Wall clock time and date at job start Tue Mar 31 2020 18:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46899 * 111.00305 * 2 1 4 4 C 1.52999 * 109.47199 * 66.04443 * 3 2 1 5 5 N 1.46501 * 109.47133 * 180.02562 * 4 3 2 6 6 C 1.34776 * 119.99982 * 180.02562 * 5 4 3 7 7 O 1.21610 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.47372 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.47022 * 127.19639 * 0.15361 * 8 6 5 10 10 C 1.34178 * 105.95398 * 180.26341 * 9 8 6 11 11 O 1.34212 * 109.12405 * 359.75797 * 10 9 8 12 12 C 1.33650 * 110.91128 * 0.02562 * 11 10 9 13 13 C 1.50706 * 125.80370 * 179.97438 * 12 11 10 14 14 C 1.53000 * 117.49681 * 300.02488 * 13 12 11 15 15 C 1.53002 * 60.02940 * 107.47810 * 14 13 12 16 16 C 1.46905 * 110.99921 * 236.04435 * 2 1 3 17 17 C 1.50704 * 109.47287 * 293.95282 * 16 2 1 18 18 O 1.21294 * 119.99790 * 0.02562 * 17 16 2 19 19 N 1.34771 * 120.00096 * 179.97438 * 17 16 2 20 20 C 1.37092 * 120.00119 * 180.02562 * 19 17 16 21 21 H 1.08006 * 120.00147 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00201 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00359 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00025 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47092 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47113 * 120.00291 * 24 22 20 27 27 H 1.48503 * 109.47019 * 240.00332 * 24 22 20 28 28 H 1.09003 * 109.47392 * 59.99865 * 1 2 3 29 29 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47139 * 300.00210 * 1 2 3 31 31 H 1.09004 * 109.46948 * 306.04216 * 3 2 1 32 32 H 1.08998 * 109.47058 * 186.05136 * 3 2 1 33 33 H 1.08997 * 109.46749 * 60.00173 * 4 3 2 34 34 H 1.08996 * 109.47223 * 300.00559 * 4 3 2 35 35 H 0.96997 * 120.00034 * 359.97438 * 5 4 3 36 36 H 1.08000 * 127.02192 * 0.05342 * 9 8 6 37 37 H 1.08005 * 125.43705 * 179.79467 * 10 9 8 38 38 H 1.08999 * 115.56047 * 154.33935 * 13 12 11 39 39 H 1.09002 * 117.49833 * 214.97915 * 14 13 12 40 40 H 1.09002 * 117.49953 * 359.97438 * 14 13 12 41 41 H 1.09000 * 117.49996 * 107.50493 * 15 14 13 42 42 H 1.08999 * 117.49664 * 252.51862 * 15 14 13 43 43 H 1.08995 * 109.47364 * 53.95456 * 16 2 1 44 44 H 1.09005 * 109.47158 * 173.95474 * 16 2 1 45 45 H 0.96999 * 119.99782 * 0.02562 * 19 17 16 46 46 H 0.96991 * 120.00542 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1560 3.4253 1.3180 6 6 1.9555 4.2242 2.3848 7 8 1.3387 3.8096 3.3474 8 6 2.4837 5.6000 2.3847 9 6 3.2431 6.2604 1.3129 10 6 3.5134 7.4963 1.7601 11 8 2.9892 7.6445 2.9867 12 6 2.3681 6.5277 3.3782 13 6 1.6648 6.3255 4.6957 14 6 2.4972 6.4741 5.9708 15 6 1.4789 7.5517 5.5929 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2205 -0.9728 18 8 1.0046 -2.5832 -0.0034 19 7 2.0179 -3.1181 -1.9032 20 6 1.6914 -4.4411 -1.7536 21 1 1.1283 -4.7641 -0.8903 22 6 2.0847 -5.3665 -2.7125 23 7 2.7701 -4.9737 -3.7626 24 14 1.6390 -7.1692 -2.5089 25 1 0.8700 -7.3501 -1.2515 26 1 0.8122 -7.6080 -3.6618 27 1 2.8802 -7.9826 -2.4519 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3443 -0.1083 33 1 2.0658 1.5015 2.1491 34 1 0.5472 2.0845 1.4265 35 1 2.6483 3.7558 0.5503 36 1 3.5283 5.8362 0.3616 37 1 4.0643 8.2515 1.2191 38 1 0.8729 5.5766 4.6960 39 1 2.2528 5.8230 6.8101 40 1 3.5535 6.7177 5.8568 41 1 0.5646 7.6095 6.1835 42 1 1.8652 8.5041 5.2299 43 1 1.5611 -0.3874 -2.0628 44 1 3.0797 -0.6612 -1.1757 45 1 2.5232 -2.8279 -2.6787 46 1 3.0443 -5.6197 -4.4321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663258713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:02 Heat of formation + Delta-G solvation = -45.581575 kcal Electronic energy + Delta-G solvation = -27441.973884 eV Core-core repulsion = 23333.543585 eV Total energy + Delta-G solvation = -4108.430300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.60469 -40.64414 -40.25878 -38.23483 -38.00290 -36.01535 -35.51193 -33.92529 -33.26700 -30.87357 -30.51268 -29.09497 -27.09628 -25.89198 -24.36568 -23.80804 -23.32933 -22.39810 -21.68465 -20.97114 -20.67315 -19.84769 -18.93537 -17.78801 -17.37970 -17.27692 -17.04505 -16.82583 -16.56665 -16.32546 -16.22125 -16.01415 -15.61260 -15.42807 -15.05840 -14.98675 -14.52744 -14.34027 -13.95515 -13.77957 -13.50894 -13.44905 -13.11903 -13.02972 -12.91685 -12.58605 -12.54837 -12.49475 -12.38824 -12.16219 -12.09466 -11.94578 -11.51868 -11.45708 -11.08959 -10.83855 -10.28530 -10.15530 -9.98329 -9.44635 -9.24302 -8.45621 -5.93725 0.23925 1.12449 1.36928 1.42301 1.56141 1.71311 2.06213 2.07463 2.25727 2.31315 2.86858 2.92253 3.21521 3.37484 3.43198 3.68705 3.74955 3.85777 3.94265 3.98414 4.05946 4.22574 4.25817 4.36345 4.45622 4.52252 4.53545 4.63057 4.63883 4.68188 4.73929 4.83544 4.86561 4.94350 5.01236 5.06588 5.15200 5.20899 5.31937 5.41003 5.42857 5.85417 6.01497 6.05228 6.16297 6.51758 6.62750 7.15119 7.18142 7.58664 8.15178 8.71958 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030485 B = 0.001637 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.277444 B =17099.024636 C =17670.148538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.054 3.946 4 C 0.132 3.868 5 N -0.706 5.706 6 C 0.584 3.416 7 O -0.580 6.580 8 C -0.263 4.263 9 C -0.194 4.194 10 C -0.029 4.029 11 O -0.180 6.180 12 C 0.098 3.902 13 C -0.117 4.117 14 C -0.156 4.156 15 C -0.152 4.152 16 C 0.060 3.940 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.416 0.584 36 H 0.186 0.814 37 H 0.252 0.748 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 30.440 7.533 31.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.074 4.074 4 C 0.008 3.992 5 N -0.359 5.359 6 C 0.373 3.627 7 O -0.461 6.461 8 C -0.268 4.268 9 C -0.213 4.213 10 C -0.093 4.093 11 O -0.076 6.076 12 C 0.044 3.956 13 C -0.135 4.135 14 C -0.193 4.193 15 C -0.188 4.188 16 C -0.071 4.071 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.253 0.747 36 H 0.203 0.797 37 H 0.268 0.732 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.126 0.874 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.253 29.807 9.258 31.381 hybrid contribution -0.077 -0.852 -1.657 1.865 sum 3.176 28.955 7.601 30.104 Atomic orbital electron populations 1.22468 0.86879 1.02418 1.00600 1.61320 1.08914 1.13080 1.43086 1.22235 1.01886 0.87409 0.95902 1.21109 0.98776 0.81065 0.98300 1.45495 1.57516 1.13260 1.19589 1.17509 0.78571 0.84437 0.82145 1.90749 1.43446 1.76176 1.35761 1.21147 1.11599 0.95410 0.98638 1.23194 1.02486 0.94880 1.00706 1.24760 1.01481 1.00072 0.83022 1.83736 1.55599 1.35777 1.32502 1.21830 0.94494 0.83751 0.95485 1.20786 1.03198 1.04510 0.84957 1.23139 0.97770 1.02452 0.95931 1.23170 1.01989 0.92892 1.00795 1.21742 1.02372 0.89900 0.93045 1.20830 0.83704 0.88907 0.83851 1.90479 1.45149 1.81492 1.33076 1.41920 1.50115 1.06993 1.22174 1.19677 1.34267 0.84147 1.08010 0.90474 1.25993 0.96317 1.04171 0.94723 1.69664 1.38168 1.37051 1.11219 0.84897 0.78233 0.77163 0.78194 1.19993 1.19602 1.19635 0.94611 0.92479 0.90907 0.91991 0.88274 0.92525 0.92279 0.74732 0.79697 0.73238 0.85188 0.86825 0.88147 0.86264 0.87413 0.90862 0.86683 0.76937 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 8.96 127.69 1.14 1.93 16 2 N -0.54 -17.00 4.50 -927.04 -4.17 -21.17 16 3 C 0.05 1.15 5.07 86.30 0.44 1.59 16 4 C 0.13 3.16 5.60 86.38 0.48 3.64 16 5 N -0.71 -13.99 5.55 -466.43 -2.59 -16.58 16 6 C 0.58 14.75 7.81 86.65 0.68 15.43 16 7 O -0.58 -19.07 14.93 -4.06 -0.06 -19.13 16 8 C -0.26 -5.40 6.31 -18.99 -0.12 -5.52 16 9 C -0.19 -2.35 10.60 23.65 0.25 -2.10 16 10 C -0.03 -0.28 12.03 66.89 0.80 0.53 16 11 O -0.18 -2.84 10.23 4.52 0.05 -2.79 16 12 C 0.10 1.96 6.86 25.26 0.17 2.13 16 13 C -0.12 -2.24 5.62 -11.51 -0.06 -2.30 16 14 C -0.16 -2.29 10.23 30.60 0.31 -1.98 16 15 C -0.15 -1.93 10.17 30.62 0.31 -1.62 16 16 C 0.06 2.00 5.45 85.56 0.47 2.47 16 17 C 0.44 20.79 7.48 87.66 0.66 21.44 16 18 O -0.62 -34.22 13.91 -3.07 -0.04 -34.27 16 19 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 20 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 23 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 24 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 2.33 5.82 -2.39 -0.01 2.32 16 30 H 0.07 2.16 6.47 -2.38 -0.02 2.15 16 31 H 0.06 1.08 8.12 -2.38 -0.02 1.06 16 32 H 0.10 1.78 7.93 -2.39 -0.02 1.76 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.57 6.55 -2.39 -0.02 1.55 16 35 H 0.42 5.24 7.64 -92.71 -0.71 4.53 16 36 H 0.19 1.03 7.74 -2.91 -0.02 1.01 16 37 H 0.25 -0.03 8.06 -2.91 -0.02 -0.06 16 38 H 0.13 3.06 6.68 -2.39 -0.02 3.04 16 39 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.11 1.22 7.96 -2.39 -0.02 1.20 16 43 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 44 H 0.12 3.24 7.93 -2.38 -0.02 3.22 16 45 H 0.40 19.01 7.90 -92.71 -0.73 18.27 16 46 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -77.71 388.80 0.27 -77.44 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.41 Total: 33.89 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.81 Total: 17.39 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -8.10 Total: -117.69 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -0.06 Total: -56.19 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -77.71 0.27 -77.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663258713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.854 kcal (2) G-P(sol) polarization free energy of solvation -77.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds