Wall clock time and date at job start Tue Mar 31 2020 18:40:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.46906 * 111.00079 * 2 1
4 4 C 1.50698 * 109.46821 * 293.95714 * 3 2 1
5 5 H 1.07997 * 120.00745 * 359.97438 * 4 3 2
6 6 C 1.37881 * 119.99697 * 180.02562 * 4 3 2
7 7 N 1.31517 * 119.99967 * 359.97438 * 6 4 3
8 8 Si 1.86799 * 120.00106 * 179.97438 * 6 4 3
9 9 H 1.48503 * 109.46842 * 89.99991 * 8 6 4
10 10 H 1.48498 * 109.47528 * 209.99910 * 8 6 4
11 11 H 1.48502 * 109.47368 * 330.00273 * 8 6 4
12 12 C 1.46892 * 111.00010 * 123.95093 * 2 1 3
13 13 C 1.53002 * 109.47225 * 164.06584 * 12 2 1
14 14 H 1.09006 * 109.46478 * 58.46830 * 13 12 2
15 15 O 1.42899 * 109.47213 * 298.46956 * 13 12 2
16 16 C 1.52995 * 109.47518 * 178.46415 * 13 12 2
17 17 N 1.46502 * 109.47529 * 185.00199 * 16 13 12
18 18 N 1.28727 * 125.34292 * 269.70054 * 17 16 13
19 19 N 1.28981 * 108.94775 * 179.82523 * 18 17 16
20 20 C 1.34057 * 107.26375 * 0.42627 * 19 18 17
21 21 C 1.48443 * 126.67223 * 179.71996 * 20 19 18
22 22 C 1.39319 * 120.09242 * 179.75242 * 21 20 19
23 23 C 1.37984 * 119.90756 * 179.72213 * 22 21 20
24 24 C 1.38543 * 120.09298 * 0.54623 * 23 22 21
25 25 F 1.35098 * 119.91047 * 179.70092 * 24 23 22
26 26 C 1.38550 * 120.18258 * 359.73004 * 24 23 22
27 27 C 1.37980 * 120.09425 * 359.97438 * 26 24 23
28 28 N 1.28871 * 125.33790 * 90.00235 * 17 16 13
29 29 H 1.09009 * 109.47307 * 301.47459 * 1 2 3
30 30 H 1.09003 * 109.47523 * 61.46707 * 1 2 3
31 31 H 1.08997 * 109.47702 * 181.47278 * 1 2 3
32 32 H 1.09002 * 109.46705 * 53.95028 * 3 2 1
33 33 H 1.08992 * 109.47324 * 173.95392 * 3 2 1
34 34 H 0.97002 * 119.99617 * 180.02562 * 7 6 4
35 35 H 1.08996 * 109.47895 * 284.06966 * 12 2 1
36 36 H 1.09002 * 109.47074 * 44.07035 * 12 2 1
37 37 H 0.96695 * 114.00173 * 299.99805 * 15 13 12
38 38 H 1.09004 * 109.47327 * 305.00976 * 16 13 12
39 39 H 1.09010 * 109.47049 * 65.00309 * 16 13 12
40 40 H 1.07995 * 120.04191 * 359.97438 * 22 21 20
41 41 H 1.08004 * 119.95109 * 180.25282 * 23 22 21
42 42 H 1.08000 * 119.95201 * 179.97438 * 26 24 23
43 43 H 1.07991 * 120.04552 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3715 0.0000
4 6 1.6368 2.0471 -1.2984
5 1 1.0745 1.5113 -2.0488
6 6 2.0276 3.3492 -1.5289
7 7 2.7128 4.0016 -0.6154
8 14 1.5838 4.1866 -3.1386
9 1 0.2717 4.8675 -2.9969
10 1 2.6264 5.1873 -3.4800
11 1 1.5002 3.1706 -4.2185
12 6 1.9954 -0.7659 1.1376
13 6 3.4731 -1.0827 0.8990
14 1 4.0277 -0.1531 0.7702
15 8 3.6049 -1.8829 -0.2775
16 6 4.0314 -1.8472 2.1010
17 7 5.4723 -2.0461 1.9269
18 7 6.0201 -3.0588 1.3510
19 7 7.3010 -2.9090 1.3697
20 6 7.5571 -1.7515 1.9957
21 6 8.8942 -1.1636 2.2601
22 6 9.0019 0.0577 2.9219
23 6 10.2469 0.5980 3.1707
24 6 11.3886 -0.0668 2.7535
25 9 12.6055 0.4685 2.9937
26 6 11.2858 -1.2787 2.0900
27 6 10.0449 -1.8289 1.8425
28 7 6.3907 -1.2374 2.3312
29 1 -0.3634 0.5366 0.8765
30 1 -0.3634 0.4909 -0.9028
31 1 -0.3634 -1.0273 0.0264
32 1 1.5610 1.9274 0.8309
33 1 3.0797 1.3445 0.1082
34 1 2.9874 4.9177 -0.7774
35 1 1.8924 -0.1786 2.0500
36 1 1.4363 -1.6960 1.2392
37 1 3.1356 -2.7272 -0.2335
38 1 3.8508 -1.2752 3.0112
39 1 3.5374 -2.8160 2.1767
40 1 8.1122 0.5787 3.2432
41 1 10.3313 1.5427 3.6873
42 1 12.1783 -1.7935 1.7660
43 1 9.9657 -2.7738 1.3256
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001649835015.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:40:11
Heat of formation + Delta-G solvation = 41.964854 kcal
Electronic energy + Delta-G solvation = -27745.149899 eV
Core-core repulsion = 23549.348343 eV
Total energy + Delta-G solvation = -4195.801555 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 335.150 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-49.97364 -45.36286 -40.06316 -39.60482 -37.35827 -35.82689 -34.63828 -34.52737
-32.41766 -32.16443 -30.94751 -29.43309 -28.29645 -25.95924 -25.46562 -24.76849
-23.82563 -22.87076 -22.69667 -21.83210 -19.20452 -18.71176 -18.52641 -18.46154
-17.73093 -17.22023 -16.99120 -16.67528 -16.63230 -16.54605 -16.10765 -15.52315
-15.39207 -15.13243 -14.95325 -14.59955 -14.39139 -14.25980 -14.00198 -13.91442
-13.73341 -13.34391 -13.14457 -12.97163 -12.87831 -12.70591 -12.60716 -12.49131
-12.30558 -12.27278 -12.19421 -11.93623 -11.85746 -11.58412 -11.34185 -10.92587
-10.62714 -10.20217 -9.57773 -8.97402 -8.23107 -6.31857 -0.44585 0.17627
0.18971 0.87621 1.23999 1.37479 1.39548 1.50645 2.37852 2.56956
2.61941 3.03323 3.08233 3.10659 3.15992 3.38725 3.69177 3.71646
3.82345 3.85323 4.00060 4.13391 4.18552 4.23090 4.28461 4.38354
4.55902 4.62282 4.63085 4.78433 4.82388 4.89761 4.90651 5.02295
5.05130 5.10506 5.17704 5.17965 5.30557 5.32841 5.62770 5.74150
6.04534 6.31155 6.62284 6.84137 6.91774 7.22092 7.37603 8.87698
Molecular weight = 335.15amu
Principal moments of inertia in cm(-1)
A = 0.010744 B = 0.002672 C = 0.002259
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2605.379947 B =10477.093766 C =12392.425647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 N -0.545 5.545
3 C 0.209 3.791
4 C -0.523 4.523
5 H 0.060 0.940
6 C 0.001 3.999
7 N -0.934 5.934
8 Si 0.964 3.036
9 H -0.269 1.269
10 H -0.284 1.284
11 H -0.268 1.268
12 C 0.031 3.969
13 C 0.109 3.891
14 H 0.063 0.937
15 O -0.558 6.558
16 C 0.093 3.907
17 N -0.118 5.118
18 N -0.054 5.054
19 N -0.298 5.298
20 C 0.198 3.802
21 C -0.040 4.040
22 C -0.058 4.058
23 C -0.152 4.152
24 C 0.107 3.893
25 F -0.139 7.139
26 C -0.147 4.147
27 C -0.050 4.050
28 N -0.314 5.314
29 H 0.012 0.988
30 H 0.051 0.949
31 H 0.088 0.912
32 H -0.035 1.035
33 H 0.001 0.999
34 H 0.263 0.737
35 H 0.045 0.955
36 H 0.118 0.882
37 H 0.389 0.611
38 H 0.147 0.853
39 H 0.166 0.834
40 H 0.143 0.857
41 H 0.161 0.839
42 H 0.169 0.831
43 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.809 -14.181 11.205 20.564
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 N -0.269 5.269
3 C 0.082 3.918
4 C -0.561 4.561
5 H 0.078 0.922
6 C -0.197 4.197
7 N -0.574 5.574
8 Si 0.789 3.211
9 H -0.194 1.194
10 H -0.209 1.209
11 H -0.192 1.192
12 C -0.099 4.099
13 C 0.047 3.953
14 H 0.082 0.918
15 O -0.365 6.365
16 C -0.026 4.026
17 N -0.031 5.031
18 N -0.047 5.047
19 N -0.169 5.169
20 C -0.081 4.081
21 C -0.043 4.043
22 C -0.078 4.078
23 C -0.171 4.171
24 C 0.087 3.913
25 F -0.117 7.117
26 C -0.166 4.166
27 C -0.071 4.071
28 N -0.165 5.165
29 H 0.031 0.969
30 H 0.070 0.930
31 H 0.107 0.893
32 H -0.018 1.018
33 H 0.019 0.981
34 H 0.072 0.928
35 H 0.063 0.937
36 H 0.136 0.864
37 H 0.239 0.761
38 H 0.165 0.835
39 H 0.183 0.817
40 H 0.161 0.839
41 H 0.179 0.821
42 H 0.186 0.814
43 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 9.881 -14.202 10.398 20.185
hybrid contribution -0.258 1.464 0.335 1.524
sum 9.623 -12.738 10.733 19.237
Atomic orbital electron populations
1.22217 0.86831 1.01530 1.00007 1.61853 1.08292 1.15066 1.41704
1.19385 0.93546 0.84068 0.94766 1.21485 1.34610 0.97363 1.02634
0.92177 1.25883 0.95110 0.98218 1.00528 1.70071 1.39389 1.11832
1.36131 0.85453 0.78076 0.78114 0.79439 1.19446 1.20925 1.19224
1.22699 0.94158 1.00321 0.92692 1.22056 0.96208 0.93118 0.83886
0.91844 1.86730 1.76208 1.34923 1.38590 1.23546 0.69167 1.07452
1.02391 1.50194 1.10463 1.10070 1.32340 1.78800 1.01847 1.11329
1.12685 1.75933 1.04941 1.17050 1.18969 1.23850 0.93738 0.91509
0.99033 1.17494 0.86619 0.96313 1.03889 1.21137 0.98433 0.93161
0.95089 1.21266 0.90336 1.02370 1.03092 1.18031 0.80200 0.93776
0.99259 1.91515 1.41937 1.85890 1.92389 1.21306 0.99451 0.95000
1.00802 1.21159 0.89769 0.99958 0.96164 1.74873 0.97561 1.20794
1.23249 0.96894 0.93047 0.89311 1.01768 0.98144 0.92780 0.93654
0.86358 0.76115 0.83526 0.81651 0.83943 0.82106 0.81380 0.82927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.43 9.32 127.69 1.19 2.62 16
2 N -0.55 -21.41 4.60 -927.06 -4.27 -25.67 16
3 C 0.21 10.80 4.57 85.56 0.39 11.19 16
4 C -0.52 -29.70 8.53 25.60 0.22 -29.49 16
5 H 0.06 3.38 7.10 -2.91 -0.02 3.36 16
6 C 0.00 0.03 5.46 84.66 0.46 0.49 16
7 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16
8 Si 0.96 44.90 29.54 68.60 2.03 46.92 16
9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16
11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16
12 C 0.03 0.83 4.63 86.31 0.40 1.23 16
13 C 0.11 3.07 3.23 30.59 0.10 3.17 16
14 H 0.06 2.48 6.55 -2.38 -0.02 2.47 16
15 O -0.56 -17.04 13.18 -148.98 -1.96 -19.00 16
16 C 0.09 1.76 6.23 86.38 0.54 2.30 16
17 N -0.12 -3.18 3.94 -187.54 -0.74 -3.92 16
18 N -0.05 -1.58 13.23 37.02 0.49 -1.09 16
19 N -0.30 -9.09 12.23 -52.19 -0.64 -9.73 16
20 C 0.20 5.78 7.93 137.37 1.09 6.87 16
21 C -0.04 -0.96 5.88 -20.04 -0.12 -1.07 16
22 C -0.06 -1.25 9.70 22.47 0.22 -1.03 16
23 C -0.15 -2.75 10.01 22.28 0.22 -2.53 16
24 C 0.11 1.95 7.30 22.42 0.16 2.11 16
25 F -0.14 -2.61 17.26 44.97 0.78 -1.83 16
26 C -0.15 -2.39 10.01 22.28 0.22 -2.16 16
27 C -0.05 -0.98 9.70 22.47 0.22 -0.76 16
28 N -0.31 -9.38 11.85 -52.14 -0.62 -10.00 16
29 H 0.01 0.43 8.13 -2.38 -0.02 0.41 16
30 H 0.05 1.98 6.90 -2.39 -0.02 1.96 16
31 H 0.09 2.24 7.97 -2.39 -0.02 2.22 16
32 H -0.04 -1.96 8.11 -2.39 -0.02 -1.98 16
33 H 0.00 0.03 6.38 -2.39 -0.02 0.02 16
34 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16
35 H 0.05 1.20 8.05 -2.39 -0.02 1.18 16
36 H 0.12 2.08 7.88 -2.39 -0.02 2.06 16
37 H 0.39 7.73 9.05 -74.06 -0.67 7.06 16
38 H 0.15 2.14 8.14 -2.38 -0.02 2.12 16
39 H 0.17 1.64 8.14 -2.38 -0.02 1.62 16
40 H 0.14 3.05 7.88 -2.91 -0.02 3.03 16
41 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16
42 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16
43 H 0.15 2.70 7.88 -2.92 -0.02 2.68 16
Total: -1.00 -77.17 375.55 1.05 -76.11
By element:
Atomic # 1 Polarization: 11.08 SS G_CDS: 0.39 Total: 11.46 kcal
Atomic # 6 Polarization: -12.38 SS G_CDS: 5.32 Total: -7.06 kcal
Atomic # 7 Polarization: -101.11 SS G_CDS: -5.49 Total: -106.60 kcal
Atomic # 8 Polarization: -17.04 SS G_CDS: -1.96 Total: -19.00 kcal
Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.83 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal
Total: -77.17 1.05 -76.11 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001649835015.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.076 kcal
(2) G-P(sol) polarization free energy of solvation -77.166 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.112 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds