Wall clock time and date at job start Tue Mar 31 2020 19:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35738 * 116.99910 * 2 1 4 4 C 1.39289 * 120.84831 * 0.20772 * 3 2 1 5 5 C 1.37950 * 119.09319 * 180.25114 * 4 3 2 6 6 N 1.31979 * 120.82341 * 359.78732 * 5 4 3 7 7 C 1.31942 * 121.86266 * 359.97438 * 6 5 4 8 8 C 1.37990 * 120.82747 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.45991 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.46600 * 264.99952 * 9 8 7 11 11 O 1.21277 * 120.00123 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99476 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99565 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.46647 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.71519 * 299.93521 * 14 13 12 16 16 C 1.52883 * 109.61462 * 179.63085 * 14 13 12 17 17 O 1.42961 * 109.29696 * 188.11162 * 16 14 13 18 18 C 1.42963 * 114.16256 * 62.45744 * 17 16 14 19 19 C 1.53300 * 109.22355 * 297.41197 * 18 17 16 20 20 N 1.47156 * 108.37967 * 52.30669 * 19 18 17 21 21 C 1.36936 * 120.98310 * 129.44445 * 20 19 18 22 22 H 1.08000 * 119.99948 * 210.91794 * 21 20 19 23 23 C 1.38812 * 119.99919 * 30.91755 * 21 20 19 24 24 N 1.31620 * 120.00186 * 11.39554 * 23 21 20 25 25 Si 1.86800 * 119.99928 * 191.39283 * 23 21 20 26 26 H 1.48497 * 109.47099 * 269.99916 * 25 23 21 27 27 H 1.48498 * 109.46951 * 30.00026 * 25 23 21 28 28 H 1.48505 * 109.47099 * 149.99863 * 25 23 21 29 29 H 1.08997 * 109.46839 * 299.99890 * 1 2 3 30 30 H 1.08995 * 109.46989 * 59.99870 * 1 2 3 31 31 H 1.09002 * 109.46994 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.44980 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.58517 * 179.76987 * 5 4 3 34 34 H 1.08003 * 119.59103 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47361 * 145.00205 * 9 8 7 36 36 H 1.08996 * 109.47461 * 24.99626 * 9 8 7 37 37 H 0.96995 * 119.99942 * 0.02562 * 12 10 9 38 38 H 1.08994 * 109.46593 * 60.00016 * 13 12 10 39 39 H 1.08998 * 109.46712 * 299.99956 * 13 12 10 40 40 H 1.09007 * 109.57832 * 68.10749 * 16 14 13 41 41 H 1.08997 * 109.41145 * 308.02670 * 16 14 13 42 42 H 1.09002 * 109.51245 * 177.49181 * 18 17 16 43 43 H 1.09001 * 109.55845 * 57.36463 * 18 17 16 44 44 H 1.08996 * 109.68249 * 292.58281 * 19 18 17 45 45 H 1.09002 * 109.71135 * 172.04432 * 19 18 17 46 46 H 0.96994 * 120.00145 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 0.0043 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6458 -0.0061 7 6 4.0230 2.5511 -0.0056 8 6 3.4346 1.3029 0.0007 9 6 4.2839 0.0580 0.0007 10 6 4.4583 -0.4309 -1.4142 11 8 3.9433 0.1719 -2.3319 12 7 5.1866 -1.5381 -1.6595 13 6 5.3557 -2.0137 -3.0349 14 6 6.2180 -3.2775 -3.0350 15 1 7.1959 -3.0555 -2.6078 16 6 6.3890 -3.7821 -4.4680 17 8 7.0314 -5.0590 -4.4457 18 6 6.2854 -6.0777 -3.7751 19 6 6.1124 -5.6897 -2.3022 20 7 5.5581 -4.3278 -2.2431 21 6 4.4574 -4.0473 -1.4783 22 1 3.7730 -3.2690 -1.7820 23 6 4.2214 -4.7632 -0.3127 24 7 5.1566 -5.5488 0.1779 25 14 2.5766 -4.6115 0.5597 26 1 2.6404 -3.5045 1.5473 27 1 1.5127 -4.3259 -0.4361 28 1 2.2693 -5.8838 1.2613 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2245 2.3566 0.0082 33 1 1.4007 4.5174 -0.0016 34 1 5.0999 2.6328 -0.0102 35 1 3.7959 -0.7148 0.5945 36 1 5.2599 0.2840 0.4299 37 1 5.5982 -2.0204 -0.9255 38 1 5.8430 -1.2408 -3.6292 39 1 4.3795 -2.2403 -3.4635 40 1 6.9993 -3.0774 -5.0329 41 1 5.4103 -3.8749 -4.9386 42 1 6.8211 -7.0247 -3.8416 43 1 5.3059 -6.1800 -4.2422 44 1 7.0795 -5.7146 -1.8000 45 1 5.4285 -6.3858 -1.8165 46 1 4.9915 -6.0494 0.9921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673048098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:21 Heat of formation + Delta-G solvation = -50.120595 kcal Electronic energy + Delta-G solvation = -30148.452002 eV Core-core repulsion = 26039.824876 eV Total energy + Delta-G solvation = -4108.627126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76060 -39.18687 -38.29670 -38.11959 -35.33921 -33.56779 -33.19283 -31.55440 -31.20925 -30.46749 -28.24181 -27.52812 -27.13519 -25.18097 -23.46714 -22.90576 -22.55578 -21.58186 -19.87269 -19.55409 -18.34890 -17.17117 -17.05866 -16.29013 -15.98216 -15.79010 -15.67325 -15.31626 -14.98436 -14.65846 -14.61359 -14.39278 -14.21640 -13.90575 -13.84825 -13.58137 -13.29638 -13.08114 -12.82051 -12.62498 -12.32102 -12.06445 -11.65426 -11.61246 -11.46855 -11.17790 -11.05497 -10.88594 -10.74413 -10.41937 -10.28478 -10.05465 -9.67986 -9.56207 -9.46424 -9.12935 -8.98730 -8.68205 -8.62542 -8.24199 -6.74920 -5.92493 -3.41384 1.09152 1.38971 3.12444 3.21571 3.27044 3.34363 3.37533 3.67381 4.02313 4.33246 4.42438 4.52445 4.62046 4.77798 4.92338 5.03154 5.06556 5.12656 5.24895 5.26037 5.37763 5.44568 5.46701 5.60410 5.64758 5.71924 5.79385 5.86963 5.99030 6.01440 6.10176 6.13178 6.14912 6.23841 6.31946 6.51139 6.56014 6.75546 7.05561 7.13928 7.19356 7.46826 7.69830 7.85178 8.01240 8.23790 8.28343 8.86896 9.04215 9.64697 10.23677 11.14252 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.003961 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.182484 B = 7067.293604 C = 8389.716803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.184 3.816 4 C -0.264 4.264 5 C 0.128 3.872 6 N -0.510 5.510 7 C 0.141 3.859 8 C -0.139 4.139 9 C -0.093 4.093 10 C 0.515 3.485 11 O -0.559 6.559 12 N -0.695 5.695 13 C 0.137 3.863 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.056 3.944 17 O -0.392 6.392 18 C 0.034 3.966 19 C 0.144 3.856 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.074 0.926 23 C 0.009 3.991 24 N -0.900 5.900 25 Si 0.895 3.105 26 H -0.283 1.283 27 H -0.279 1.279 28 H -0.290 1.290 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.415 0.585 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.029 0.971 45 H 0.092 0.908 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 10.042 0.270 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.210 6.210 3 C 0.130 3.870 4 C -0.285 4.285 5 C -0.028 4.028 6 N -0.222 5.222 7 C -0.014 4.014 8 C -0.142 4.142 9 C -0.134 4.134 10 C 0.300 3.700 11 O -0.438 6.438 12 N -0.347 5.347 13 C 0.013 3.987 14 C 0.018 3.982 15 H 0.059 0.941 16 C -0.023 4.023 17 O -0.311 6.311 18 C -0.043 4.043 19 C 0.019 3.981 20 N -0.317 5.317 21 C -0.383 4.383 22 H 0.092 0.908 23 C -0.190 4.190 24 N -0.544 5.544 25 Si 0.725 3.275 26 H -0.209 1.209 27 H -0.205 1.205 28 H -0.217 1.217 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.177 0.823 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.253 0.747 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.110 0.890 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.115 10.877 -0.309 11.633 hybrid contribution -1.753 -1.099 1.027 2.310 sum -5.868 9.778 0.718 11.426 Atomic orbital electron populations 1.23138 0.77998 1.04491 1.01285 1.86164 1.21677 1.26020 1.87154 1.19165 0.91974 0.84728 0.91165 1.22145 1.01318 0.93205 1.11835 1.22454 0.90377 0.96729 0.93282 1.67696 1.07054 1.31931 1.15526 1.22471 1.00117 0.86125 0.92701 1.19802 0.90917 0.96555 1.06929 1.20416 1.00767 0.95819 0.96384 1.20251 0.78668 0.80667 0.90391 1.90641 1.49108 1.57821 1.46277 1.45990 1.52143 1.26369 1.10183 1.21131 1.00019 0.94232 0.83330 1.21340 0.95200 0.89116 0.92522 0.94119 1.22793 0.97165 0.85538 0.96839 1.87803 1.46847 1.18973 1.77470 1.23352 0.94895 0.89950 0.96143 1.21409 0.98566 0.87586 0.90571 1.44090 1.32283 1.02580 1.52762 1.19244 0.99234 1.19386 1.00441 0.90804 1.25116 0.97410 1.00192 0.96282 1.69982 1.31615 1.31084 1.21703 0.86400 0.84189 0.77201 0.79758 1.20917 1.20483 1.21662 0.92500 0.92333 0.87887 0.84593 0.82829 0.82328 0.87399 0.87941 0.74670 0.92437 0.91708 0.89896 0.93588 0.90246 0.94152 0.95250 0.89008 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.84 101.05 0.99 1.28 16 2 O -0.30 -4.76 9.77 -18.92 -0.18 -4.94 16 3 C 0.18 2.80 6.70 -38.81 -0.26 2.54 16 4 C -0.26 -3.29 9.11 -39.30 -0.36 -3.65 16 5 C 0.13 1.57 11.17 -17.59 -0.20 1.37 16 6 N -0.51 -7.23 10.36 -13.33 -0.14 -7.37 16 7 C 0.14 1.98 10.83 -17.60 -0.19 1.79 16 8 C -0.14 -2.12 4.40 -104.34 -0.46 -2.58 16 9 C -0.09 -1.43 5.60 -29.03 -0.16 -1.59 16 10 C 0.51 9.47 7.82 -10.98 -0.09 9.38 16 11 O -0.56 -11.92 16.03 5.56 0.09 -11.83 16 12 N -0.70 -12.87 3.76 -60.29 -0.23 -13.10 16 13 C 0.14 2.54 4.44 -4.04 -0.02 2.52 16 14 C 0.13 2.42 3.19 -67.64 -0.22 2.21 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 16 C 0.06 0.98 6.27 37.10 0.23 1.22 16 17 O -0.39 -7.60 10.74 -35.23 -0.38 -7.98 16 18 C 0.03 0.66 6.98 37.31 0.26 0.92 16 19 C 0.14 3.24 5.39 -3.53 -0.02 3.22 16 20 N -0.59 -13.44 3.04 -164.54 -0.50 -13.94 16 21 C -0.25 -6.17 7.07 -15.06 -0.11 -6.28 16 22 H 0.07 1.85 5.78 -52.49 -0.30 1.55 16 23 C 0.01 0.24 5.04 -17.43 -0.09 0.15 16 24 N -0.90 -23.83 11.15 55.49 0.62 -23.21 16 25 Si 0.90 20.43 29.57 -169.99 -5.03 15.40 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.06 0.50 7.70 -51.93 -0.40 0.10 16 30 H 0.06 0.58 7.72 -51.93 -0.40 0.18 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.14 1.30 6.47 -52.49 -0.34 0.96 16 33 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.11 1.74 7.78 -51.93 -0.40 1.34 16 36 H 0.10 1.23 8.06 -51.93 -0.42 0.81 16 37 H 0.42 7.95 7.30 -40.82 -0.30 7.66 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.32 7.58 -51.93 -0.39 0.93 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 2.27 6.33 -51.93 -0.33 1.94 16 46 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -31.36 373.88 -7.43 -38.80 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.65 Total: 10.04 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -0.67 Total: 12.49 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.25 Total: -57.61 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.47 Total: -24.75 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.36 -7.43 -38.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673048098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.324 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds