Wall clock time and date at job start Tue Mar 31 2020 19:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35738 * 116.99910 * 2 1 4 4 C 1.39289 * 120.84831 * 0.20772 * 3 2 1 5 5 C 1.37950 * 119.09319 * 180.25114 * 4 3 2 6 6 N 1.31979 * 120.82341 * 359.78732 * 5 4 3 7 7 C 1.31942 * 121.86266 * 359.97438 * 6 5 4 8 8 C 1.37990 * 120.82747 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.45991 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.46600 * 264.99952 * 9 8 7 11 11 O 1.21277 * 120.00123 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99476 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99565 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.46647 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.71519 * 299.93521 * 14 13 12 16 16 C 1.52883 * 109.61462 * 179.63085 * 14 13 12 17 17 O 1.42961 * 109.29696 * 188.11162 * 16 14 13 18 18 C 1.42963 * 114.16256 * 62.45744 * 17 16 14 19 19 C 1.53300 * 109.22355 * 297.41197 * 18 17 16 20 20 N 1.47156 * 108.37967 * 52.30669 * 19 18 17 21 21 C 1.36936 * 120.98310 * 129.44445 * 20 19 18 22 22 H 1.08000 * 119.99948 * 210.91794 * 21 20 19 23 23 C 1.38812 * 119.99919 * 30.91755 * 21 20 19 24 24 N 1.31620 * 120.00186 * 11.39554 * 23 21 20 25 25 Si 1.86800 * 119.99928 * 191.39283 * 23 21 20 26 26 H 1.48497 * 109.47099 * 269.99916 * 25 23 21 27 27 H 1.48498 * 109.46951 * 30.00026 * 25 23 21 28 28 H 1.48505 * 109.47099 * 149.99863 * 25 23 21 29 29 H 1.08997 * 109.46839 * 299.99890 * 1 2 3 30 30 H 1.08995 * 109.46989 * 59.99870 * 1 2 3 31 31 H 1.09002 * 109.46994 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.44980 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.58517 * 179.76987 * 5 4 3 34 34 H 1.08003 * 119.59103 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47361 * 145.00205 * 9 8 7 36 36 H 1.08996 * 109.47461 * 24.99626 * 9 8 7 37 37 H 0.96995 * 119.99942 * 0.02562 * 12 10 9 38 38 H 1.08994 * 109.46593 * 60.00016 * 13 12 10 39 39 H 1.08998 * 109.46712 * 299.99956 * 13 12 10 40 40 H 1.09007 * 109.57832 * 68.10749 * 16 14 13 41 41 H 1.08997 * 109.41145 * 308.02670 * 16 14 13 42 42 H 1.09002 * 109.51245 * 177.49181 * 18 17 16 43 43 H 1.09001 * 109.55845 * 57.36463 * 18 17 16 44 44 H 1.08996 * 109.68249 * 292.58281 * 19 18 17 45 45 H 1.09002 * 109.71135 * 172.04432 * 19 18 17 46 46 H 0.96994 * 120.00145 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 0.0043 5 6 1.9676 3.5981 -0.0011 6 7 3.2865 3.6458 -0.0061 7 6 4.0230 2.5511 -0.0056 8 6 3.4346 1.3029 0.0007 9 6 4.2839 0.0580 0.0007 10 6 4.4583 -0.4309 -1.4142 11 8 3.9433 0.1719 -2.3319 12 7 5.1866 -1.5381 -1.6595 13 6 5.3557 -2.0137 -3.0349 14 6 6.2180 -3.2775 -3.0350 15 1 7.1959 -3.0555 -2.6078 16 6 6.3890 -3.7821 -4.4680 17 8 7.0314 -5.0590 -4.4457 18 6 6.2854 -6.0777 -3.7751 19 6 6.1124 -5.6897 -2.3022 20 7 5.5581 -4.3278 -2.2431 21 6 4.4574 -4.0473 -1.4783 22 1 3.7730 -3.2690 -1.7820 23 6 4.2214 -4.7632 -0.3127 24 7 5.1566 -5.5488 0.1779 25 14 2.5766 -4.6115 0.5597 26 1 2.6404 -3.5045 1.5473 27 1 1.5127 -4.3259 -0.4361 28 1 2.2693 -5.8838 1.2613 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2245 2.3566 0.0082 33 1 1.4007 4.5174 -0.0016 34 1 5.0999 2.6328 -0.0102 35 1 3.7959 -0.7148 0.5945 36 1 5.2599 0.2840 0.4299 37 1 5.5982 -2.0204 -0.9255 38 1 5.8430 -1.2408 -3.6292 39 1 4.3795 -2.2403 -3.4635 40 1 6.9993 -3.0774 -5.0329 41 1 5.4103 -3.8749 -4.9386 42 1 6.8211 -7.0247 -3.8416 43 1 5.3059 -6.1800 -4.2422 44 1 7.0795 -5.7146 -1.8000 45 1 5.4285 -6.3858 -1.8165 46 1 4.9915 -6.0494 0.9921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673048098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:20 Heat of formation + Delta-G solvation = -71.877803 kcal Electronic energy + Delta-G solvation = -30149.395466 eV Core-core repulsion = 26039.824876 eV Total energy + Delta-G solvation = -4109.570590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.81900 -40.68287 -39.80180 -39.17520 -36.94423 -35.27238 -34.35907 -33.23225 -32.20870 -32.14093 -29.45142 -28.89055 -28.43134 -26.64042 -25.23265 -23.90171 -23.79439 -23.05376 -21.45073 -21.10200 -19.35893 -18.75639 -18.18589 -17.76854 -17.59830 -17.27869 -16.76137 -16.63258 -16.27095 -16.15486 -15.89631 -15.84275 -15.44943 -15.41424 -15.19077 -14.98574 -14.66615 -14.48773 -14.16731 -14.07969 -13.70117 -13.23321 -13.14767 -12.94383 -12.75290 -12.70571 -12.52212 -12.47326 -12.15637 -12.13396 -11.99960 -11.84320 -11.30439 -10.99484 -10.65719 -10.55631 -10.52342 -10.09957 -9.81521 -9.73052 -8.61229 -7.86161 -5.36168 0.09505 0.34597 1.41722 1.45975 1.52313 1.77338 2.17833 2.37400 2.47814 2.87921 3.04090 3.30421 3.45124 3.48399 3.65838 3.82074 3.92020 4.04479 4.08065 4.17490 4.22751 4.26688 4.28913 4.36513 4.40754 4.47549 4.59661 4.60815 4.64075 4.64369 4.66489 4.73980 4.79681 4.95031 5.00853 5.08877 5.12402 5.31063 5.58785 5.59935 5.65722 5.71411 6.21107 6.29694 6.38011 6.74651 7.01776 7.12129 7.38849 7.77815 8.33830 9.18500 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.003961 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.182484 B = 7067.293604 C = 8389.716803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.162 3.838 4 C -0.261 4.261 5 C 0.127 3.873 6 N -0.528 5.528 7 C 0.137 3.863 8 C -0.163 4.163 9 C -0.086 4.086 10 C 0.515 3.485 11 O -0.589 6.589 12 N -0.697 5.697 13 C 0.144 3.856 14 C 0.127 3.873 15 H 0.039 0.961 16 C 0.057 3.943 17 O -0.397 6.397 18 C 0.046 3.954 19 C 0.150 3.850 20 N -0.606 5.606 21 C -0.239 4.239 22 H 0.067 0.933 23 C -0.030 4.030 24 N -0.926 5.926 25 Si 0.942 3.058 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.297 1.297 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.190 0.810 34 H 0.178 0.822 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.412 0.588 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.118 0.882 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.008 0.992 45 H 0.065 0.935 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 11.565 -0.281 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.108 3.892 4 C -0.281 4.281 5 C -0.029 4.029 6 N -0.240 5.240 7 C -0.019 4.019 8 C -0.166 4.166 9 C -0.126 4.126 10 C 0.302 3.698 11 O -0.471 6.471 12 N -0.347 5.347 13 C 0.020 3.980 14 C 0.021 3.979 15 H 0.057 0.943 16 C -0.022 4.022 17 O -0.315 6.315 18 C -0.032 4.032 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.369 4.369 22 H 0.084 0.916 23 C -0.227 4.227 24 N -0.571 5.571 25 Si 0.771 3.229 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.223 1.223 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.183 0.817 33 H 0.207 0.793 34 H 0.195 0.805 35 H 0.114 0.886 36 H 0.151 0.849 37 H 0.249 0.751 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.136 0.864 41 H 0.065 0.935 42 H 0.123 0.877 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.562 12.413 -0.873 13.254 hybrid contribution -1.650 -1.515 1.151 2.518 sum -6.212 10.898 0.278 12.547 Atomic orbital electron populations 1.23401 0.76073 1.05307 1.03028 1.86107 1.23947 1.26936 1.87436 1.19511 0.92427 0.85431 0.91852 1.22464 1.02755 0.92279 1.10652 1.23086 0.90048 0.98084 0.91661 1.67764 1.08123 1.31927 1.16173 1.22775 1.01154 0.85754 0.92183 1.19938 0.91371 0.96747 1.08568 1.20375 1.02453 0.95740 0.94030 1.20753 0.77600 0.80028 0.91407 1.90614 1.50204 1.58679 1.47562 1.46026 1.52198 1.26454 1.10059 1.21062 0.98884 0.94446 0.83638 1.21459 0.94739 0.88605 0.93145 0.94310 1.22916 0.98053 0.85479 0.95717 1.87807 1.47143 1.19495 1.77090 1.23221 0.95594 0.90979 0.93434 1.21234 0.96567 0.87184 0.92610 1.44295 1.32243 1.03669 1.52953 1.19234 0.99383 1.18277 1.00021 0.91564 1.25560 0.99355 1.00654 0.97124 1.70096 1.32804 1.32240 1.21995 0.85663 0.81639 0.76724 0.78834 1.20461 1.20907 1.22337 0.90030 0.91244 0.87678 0.81731 0.79320 0.80547 0.88569 0.84923 0.75072 0.90366 0.93759 0.86429 0.93518 0.87731 0.93951 0.97417 0.91633 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.84 113.37 1.12 1.45 16 2 O -0.33 -10.43 9.77 -90.62 -0.89 -11.32 16 3 C 0.16 4.78 6.70 22.77 0.15 4.93 16 4 C -0.26 -5.96 9.11 22.45 0.20 -5.76 16 5 C 0.13 2.80 11.17 84.60 0.95 3.74 16 6 N -0.53 -14.02 10.36 -196.09 -2.03 -16.05 16 7 C 0.14 3.67 10.83 84.62 0.92 4.59 16 8 C -0.16 -4.88 4.40 -19.68 -0.09 -4.96 16 9 C -0.09 -2.59 5.60 29.10 0.16 -2.43 16 10 C 0.51 18.85 7.82 87.66 0.69 19.53 16 11 O -0.59 -25.06 16.03 -3.02 -0.05 -25.11 16 12 N -0.70 -25.66 3.76 -463.05 -1.74 -27.40 16 13 C 0.14 5.22 4.44 86.38 0.38 5.60 16 14 C 0.13 4.78 3.19 44.83 0.14 4.93 16 15 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 16 C 0.06 1.88 6.27 71.94 0.45 2.33 16 17 O -0.40 -14.52 10.74 -148.98 -1.60 -16.12 16 18 C 0.05 1.68 6.98 72.08 0.50 2.19 16 19 C 0.15 6.76 5.39 86.35 0.47 7.23 16 20 N -0.61 -27.54 3.04 -674.48 -2.05 -29.59 16 21 C -0.24 -11.74 7.07 84.03 0.59 -11.14 16 22 H 0.07 3.36 5.78 -2.91 -0.02 3.34 16 23 C -0.03 -1.55 5.04 84.86 0.43 -1.12 16 24 N -0.93 -50.01 11.15 21.65 0.24 -49.77 16 25 Si 0.94 42.62 29.57 68.60 2.03 44.65 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 28 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 29 H 0.08 1.25 7.70 -2.39 -0.02 1.23 16 30 H 0.07 1.26 7.72 -2.39 -0.02 1.24 16 31 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.17 2.63 6.47 -2.91 -0.02 2.61 16 33 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.18 3.82 8.06 -2.91 -0.02 3.79 16 35 H 0.10 3.14 7.78 -2.39 -0.02 3.12 16 36 H 0.13 3.06 8.06 -2.39 -0.02 3.04 16 37 H 0.41 15.82 7.30 -92.71 -0.68 15.14 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.04 1.79 7.58 -2.39 -0.02 1.78 16 40 H 0.12 3.10 8.14 -2.38 -0.02 3.08 16 41 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16 42 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.07 3.31 6.33 -2.39 -0.02 3.29 16 46 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -67.97 373.88 1.31 -66.66 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.33 Total: 32.94 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 7.06 Total: 31.11 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.58 Total: -122.81 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -2.53 Total: -52.55 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -67.97 1.31 -66.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673048098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.221 kcal (2) G-P(sol) polarization free energy of solvation -67.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds