Wall clock time and date at job start Tue Mar 31 2020 18:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46899 * 111.00305 * 2 1 4 4 C 1.52999 * 109.47199 * 66.04443 * 3 2 1 5 5 N 1.46501 * 109.47133 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99982 * 180.02562 * 5 4 3 7 7 O 1.21610 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.47372 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.47022 * 127.19639 * 0.15361 * 8 6 5 10 10 C 1.34178 * 105.95398 * 180.26341 * 9 8 6 11 11 O 1.34212 * 109.12405 * 359.75797 * 10 9 8 12 12 C 1.33650 * 110.91128 * 0.02562 * 11 10 9 13 13 C 1.50706 * 125.80370 * 179.97438 * 12 11 10 14 14 C 1.53000 * 117.49681 * 300.02488 * 13 12 11 15 15 C 1.53002 * 60.02940 * 107.47810 * 14 13 12 16 16 C 1.46905 * 110.99921 * 236.04435 * 2 1 3 17 17 C 1.50704 * 109.47287 * 293.95282 * 16 2 1 18 18 O 1.21294 * 119.99790 * 0.02562 * 17 16 2 19 19 N 1.34771 * 120.00096 * 179.97438 * 17 16 2 20 20 C 1.37092 * 120.00119 * 180.02562 * 19 17 16 21 21 H 1.08006 * 120.00147 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00201 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00359 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47092 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47113 * 120.00291 * 24 22 20 27 27 H 1.48503 * 109.47019 * 240.00332 * 24 22 20 28 28 H 1.09003 * 109.47392 * 59.99865 * 1 2 3 29 29 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47139 * 300.00210 * 1 2 3 31 31 H 1.09004 * 109.46948 * 306.04216 * 3 2 1 32 32 H 1.08998 * 109.47058 * 186.05136 * 3 2 1 33 33 H 1.08997 * 109.46749 * 60.00173 * 4 3 2 34 34 H 1.08996 * 109.47223 * 300.00559 * 4 3 2 35 35 H 0.96997 * 120.00034 * 359.97438 * 5 4 3 36 36 H 1.08000 * 127.02192 * 0.05342 * 9 8 6 37 37 H 1.08005 * 125.43705 * 179.79467 * 10 9 8 38 38 H 1.08999 * 115.56047 * 154.33935 * 13 12 11 39 39 H 1.09002 * 117.49833 * 214.97915 * 14 13 12 40 40 H 1.09002 * 117.49953 * 359.97438 * 14 13 12 41 41 H 1.09000 * 117.49996 * 107.50493 * 15 14 13 42 42 H 1.08999 * 117.49664 * 252.51862 * 15 14 13 43 43 H 1.08995 * 109.47364 * 53.95456 * 16 2 1 44 44 H 1.09005 * 109.47158 * 173.95474 * 16 2 1 45 45 H 0.96999 * 119.99782 * 0.02562 * 19 17 16 46 46 H 0.96991 * 120.00542 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1560 3.4253 1.3180 6 6 1.9555 4.2242 2.3848 7 8 1.3387 3.8096 3.3474 8 6 2.4837 5.6000 2.3847 9 6 3.2431 6.2604 1.3129 10 6 3.5134 7.4963 1.7601 11 8 2.9892 7.6445 2.9867 12 6 2.3681 6.5277 3.3782 13 6 1.6648 6.3255 4.6957 14 6 2.4972 6.4741 5.9708 15 6 1.4789 7.5517 5.5929 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2205 -0.9728 18 8 1.0046 -2.5832 -0.0034 19 7 2.0179 -3.1181 -1.9032 20 6 1.6914 -4.4411 -1.7536 21 1 1.1283 -4.7641 -0.8903 22 6 2.0847 -5.3665 -2.7125 23 7 2.7701 -4.9737 -3.7626 24 14 1.6390 -7.1692 -2.5089 25 1 0.8700 -7.3501 -1.2515 26 1 0.8122 -7.6080 -3.6618 27 1 2.8802 -7.9826 -2.4519 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3443 -0.1083 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0845 1.4265 35 1 2.6483 3.7558 0.5503 36 1 3.5283 5.8362 0.3616 37 1 4.0643 8.2515 1.2191 38 1 0.8729 5.5766 4.6960 39 1 2.2528 5.8230 6.8101 40 1 3.5535 6.7177 5.8568 41 1 0.5646 7.6095 6.1835 42 1 1.8652 8.5041 5.2299 43 1 1.5611 -0.3874 -2.0628 44 1 3.0797 -0.6612 -1.1757 45 1 2.5232 -2.8279 -2.6787 46 1 3.0443 -5.6197 -4.4321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663258713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:03 Heat of formation + Delta-G solvation = -20.082910 kcal Electronic energy + Delta-G solvation = -27440.868179 eV Core-core repulsion = 23333.543585 eV Total energy + Delta-G solvation = -4107.324594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.98849 -39.60561 -38.62261 -37.48488 -36.75916 -34.64092 -33.81795 -33.23664 -31.25079 -30.15947 -29.47382 -27.70006 -25.58164 -24.49619 -23.42235 -23.11181 -22.74127 -21.29618 -20.92297 -19.90558 -19.16572 -18.23981 -17.84862 -16.68195 -16.47321 -16.22007 -16.00793 -15.77460 -15.64033 -15.15961 -14.88475 -14.59868 -14.46996 -13.96424 -13.92983 -13.50870 -13.45256 -13.16477 -13.00506 -12.91888 -12.45078 -12.12827 -11.97611 -11.84304 -11.52415 -11.41372 -11.32698 -11.27427 -11.04566 -10.95035 -10.87961 -10.33701 -10.22456 -10.18845 -10.13014 -9.48695 -9.21240 -8.82046 -8.47720 -7.98749 -7.88724 -6.41738 -3.82375 0.98101 1.66701 2.34107 2.96237 3.10891 3.16635 3.27367 3.34838 3.49453 3.90257 3.93600 4.06070 4.27240 4.29285 4.46961 4.51197 4.54180 4.80082 4.87724 4.99084 5.02721 5.12995 5.21719 5.24754 5.32482 5.37773 5.40169 5.61432 5.63990 5.68076 5.69358 5.71483 5.85108 5.88069 5.91023 5.93710 6.01969 6.25804 6.29281 6.56397 6.63188 7.19738 7.31195 7.35963 7.55809 8.06818 8.06991 8.61964 9.18577 9.54503 10.06386 10.76114 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030485 B = 0.001637 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.277444 B =17099.024636 C =17670.148538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.123 3.877 5 N -0.722 5.722 6 C 0.590 3.410 7 O -0.538 6.538 8 C -0.238 4.238 9 C -0.188 4.188 10 C -0.038 4.038 11 O -0.175 6.175 12 C 0.109 3.891 13 C -0.090 4.090 14 C -0.158 4.158 15 C -0.171 4.171 16 C 0.047 3.953 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.015 0.985 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.158 0.842 37 H 0.209 0.791 38 H 0.153 0.847 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.470 28.315 8.912 29.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C 0.000 4.000 5 N -0.373 5.373 6 C 0.378 3.622 7 O -0.416 6.416 8 C -0.242 4.242 9 C -0.207 4.207 10 C -0.103 4.103 11 O -0.071 6.071 12 C 0.056 3.944 13 C -0.108 4.108 14 C -0.195 4.195 15 C -0.208 4.208 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.034 0.966 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.176 0.824 37 H 0.226 0.774 38 H 0.171 0.829 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.843 27.644 10.684 29.694 hybrid contribution 0.350 -0.276 -2.120 2.167 sum 2.193 27.368 8.564 28.760 Atomic orbital electron populations 1.22631 0.86460 1.04754 0.99138 1.61438 1.08964 1.10411 1.43080 1.22251 1.00756 0.89786 0.95656 1.21350 0.99650 0.80338 0.98705 1.45701 1.57942 1.14280 1.19386 1.17111 0.79138 0.83508 0.82468 1.90773 1.41504 1.75185 1.34174 1.21089 1.10114 0.96245 0.96754 1.22879 1.02782 0.94713 1.00350 1.23869 1.02823 0.99446 0.84179 1.83724 1.55657 1.36443 1.31320 1.21709 0.94162 0.83256 0.95226 1.20864 1.02635 1.03199 0.84085 1.23065 0.97537 1.02066 0.96847 1.23088 1.01781 0.93554 1.02355 1.21871 1.00681 0.94236 0.91644 1.19707 0.85510 0.86598 0.85267 1.90496 1.43794 1.80095 1.31586 1.41864 1.49472 1.07387 1.21422 1.19756 1.32785 0.82260 1.07925 0.87821 1.25257 0.96832 1.00572 0.95315 1.69614 1.38150 1.35668 1.10957 0.85802 0.78206 0.81929 0.78424 1.19203 1.20805 1.20759 0.96628 0.88359 0.91819 0.94568 0.90276 0.90094 0.91040 0.76744 0.82406 0.77433 0.82934 0.87371 0.88420 0.87618 0.88128 0.93349 0.89319 0.77516 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.96 60.06 0.54 0.83 16 2 N -0.51 -8.45 4.50 -244.37 -1.10 -9.55 16 3 C 0.04 0.54 5.07 -3.83 -0.02 0.52 16 4 C 0.12 1.52 5.60 -4.04 -0.02 1.49 16 5 N -0.72 -7.57 5.55 -61.40 -0.34 -7.91 16 6 C 0.59 7.39 7.81 -12.54 -0.10 7.29 16 7 O -0.54 -8.39 14.93 5.27 0.08 -8.31 16 8 C -0.24 -2.51 6.31 -103.28 -0.65 -3.16 16 9 C -0.19 -1.38 10.60 -37.45 -0.40 -1.78 16 10 C -0.04 -0.24 12.03 29.30 0.35 0.11 16 11 O -0.18 -1.53 10.23 7.67 0.08 -1.45 16 12 C 0.11 1.11 6.86 -34.96 -0.24 0.87 16 13 C -0.09 -0.84 5.62 -91.73 -0.52 -1.35 16 14 C -0.16 -1.17 10.23 -26.73 -0.27 -1.44 16 15 C -0.17 -1.15 10.17 -26.69 -0.27 -1.42 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.39 7.48 -10.99 -0.08 10.31 16 18 O -0.58 -15.46 13.91 5.54 0.08 -15.38 16 19 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.27 9.68 -14.94 -0.14 -8.42 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 30 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 31 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.08 0.86 7.93 -51.93 -0.41 0.44 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 35 H 0.40 3.03 7.64 -40.82 -0.31 2.72 16 36 H 0.16 0.74 7.74 -52.49 -0.41 0.33 16 37 H 0.21 0.47 8.06 -52.48 -0.42 0.05 16 38 H 0.15 1.63 6.68 -51.93 -0.35 1.28 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.64 7.96 -51.93 -0.41 0.23 16 43 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 45 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 46 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -34.15 388.80 -8.15 -42.30 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.49 Total: 11.29 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.95 Total: 5.13 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.77 Total: -55.43 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.23 Total: -25.15 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.15 -8.15 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.214 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds