Wall clock time and date at job start Tue Mar 31 2020 18:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.47846 * 110.99912 * 2 1 4 4 C 1.54293 * 107.24344 * 215.00398 * 3 2 1 5 5 H 1.08996 * 112.69041 * 236.14384 * 4 3 2 6 6 C 1.54095 * 108.05947 * 110.97675 * 4 3 2 7 7 C 1.53448 * 106.48891 * 222.06515 * 6 4 3 8 8 C 1.53446 * 107.24615 * 17.70288 * 7 6 4 9 9 H 1.08994 * 109.83652 * 239.00621 * 8 7 6 10 10 N 1.46495 * 109.83802 * 118.10926 * 8 7 6 11 11 C 1.34775 * 120.00039 * 86.45529 * 10 8 7 12 12 O 1.21585 * 120.00056 * 0.02562 * 11 10 8 13 13 N 1.34784 * 120.00004 * 180.02562 * 11 10 8 14 14 C 1.46491 * 120.00022 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47557 * 34.99237 * 14 13 11 16 16 C 1.50698 * 109.47248 * 154.99879 * 14 13 11 17 17 H 1.08002 * 119.99766 * 116.81807 * 16 14 13 18 18 C 1.37873 * 120.00122 * 296.81712 * 16 14 13 19 19 N 1.31512 * 120.00327 * 174.11362 * 18 16 14 20 20 Si 1.86805 * 119.99596 * 354.10824 * 18 16 14 21 21 H 1.48497 * 109.47309 * 85.17338 * 20 18 16 22 22 H 1.48503 * 109.46929 * 205.17346 * 20 18 16 23 23 H 1.48498 * 109.47293 * 325.16969 * 20 18 16 24 24 C 1.53007 * 109.46891 * 274.99980 * 14 13 11 25 25 F 1.39902 * 109.46678 * 305.23112 * 24 14 13 26 26 F 1.39892 * 109.47460 * 65.23033 * 24 14 13 27 27 F 1.39895 * 109.47053 * 185.23761 * 24 14 13 28 28 C 1.53039 * 107.56114 * 358.60249 * 8 7 6 29 29 H 1.08998 * 111.90891 * 221.93811 * 28 8 7 30 30 C 1.48609 * 110.99909 * 242.50786 * 2 1 3 31 31 H 1.09001 * 109.46719 * 60.12249 * 1 2 3 32 32 H 1.08996 * 109.47107 * 180.12294 * 1 2 3 33 33 H 1.09000 * 109.47080 * 300.12570 * 1 2 3 34 34 H 1.09002 * 109.88473 * 95.59918 * 3 2 1 35 35 H 1.09002 * 109.88789 * 334.41460 * 3 2 1 36 36 H 1.09010 * 110.05352 * 102.81203 * 6 4 3 37 37 H 1.09002 * 110.09870 * 341.35207 * 6 4 3 38 38 H 1.08998 * 109.89262 * 258.29293 * 7 6 4 39 39 H 1.09011 * 110.02302 * 137.18477 * 7 6 4 40 40 H 0.97004 * 119.99955 * 266.46023 * 10 8 7 41 41 H 0.97002 * 119.99838 * 359.97438 * 13 11 10 42 42 H 0.96993 * 119.99822 * 180.02562 * 19 18 16 43 43 H 1.08993 * 110.71331 * 278.33491 * 30 2 1 44 44 H 1.09003 * 110.70412 * 41.57462 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.2896 1.3747 -0.8453 5 1 4.1533 1.7498 -0.2963 6 6 3.0173 2.1675 -2.1383 7 6 3.6691 1.3759 -3.2799 8 6 3.9161 -0.0477 -2.7633 9 1 4.9791 -0.2821 -2.8190 10 7 3.1530 -1.0070 -3.5654 11 6 3.6781 -1.5023 -4.7035 12 8 4.7855 -1.1531 -5.0644 13 7 2.9758 -2.3845 -5.4418 14 6 3.5468 -2.9232 -6.6786 15 1 4.6236 -3.0440 -6.5593 16 6 2.9216 -4.2610 -6.9796 17 1 2.3355 -4.3933 -7.8770 18 6 3.0979 -5.3158 -6.1094 19 7 2.4594 -6.4478 -6.3104 20 14 4.2438 -5.1369 -4.6450 21 1 3.5083 -4.5168 -3.5138 22 1 4.7398 -6.4763 -4.2381 23 1 5.3943 -4.2757 -5.0190 24 6 3.2667 -1.9581 -7.8323 25 9 1.8920 -1.7101 -7.9094 26 9 3.9458 -0.7555 -7.6096 27 9 3.7060 -2.5264 -9.0328 28 6 3.4468 -0.0985 -1.3075 29 1 4.1398 -0.6544 -0.6760 30 6 2.0016 -0.6405 -1.2307 31 1 -0.3633 0.5119 -0.8911 32 1 -0.3633 -1.0276 0.0022 33 1 -0.3633 0.5158 0.8889 34 1 2.2251 1.6906 1.0201 35 1 1.2686 2.0577 -0.4427 36 1 3.4633 3.1598 -2.0694 37 1 1.9437 2.2515 -2.3071 38 1 4.6158 1.8386 -3.5588 39 1 3.0026 1.3470 -4.1421 40 1 2.2696 -1.2858 -3.2773 41 1 2.0925 -2.6633 -5.1537 42 1 2.5832 -7.1897 -5.6980 43 1 2.0018 -1.7258 -1.1313 44 1 1.4276 -0.3325 -2.1047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649262474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:33 Heat of formation + Delta-G solvation = -194.967065 kcal Electronic energy + Delta-G solvation = -31274.968043 eV Core-core repulsion = 26618.203163 eV Total energy + Delta-G solvation = -4656.764881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.88428 -48.39011 -48.36862 -41.83420 -40.46250 -37.19485 -36.37514 -34.78848 -34.29405 -31.38926 -30.95610 -29.75531 -26.95156 -26.85544 -26.15799 -23.61684 -22.53120 -21.89612 -20.98519 -20.48306 -20.16633 -19.41248 -19.14776 -18.64436 -18.33908 -17.72607 -17.36379 -16.42308 -16.30058 -15.94088 -15.52361 -15.40040 -15.28071 -15.25970 -14.97907 -14.84814 -14.82357 -14.57533 -14.57013 -14.50179 -14.17683 -14.12608 -13.76693 -13.66254 -13.09014 -12.87115 -12.66222 -12.52823 -12.49636 -12.39488 -12.08683 -11.88897 -11.75712 -11.69718 -11.57745 -11.47612 -11.34494 -10.98271 -10.35973 -9.86368 -9.38721 -8.53960 -6.71184 1.23507 1.33100 1.44508 1.62820 1.92502 2.15937 2.26795 2.81470 2.98179 3.15050 3.22190 3.35124 3.38817 3.57605 3.65572 3.70740 4.15685 4.16542 4.22366 4.31539 4.40521 4.43248 4.51069 4.54950 4.63218 4.64591 4.69686 4.83603 4.94211 4.98504 5.00968 5.03714 5.11082 5.13241 5.24461 5.40644 5.41358 5.59913 5.83302 5.85250 6.03299 6.07370 6.42583 6.99503 7.07472 7.57221 8.58268 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.004257 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.884446 B = 6576.594593 C = 7558.763550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.531 5.531 3 C 0.040 3.960 4 C -0.089 4.089 5 H 0.111 0.889 6 C -0.108 4.108 7 C -0.130 4.130 8 C 0.165 3.835 9 H 0.072 0.928 10 N -0.734 5.734 11 C 0.690 3.310 12 O -0.620 6.620 13 N -0.731 5.731 14 C 0.230 3.770 15 H 0.075 0.925 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.066 3.934 19 N -0.900 5.900 20 Si 0.933 3.067 21 H -0.251 1.251 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.444 3.556 25 F -0.186 7.186 26 F -0.190 7.190 27 F -0.187 7.187 28 C -0.092 4.092 29 H 0.097 0.903 30 C 0.036 3.964 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.405 0.595 41 H 0.406 0.594 42 H 0.280 0.720 43 H 0.080 0.920 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 15.437 14.446 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.255 5.255 3 C -0.087 4.087 4 C -0.108 4.108 5 H 0.129 0.871 6 C -0.146 4.146 7 C -0.169 4.169 8 C 0.059 3.941 9 H 0.091 0.909 10 N -0.392 5.392 11 C 0.390 3.610 12 O -0.500 6.500 13 N -0.387 5.387 14 C 0.125 3.875 15 H 0.093 0.907 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.140 4.140 19 N -0.535 5.535 20 Si 0.758 3.242 21 H -0.175 1.175 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.388 3.612 25 F -0.168 7.168 26 F -0.172 7.172 27 F -0.169 7.169 28 C -0.112 4.112 29 H 0.116 0.884 30 C -0.092 4.092 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.243 0.757 41 H 0.243 0.757 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.686 15.304 14.632 21.240 hybrid contribution -0.675 -0.118 -0.641 0.939 sum -2.361 15.186 13.991 20.783 Atomic orbital electron populations 1.22574 0.86988 1.02618 1.01341 1.64755 1.09016 1.15681 1.36041 1.23137 0.95201 0.89368 1.01009 1.22735 0.98745 0.93318 0.96002 0.87126 1.22215 1.00514 0.99224 0.92638 1.22337 1.01249 0.94616 0.98730 1.21171 0.95830 0.87836 0.89222 0.90946 1.45569 1.21831 1.48252 1.23577 1.16493 0.84285 0.79164 0.81066 1.90865 1.21045 1.64949 1.73187 1.46335 1.21723 1.46043 1.24619 1.19709 0.98309 0.90188 0.79333 0.90710 1.20741 1.35283 0.91885 1.09895 0.91645 1.25407 0.95115 0.94120 0.99400 1.69942 1.40406 1.04435 1.38682 0.85945 0.80257 0.77404 0.80640 1.17461 1.21068 1.19965 1.21403 0.73719 0.80834 0.85250 1.93082 1.32127 1.94810 1.96740 1.93151 1.80200 1.49136 1.94675 1.93097 1.89525 1.84972 1.49275 1.22633 0.96886 0.98029 0.93627 0.88436 1.23171 0.94365 1.00050 0.91651 0.95142 0.91192 0.90194 0.89463 0.92643 0.89760 0.91731 0.91441 0.92812 0.75661 0.75674 0.91066 0.90197 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.39 127.69 1.20 1.39 16 2 N -0.53 -9.15 5.54 -909.30 -5.04 -14.19 16 3 C 0.04 0.57 6.26 86.56 0.54 1.11 16 4 C -0.09 -1.30 4.06 -9.23 -0.04 -1.34 16 5 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.11 -1.69 6.11 31.12 0.19 -1.50 16 7 C -0.13 -2.95 6.55 30.89 0.20 -2.75 16 8 C 0.16 4.14 3.05 45.15 0.14 4.27 16 9 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 10 N -0.73 -21.47 4.73 -457.05 -2.16 -23.63 16 11 C 0.69 26.76 7.94 179.05 1.42 28.18 16 12 O -0.62 -28.35 14.57 -3.98 -0.06 -28.41 16 13 N -0.73 -29.41 3.20 -461.41 -1.48 -30.88 16 14 C 0.23 10.68 1.41 44.25 0.06 10.75 16 15 H 0.08 3.75 6.29 -2.39 -0.02 3.73 16 16 C -0.54 -27.97 8.64 25.60 0.22 -27.75 16 17 H 0.07 3.74 7.91 -2.91 -0.02 3.72 16 18 C 0.07 3.41 5.46 84.65 0.46 3.88 16 19 N -0.90 -49.54 13.96 21.45 0.30 -49.24 16 20 Si 0.93 41.82 26.13 68.60 1.79 43.61 16 21 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.27 -13.04 6.55 99.48 0.65 -12.39 16 24 C 0.44 19.78 2.79 71.98 0.20 19.98 16 25 F -0.19 -7.97 16.97 44.97 0.76 -7.20 16 26 F -0.19 -8.40 15.84 44.97 0.71 -7.69 16 27 F -0.19 -8.47 16.83 44.97 0.76 -7.71 16 28 C -0.09 -1.77 3.81 -9.50 -0.04 -1.81 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 C 0.04 0.68 4.42 86.50 0.38 1.06 16 31 H 0.03 0.43 8.01 -2.39 -0.02 0.41 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 0.72 6.70 -2.39 -0.02 0.70 16 36 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.01 7.19 -2.39 -0.02 0.99 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.42 7.90 -2.38 -0.02 1.40 16 40 H 0.40 10.00 5.83 -92.71 -0.54 9.46 16 41 H 0.41 14.84 8.61 -92.71 -0.80 14.04 16 42 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.05 0.98 6.52 -2.39 -0.02 0.96 16 Total: -1.00 -62.44 354.42 0.20 -62.24 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.34 Total: 27.64 kcal Atomic # 6 Polarization: 30.51 SS G_CDS: 4.95 Total: 35.46 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -8.38 Total: -117.94 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.06 Total: -28.41 kcal Atomic # 9 Polarization: -24.84 SS G_CDS: 2.23 Total: -22.61 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.79 Total: 43.61 kcal Total: -62.44 0.20 -62.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649262474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.723 kcal (2) G-P(sol) polarization free energy of solvation -62.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds