 29 H 0.096 0.904 30 C 0.036 3.964 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.393 0.607 41 H 0.396 0.604 42 H 0.274 0.726 43 H 0.087 0.913 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.388 13.839 12.156 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.244 5.244 3 C -0.089 4.089 4 C -0.116 4.116 5 H 0.113 0.887 6 C -0.156 4.156 7 C -0.172 4.172 8 C 0.063 3.937 9 H 0.110 0.890 10 N -0.409 5.409 11 C 0.391 3.609 12 O -0.466 6.466 13 N -0.388 5.388 14 C 0.116 3.884 15 H 0.108 0.892 16 C -0.575 4.575 17 H 0.113 0.887 18 C -0.112 4.112 19 N -0.496 5.496 20 Si 0.709 3.291 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.182 1.182 24 C 0.385 3.615 25 F -0.173 7.173 26 F -0.174 7.174 27 F -0.167 7.167 28 C -0.115 4.115 29 H 0.115 0.885 30 C -0.092 4.092 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.229 0.771 41 H 0.232 0.768 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.269 13.685 12.296 18.441 hybrid contribution -0.780 0.325 0.106 0.851 sum -2.049 14.010 12.402 18.822 Atomic orbital electron populations 1.22535 0.87801 1.02429 1.00687 1.64747 1.08137 1.14859 1.36700 1.23097 0.95437 0.89932 1.00395 1.22719 0.97821 0.94965 0.96080 0.88715 1.22269 1.00565 0.98858 0.93860 1.22402 1.01566 0.94992 0.98242 1.20987 0.97079 0.87822 0.87842 0.88973 1.45654 1.21339 1.48809 1.25104 1.16462 0.84818 0.79388 0.80250 1.90883 1.19602 1.63932 1.72172 1.46812 1.21270 1.45584 1.25144 1.20107 0.99380 0.90808 0.78056 0.89169 1.20825 1.35531 0.90409 1.10714 0.88725 1.24908 0.94322 0.94550 0.97467 1.69878 1.38857 1.03574 1.37309 0.86731 0.82325 0.77632 0.82461 1.19695 1.21411 1.18235 1.21564 0.73482 0.80926 0.85558 1.93074 1.32587 1.94865 1.96780 1.93147 1.80194 1.49361 1.94694 1.93102 1.89472 1.84901 1.49195 1.22676 0.96815 0.96356 0.95665 0.88542 1.23230 0.94516 1.00316 0.91161 0.95302 0.91057 0.91378 0.90544 0.93347 0.91482 0.91993 0.91017 0.90998 0.77089 0.76814 0.91571 0.89498 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.39 60.07 0.56 0.68 16 2 N -0.52 -5.19 5.54 -238.76 -1.32 -6.51 16 3 C 0.04 0.34 6.26 -2.63 -0.02 0.32 16 4 C -0.10 -0.86 4.06 -88.20 -0.36 -1.22 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 6 C -0.12 -1.09 6.11 -25.93 -0.16 -1.25 16 7 C -0.13 -1.60 6.55 -26.27 -0.17 -1.77 16 8 C 0.17 2.23 3.05 -67.68 -0.21 2.02 16 9 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 10 N -0.75 -11.45 4.73 -58.43 -0.28 -11.72 16 11 C 0.69 13.67 7.94 -86.91 -0.69 12.98 16 12 O -0.59 -13.52 14.57 5.29 0.08 -13.44 16 13 N -0.73 -14.98 3.20 -59.81 -0.19 -15.17 16 14 C 0.22 5.11 1.41 -69.08 -0.10 5.01 16 15 H 0.09 2.24 6.29 -51.93 -0.33 1.92 16 16 C -0.54 -13.75 8.64 -34.44 -0.30 -14.05 16 17 H 0.09 2.64 7.91 -52.49 -0.42 2.23 16 18 C 0.10 2.51 5.46 -17.82 -0.10 2.41 16 19 N -0.86 -23.63 13.96 55.43 0.77 -22.85 16 20 Si 0.88 20.42 26.13 -169.99 -4.44 15.98 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.26 -6.25 6.55 56.52 0.37 -5.87 16 24 C 0.44 9.83 2.79 37.16 0.10 9.94 16 25 F -0.19 -4.14 16.97 2.25 0.04 -4.10 16 26 F -0.19 -4.29 15.84 2.25 0.04 -4.25 16 27 F -0.19 -4.17 16.83 2.25 0.04 -4.13 16 28 C -0.10 -1.02 3.81 -88.62 -0.34 -1.36 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 C 0.04 0.38 4.42 -2.07 -0.01 0.37 16 31 H 0.03 0.24 8.01 -51.93 -0.42 -0.18 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.40 6.70 -51.93 -0.35 0.05 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.06 0.58 7.19 -51.93 -0.37 0.20 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.99 7.90 -51.92 -0.41 0.58 16 40 H 0.39 5.18 5.83 -40.82 -0.24 4.94 16 41 H 0.40 7.45 8.61 -40.82 -0.35 7.10 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.56 6.52 -51.93 -0.34 0.22 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -29.41 354.42 -7.86 -37.27 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.16 Total: 9.51 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: -1.77 Total: 14.09 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -1.02 Total: -56.26 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 0.11 Total: -12.49 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.44 Total: 15.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.41 -7.86 -37.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649262474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.435 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds