Wall clock time and date at job start Tue Mar 31 2020 18:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99914 * 2 1 4 4 C 1.53000 * 109.46882 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47221 * 65.00365 * 4 3 2 6 6 C 1.35426 * 117.00387 * 179.97438 * 5 4 3 7 7 N 1.32232 * 119.79513 * 0.02562 * 6 5 4 8 8 C 1.31882 * 121.80058 * 180.02562 * 7 6 5 9 9 C 1.38358 * 121.18625 * 359.97438 * 8 7 6 10 10 C 1.38341 * 119.45164 * 0.27686 * 9 8 7 11 11 C 1.39990 * 118.35297 * 359.50838 * 10 9 8 12 12 C 1.47519 * 120.59914 * 180.26306 * 11 10 9 13 13 O 1.21584 * 120.00517 * 131.32707 * 12 11 10 14 14 N 1.34781 * 119.99908 * 311.32977 * 12 11 10 15 15 C 1.46505 * 119.99683 * 4.44818 * 14 12 11 16 16 C 1.46499 * 120.00169 * 184.44836 * 14 12 11 17 17 C 1.53948 * 113.74058 * 218.73818 * 16 14 12 18 18 N 1.47803 * 86.03609 * 222.08198 * 17 16 14 19 19 C 1.36942 * 134.45778 * 204.64208 * 18 17 16 20 20 H 1.08005 * 119.99912 * 179.86750 * 19 18 17 21 21 C 1.38815 * 119.99889 * 359.87501 * 19 18 17 22 22 N 1.31621 * 119.99739 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47416 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46994 * 119.99845 * 23 21 19 26 26 H 1.48504 * 109.46847 * 239.99455 * 23 21 19 27 27 C 1.47582 * 91.05390 * 24.55308 * 18 17 16 28 28 H 1.08998 * 109.47344 * 59.99547 * 1 2 3 29 29 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46860 * 299.99538 * 1 2 3 31 31 H 1.09001 * 109.46694 * 60.00633 * 3 2 1 32 32 H 1.08994 * 109.47227 * 300.00443 * 3 2 1 33 33 H 1.09000 * 109.47274 * 305.00246 * 4 3 2 34 34 H 1.09003 * 109.46842 * 185.00129 * 4 3 2 35 35 H 1.07999 * 119.41133 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.27368 * 179.97438 * 9 8 7 37 37 H 1.08000 * 120.81950 * 179.74419 * 10 9 8 38 38 H 1.09000 * 109.47261 * 93.01318 * 15 14 12 39 39 H 1.09001 * 109.46794 * 213.01183 * 15 14 12 40 40 H 1.08993 * 109.47072 * 333.00953 * 15 14 12 41 41 H 1.09003 * 112.94277 * 350.33037 * 16 14 12 42 42 H 1.08998 * 113.76978 * 336.35231 * 17 16 14 43 43 H 1.09009 * 113.76393 * 107.74588 * 17 16 14 44 44 H 0.97001 * 119.99166 * 180.02562 * 22 21 19 45 45 H 1.08995 * 113.76986 * 221.15313 * 27 18 17 46 46 H 1.08999 * 113.76986 * 89.74991 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.2973 0.3994 -1.3837 7 7 6.1320 0.7788 -0.4309 8 6 7.4364 0.6226 -0.5470 9 6 7.9916 0.0507 -1.6779 10 6 7.1649 -0.3598 -2.7084 11 6 5.7834 -0.1882 -2.5609 12 6 4.8560 -0.6136 -3.6263 13 8 3.8816 -1.2869 -3.3512 14 7 5.0887 -0.2559 -4.9048 15 6 6.3124 0.4716 -5.2507 16 6 4.1179 -0.5945 -5.9485 17 6 4.7627 -1.0194 -7.2803 18 7 3.7226 -0.1937 -7.9292 19 6 3.1304 -0.1932 -9.1639 20 1 2.3701 0.5374 -9.3978 21 6 3.5072 -1.1317 -10.1148 22 7 4.4340 -2.0217 -9.8298 23 14 2.6999 -1.1304 -11.7993 24 1 1.6974 -0.0371 -11.8670 25 1 3.7342 -0.9196 -12.8438 26 1 2.0259 -2.4342 -12.0261 27 6 3.5770 0.6280 -6.7120 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 8.0828 0.9461 0.2554 36 1 9.0619 -0.0698 -1.7577 37 1 7.5750 -0.8051 -3.6028 38 1 7.0845 -0.2375 -5.5494 39 1 6.1081 1.1549 -6.0750 40 1 6.6550 1.0385 -4.3852 41 1 3.3400 -1.2743 -5.6008 42 1 5.7750 -0.6399 -7.4191 43 1 4.6740 -2.0853 -7.4909 44 1 4.6975 -2.6773 -10.4944 45 1 2.5434 0.8751 -6.4698 46 1 4.2403 1.4925 -6.6836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671202496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:52 Heat of formation + Delta-G solvation = -29.894108 kcal Electronic energy + Delta-G solvation = -29243.940293 eV Core-core repulsion = 25136.190253 eV Total energy + Delta-G solvation = -4107.750040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06549 -40.83048 -39.46624 -39.04847 -38.35031 -36.02176 -34.23730 -33.33550 -32.40574 -30.79391 -29.56578 -28.00944 -27.29703 -26.65565 -26.11360 -25.01504 -24.26257 -23.19168 -21.74946 -20.21725 -19.52363 -18.88475 -18.39189 -18.13805 -17.88842 -17.39853 -16.98022 -16.80107 -16.52736 -16.23775 -16.10121 -15.87793 -15.63396 -15.38074 -14.65229 -14.53766 -14.42891 -14.25214 -13.81521 -13.63664 -13.40670 -13.31961 -13.30331 -13.21050 -13.05676 -12.83128 -12.59091 -12.56705 -12.41097 -12.11070 -11.94304 -11.92220 -11.57293 -11.24413 -10.90788 -10.88481 -10.72165 -10.53797 -9.65290 -9.47303 -8.98015 -7.93826 -5.28389 -0.19696 0.25838 1.45396 1.47353 1.57448 1.62173 1.93117 1.96284 2.47468 2.73454 2.78588 3.19380 3.25963 3.39295 3.58196 3.78645 3.82589 3.95211 3.99921 4.11253 4.19958 4.20976 4.29163 4.34533 4.37798 4.45154 4.47517 4.51170 4.56937 4.60853 4.69257 4.70347 4.81516 4.81583 4.88969 4.95412 5.13130 5.17221 5.21300 5.44794 5.46375 5.66239 5.87317 6.12880 6.24168 6.39470 6.76423 6.87717 7.11874 7.55522 8.48970 9.23402 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.003016 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.871043 B = 9280.095959 C =11057.177007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.058 3.942 4 C 0.070 3.930 5 O -0.311 6.311 6 C 0.346 3.654 7 N -0.554 5.554 8 C 0.160 3.840 9 C -0.199 4.199 10 C -0.009 4.009 11 C -0.224 4.224 12 C 0.563 3.437 13 O -0.575 6.575 14 N -0.593 5.593 15 C 0.071 3.929 16 C 0.115 3.885 17 C 0.165 3.835 18 N -0.635 5.635 19 C -0.237 4.237 20 H 0.086 0.914 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.983 3.017 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.293 1.293 27 C 0.116 3.884 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.206 0.794 36 H 0.187 0.813 37 H 0.164 0.836 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.250 0.750 45 H 0.047 0.953 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.766 10.207 23.628 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C -0.018 4.018 4 C -0.005 4.005 5 O -0.218 6.218 6 C 0.167 3.833 7 N -0.278 5.278 8 C 0.004 3.996 9 C -0.218 4.218 10 C -0.035 4.035 11 C -0.230 4.230 12 C 0.352 3.648 13 O -0.454 6.454 14 N -0.325 5.325 15 C -0.070 4.070 16 C 0.010 3.990 17 C 0.039 3.961 18 N -0.362 5.362 19 C -0.365 4.365 20 H 0.103 0.897 21 C -0.257 4.257 22 N -0.600 5.600 23 Si 0.811 3.189 24 H -0.190 1.190 25 H -0.215 1.215 26 H -0.220 1.220 27 C -0.010 4.010 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.222 0.778 36 H 0.204 0.796 37 H 0.182 0.818 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.676 9.931 24.018 26.834 hybrid contribution -0.517 -0.473 -1.831 1.961 sum 6.159 9.458 22.187 24.892 Atomic orbital electron populations 1.22896 0.79430 1.03561 1.00989 1.87958 1.21634 1.28655 1.95629 1.22809 0.91078 0.85276 1.02654 1.22921 0.93676 0.99234 0.84677 1.86394 1.18225 1.75858 1.41284 1.19856 0.84440 0.90037 0.88967 1.67519 1.06901 1.24178 1.29220 1.23447 0.88703 0.89861 0.97591 1.22376 1.03301 1.02427 0.93710 1.22036 0.89101 0.92171 1.00195 1.19825 0.95733 1.11949 0.95514 1.18452 0.84681 0.79042 0.82650 1.90773 1.31754 1.39988 1.82900 1.47871 1.22478 1.56044 1.06080 1.22184 0.85227 0.97003 1.02607 1.23324 0.92075 0.97789 0.85855 1.22513 0.91832 0.96131 0.85650 1.45995 1.43675 1.35487 1.11080 1.19422 1.15865 1.12955 0.88255 0.89667 1.25667 0.99914 0.97921 1.02236 1.70011 1.34250 1.20576 1.35123 0.84948 0.77588 0.77382 0.78993 1.18960 1.21486 1.21986 1.23044 0.98978 0.94261 0.84715 0.94030 0.89464 0.91552 0.87484 0.92726 0.90981 0.88036 0.77791 0.79576 0.81821 0.90451 0.90984 0.88742 0.89373 0.93869 0.94207 0.94074 0.93431 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.42 -11.62 10.67 -144.34 -1.54 -13.16 16 3 C 0.06 1.21 6.32 71.98 0.45 1.67 16 4 C 0.07 1.60 5.69 71.98 0.41 2.01 16 5 O -0.31 -10.08 9.14 -70.60 -0.65 -10.72 16 6 C 0.35 9.92 7.49 85.13 0.64 10.56 16 7 N -0.55 -12.07 9.21 -308.01 -2.84 -14.91 16 8 C 0.16 2.12 11.17 84.71 0.95 3.07 16 9 C -0.20 -2.29 10.09 22.32 0.23 -2.06 16 10 C -0.01 -0.17 7.73 22.72 0.18 0.00 16 11 C -0.22 -6.40 4.92 -19.91 -0.10 -6.49 16 12 C 0.56 20.95 6.98 86.69 0.60 21.55 16 13 O -0.57 -27.05 16.02 4.53 0.07 -26.97 16 14 N -0.59 -20.62 3.09 -832.11 -2.57 -23.20 16 15 C 0.07 1.77 7.66 127.77 0.98 2.75 16 16 C 0.11 4.92 4.41 46.75 0.21 5.13 16 17 C 0.16 8.05 7.00 86.44 0.60 8.66 16 18 N -0.64 -33.74 3.70 -716.74 -2.65 -36.40 16 19 C -0.24 -13.60 10.70 84.03 0.90 -12.70 16 20 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 22 N -0.95 -57.79 11.39 21.65 0.25 -57.55 16 23 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 C 0.12 5.02 8.47 86.49 0.73 5.75 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.10 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.19 0.59 8.06 -2.91 -0.02 0.56 16 37 H 0.16 2.46 6.61 -2.91 -0.02 2.44 16 38 H 0.08 1.65 7.54 -2.39 -0.02 1.64 16 39 H 0.07 1.90 6.48 -2.39 -0.02 1.88 16 40 H 0.09 1.84 5.66 -2.39 -0.01 1.83 16 41 H 0.09 4.30 7.20 -2.39 -0.02 4.29 16 42 H 0.04 2.00 6.87 -2.39 -0.02 1.98 16 43 H 0.04 2.23 7.17 -2.38 -0.02 2.21 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 2.34 6.81 -2.39 -0.02 2.32 16 Total: -1.00 -84.71 380.88 1.58 -83.13 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.99 Total: 13.11 kcal Atomic # 6 Polarization: 29.95 SS G_CDS: 8.49 Total: 38.44 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -7.82 Total: -132.05 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -2.11 Total: -50.86 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -84.71 1.58 -83.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671202496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.235 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds