Wall clock time and date at job start Tue Mar 31 2020 19:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35526 * 117.00339 * 2 1 4 4 C 1.38829 * 120.88960 * 0.02562 * 3 2 1 5 5 C 1.38717 * 119.19659 * 179.97438 * 4 3 2 6 6 O 1.35513 * 119.46993 * 179.97438 * 5 4 3 7 7 N 1.32587 * 121.05323 * 0.02562 * 5 4 3 8 8 C 1.31617 * 121.98107 * 359.69792 * 7 5 4 9 9 C 1.39547 * 120.66609 * 0.58454 * 8 7 5 10 10 C 1.47334 * 120.55535 * 179.70340 * 9 8 7 11 11 O 1.21615 * 119.99889 * 179.72650 * 10 9 8 12 12 N 1.34772 * 120.00087 * 359.72715 * 10 9 8 13 13 C 1.46503 * 120.00026 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.01476 * 326.38406 * 13 12 10 15 15 C 1.54261 * 110.07663 * 87.80597 * 13 12 10 16 16 C 1.54888 * 104.19672 * 142.91518 * 15 13 12 17 17 C 1.54891 * 102.75120 * 322.06034 * 16 15 13 18 18 C 1.53876 * 110.03171 * 205.00037 * 13 12 10 19 19 H 1.08998 * 110.03319 * 121.37735 * 18 13 12 20 20 C 1.52999 * 110.03160 * 359.94772 * 18 13 12 21 21 N 1.46499 * 109.47113 * 175.00078 * 20 18 13 22 22 C 1.36943 * 120.00069 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99678 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99926 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99974 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99901 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46894 * 90.00100 * 26 24 22 28 28 H 1.48497 * 109.46998 * 210.00301 * 26 24 22 29 29 H 1.48507 * 109.46928 * 330.00030 * 26 24 22 30 30 H 1.09004 * 109.47472 * 299.99959 * 1 2 3 31 31 H 1.09002 * 109.47342 * 59.99610 * 1 2 3 32 32 H 1.08999 * 109.47335 * 179.97438 * 1 2 3 33 33 H 1.08000 * 120.39940 * 0.02562 * 4 3 2 34 34 H 0.96707 * 114.00194 * 90.00284 * 6 5 4 35 35 H 1.07988 * 119.66815 * 180.29471 * 8 7 5 36 36 H 0.96995 * 120.00233 * 359.97438 * 12 10 9 37 37 H 1.09000 * 110.48928 * 261.59527 * 15 13 12 38 38 H 1.09001 * 110.48691 * 24.10554 * 15 13 12 39 39 H 1.09005 * 110.75648 * 80.37263 * 16 15 13 40 40 H 1.09004 * 110.75897 * 203.55715 * 16 15 13 41 41 H 1.09004 * 110.48613 * 279.26383 * 17 16 15 42 42 H 1.08994 * 110.48745 * 156.61801 * 17 16 15 43 43 H 1.08998 * 109.47264 * 295.00259 * 20 18 13 44 44 H 1.08998 * 109.47519 * 55.00258 * 20 18 13 45 45 H 0.96997 * 120.00069 * 0.02562 * 21 20 18 46 46 H 0.97006 * 120.00042 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3064 2.3835 0.0005 5 6 1.9725 3.6003 0.0011 6 8 1.2577 4.7516 0.0010 7 7 3.2972 3.6548 0.0005 8 6 4.0396 2.5680 0.0054 9 6 3.4500 1.3032 -0.0009 10 6 4.2835 0.0883 -0.0020 11 8 3.7590 -1.0089 -0.0025 12 7 5.6271 0.1928 -0.0024 13 6 6.4559 -1.0153 -0.0041 14 1 5.9639 -1.8060 0.5623 15 6 6.7091 -1.4817 -1.4525 16 6 8.1671 -2.0041 -1.4340 17 6 8.8778 -1.0006 -0.4921 18 6 7.8348 -0.7094 0.6066 19 1 8.0118 -1.3517 1.4693 20 6 7.9090 0.7609 1.0232 21 7 9.1787 1.0104 1.7099 22 6 9.4700 2.2646 2.1763 23 1 8.7634 3.0697 2.0383 24 6 10.6730 2.5009 2.8275 25 7 11.5338 1.5196 2.9961 26 14 11.0700 4.2115 3.4644 27 1 10.5746 4.3483 4.8575 28 1 12.5400 4.4203 3.4389 29 1 10.4110 5.2258 2.6028 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2269 2.3513 0.0014 34 1 1.0499 5.0856 0.8845 35 1 5.1159 2.6559 0.0096 36 1 6.0455 1.0679 -0.0024 37 1 6.0203 -2.2827 -1.7213 38 1 6.6099 -0.6461 -2.1453 39 1 8.2105 -3.0140 -1.0260 40 1 8.6011 -1.9738 -2.4335 41 1 9.1311 -0.0867 -1.0294 42 1 9.7716 -1.4504 -0.0599 43 1 7.8445 1.3932 0.1376 44 1 7.0816 0.9906 1.6946 45 1 9.8135 0.2875 1.8336 46 1 12.3746 1.6848 3.4509 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667751834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:05 Heat of formation + Delta-G solvation = -59.409943 kcal Electronic energy + Delta-G solvation = -29217.810529 eV Core-core repulsion = 25108.780587 eV Total energy + Delta-G solvation = -4109.029943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32992 -39.81099 -39.03979 -37.88695 -37.01794 -34.36147 -33.62834 -31.92102 -31.40769 -30.98501 -28.56732 -28.10176 -27.23870 -24.65353 -24.36984 -23.28142 -22.47343 -21.14799 -20.43601 -19.63869 -19.03081 -18.20491 -17.73203 -17.22501 -16.94163 -16.31678 -15.80703 -15.55918 -15.29897 -15.03641 -14.84637 -14.74035 -14.47772 -14.20964 -13.68475 -13.51744 -13.32182 -13.00543 -12.95180 -12.88151 -12.30360 -12.15338 -11.94659 -11.86646 -11.61094 -11.29625 -10.86553 -10.82366 -10.78109 -10.47121 -10.37631 -10.29348 -10.21492 -9.95426 -9.70457 -9.58140 -9.49634 -9.21783 -8.93321 -8.79565 -6.94289 -5.77769 -3.06707 0.27504 0.89851 2.66975 2.72251 3.15851 3.24013 3.43506 3.49000 3.50303 3.58129 4.16283 4.35084 4.48296 4.57007 4.68600 4.74295 4.75103 4.85795 4.93644 5.05724 5.07607 5.14421 5.21062 5.39626 5.48255 5.54447 5.67242 5.69411 5.78474 5.88192 5.91753 5.95196 6.08417 6.19636 6.22977 6.32115 6.45880 6.59834 6.62065 6.73151 6.76504 6.82946 7.06494 7.53250 7.59727 7.68159 8.29969 8.40745 9.52439 10.09512 10.44107 11.44916 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009954 B = 0.003439 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.187269 B = 8139.852618 C =10439.709976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.270 6.270 3 C 0.237 3.763 4 C -0.291 4.291 5 C 0.369 3.631 6 O -0.480 6.480 7 N -0.525 5.525 8 C 0.201 3.799 9 C -0.232 4.232 10 C 0.566 3.434 11 O -0.525 6.525 12 N -0.717 5.717 13 C 0.151 3.849 14 H 0.091 0.909 15 C -0.132 4.132 16 C -0.124 4.124 17 C -0.111 4.111 18 C -0.108 4.108 19 H 0.083 0.917 20 C 0.156 3.844 21 N -0.728 5.728 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.151 0.849 34 H 0.407 0.593 35 H 0.174 0.826 36 H 0.404 0.596 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.017 0.983 44 H 0.021 0.979 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.741 -2.721 -8.152 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.178 6.178 3 C 0.181 3.819 4 C -0.314 4.314 5 C 0.191 3.809 6 O -0.289 6.289 7 N -0.247 5.247 8 C 0.042 3.958 9 C -0.239 4.239 10 C 0.352 3.648 11 O -0.402 6.402 12 N -0.372 5.372 13 C 0.046 3.954 14 H 0.109 0.891 15 C -0.170 4.170 16 C -0.162 4.162 17 C -0.149 4.149 18 C -0.127 4.127 19 H 0.101 0.899 20 C 0.028 3.972 21 N -0.372 5.372 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.169 0.831 34 H 0.266 0.734 35 H 0.191 0.809 36 H 0.243 0.757 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.716 -2.782 -8.705 23.561 hybrid contribution -0.061 0.735 0.974 1.222 sum -21.777 -2.047 -7.731 23.199 Atomic orbital electron populations 1.23275 0.78006 1.04875 1.01596 1.86393 1.21353 1.24555 1.85455 1.19123 0.90813 0.84854 0.87126 1.22085 1.02178 0.91644 1.15446 1.19016 0.86623 0.85004 0.90208 1.84690 1.71181 1.38704 1.34297 1.67238 1.06380 1.33237 1.17869 1.22771 1.00042 0.84869 0.88107 1.20560 0.91452 0.96150 1.15708 1.17621 0.82232 0.87999 0.76952 1.90808 1.72877 1.27193 1.49291 1.46293 1.05305 1.10797 1.74788 1.21658 0.90519 0.86766 0.96433 0.89135 1.22764 0.96967 1.00880 0.96432 1.22487 0.94860 0.99101 0.99790 1.22358 0.97624 0.99198 0.95726 1.22226 0.92745 0.99111 0.98657 0.89882 1.20704 0.90445 0.91499 0.94568 1.42316 1.16799 1.10090 1.67995 1.19216 1.00884 0.87494 1.29668 0.91165 1.24732 0.97037 0.97525 1.01533 1.69657 1.09877 1.30668 1.47835 0.86210 0.77271 0.84013 0.78826 1.21748 1.21798 1.20674 0.92186 0.92183 0.87422 0.83146 0.73380 0.80947 0.75686 0.91491 0.91305 0.91587 0.91654 0.90964 0.91183 0.96526 0.96100 0.78131 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.84 101.05 0.99 1.11 16 2 O -0.27 -3.23 8.71 -39.57 -0.34 -3.58 16 3 C 0.24 2.83 6.74 -38.36 -0.26 2.57 16 4 C -0.29 -2.81 9.02 -39.19 -0.35 -3.17 16 5 C 0.37 3.99 7.73 -17.05 -0.13 3.86 16 6 O -0.48 -4.20 13.54 -18.23 -0.25 -4.45 16 7 N -0.53 -6.68 10.36 -13.04 -0.14 -6.82 16 8 C 0.20 2.44 10.71 -17.16 -0.18 2.26 16 9 C -0.23 -3.02 5.90 -104.70 -0.62 -3.64 16 10 C 0.57 8.36 7.76 -12.56 -0.10 8.26 16 11 O -0.52 -9.20 14.93 -16.03 -0.24 -9.43 16 12 N -0.72 -9.80 4.34 -53.82 -0.23 -10.03 16 13 C 0.15 2.12 3.22 -66.81 -0.22 1.90 16 14 H 0.09 1.35 7.56 -51.93 -0.39 0.96 16 15 C -0.13 -1.66 6.53 -25.08 -0.16 -1.82 16 16 C -0.12 -1.50 6.91 -24.74 -0.17 -1.67 16 17 C -0.11 -1.64 6.08 -25.07 -0.15 -1.79 16 18 C -0.11 -1.68 2.96 -89.50 -0.27 -1.95 16 19 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 20 C 0.16 2.90 4.19 -4.04 -0.02 2.89 16 21 N -0.73 -17.65 5.45 -59.91 -0.33 -17.97 16 22 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 26 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 31 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 32 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.15 1.01 6.45 -52.49 -0.34 0.67 16 34 H 0.41 1.47 9.06 45.56 0.41 1.89 16 35 H 0.17 1.83 6.41 -52.49 -0.34 1.49 16 36 H 0.40 5.18 3.95 -40.82 -0.16 5.02 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.14 7.76 -51.93 -0.40 0.74 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.31 7.11 -51.93 -0.37 -0.06 16 44 H 0.02 0.40 7.42 -51.93 -0.39 0.02 16 45 H 0.38 9.90 7.55 -40.82 -0.31 9.59 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -35.21 376.07 -7.62 -42.83 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.58 Total: 12.05 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.88 Total: 1.66 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.03 Total: -61.86 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.83 Total: -17.46 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.21 -7.62 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667751834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.579 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds