Wall clock time and date at job start Tue Mar 31 2020 18:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34590 * 119.47814 * 2 1 4 4 C 1.38003 * 120.46114 * 179.97438 * 3 2 1 5 5 C 1.47451 * 120.25772 * 180.02562 * 4 3 2 6 6 O 1.21611 * 120.00131 * 259.72955 * 5 4 3 7 7 N 1.34776 * 120.00330 * 79.73764 * 5 4 3 8 8 C 1.46932 * 120.62857 * 5.03097 * 7 5 4 9 9 C 1.52763 * 109.00611 * 233.58639 * 8 7 5 10 10 C 1.53040 * 109.38480 * 305.58569 * 9 8 7 11 11 O 1.42901 * 109.44985 * 301.22901 * 10 9 8 12 12 C 1.53002 * 109.45988 * 181.26331 * 10 9 8 13 13 N 1.46497 * 109.47156 * 59.93387 * 12 10 9 14 14 C 1.36931 * 120.00134 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00357 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00135 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99975 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99868 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47617 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47120 * 120.00539 * 18 16 14 21 21 H 1.48506 * 109.47214 * 240.00077 * 18 16 14 22 22 C 1.53037 * 109.53376 * 61.24154 * 10 9 8 23 23 C 1.46924 * 120.63489 * 185.31219 * 7 5 4 24 24 C 1.41597 * 119.47923 * 359.97438 * 4 3 2 25 25 C 1.35966 * 119.01398 * 0.02562 * 24 4 3 26 26 C 1.34540 * 119.47598 * 179.72689 * 2 1 3 27 27 O 1.21966 * 119.74976 * 359.97438 * 26 2 1 28 28 H 1.08995 * 109.47603 * 90.00219 * 1 2 3 29 29 H 1.08994 * 109.47321 * 329.99542 * 1 2 3 30 30 H 1.09004 * 109.47200 * 210.00264 * 1 2 3 31 31 H 1.08001 * 119.76975 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.58621 * 353.42447 * 8 7 5 33 33 H 1.08999 * 109.58577 * 113.84361 * 8 7 5 34 34 H 1.09009 * 109.56015 * 185.55066 * 9 8 7 35 35 H 1.09001 * 109.35980 * 65.50328 * 9 8 7 36 36 H 0.96695 * 114.00348 * 300.06295 * 11 10 9 37 37 H 1.08992 * 109.46636 * 179.97438 * 12 10 9 38 38 H 1.09005 * 109.46632 * 299.93399 * 12 10 9 39 39 H 0.97000 * 119.99818 * 359.97438 * 13 12 10 40 40 H 0.96995 * 119.99923 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.49675 * 178.68306 * 22 10 9 42 42 H 1.09006 * 109.50108 * 58.58860 * 22 10 9 43 43 H 1.08994 * 109.59131 * 246.15714 * 23 7 5 44 44 H 1.08999 * 109.58364 * 6.58299 * 23 7 5 45 45 H 1.08007 * 120.49099 * 179.97438 * 24 4 3 46 46 H 1.07998 * 120.25296 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1953 0.0005 5 6 4.2281 2.4815 0.0011 6 8 4.6897 2.9204 -1.0349 7 7 4.3759 3.1708 1.1498 8 6 3.9216 2.6037 2.4269 9 6 2.9891 3.6018 3.1109 10 6 3.6969 4.9526 3.2390 11 8 4.8986 4.7903 3.9950 12 6 2.7761 5.9449 3.9521 13 7 2.4484 5.4352 5.2859 14 6 1.6317 6.1583 6.1136 15 1 1.2287 7.1042 5.7830 16 6 1.3207 5.6750 7.3773 17 7 1.8114 4.5220 7.7800 18 14 0.2060 6.6612 8.5060 19 1 -0.2102 7.9117 7.8218 20 1 -0.9966 5.8566 8.8404 21 1 0.9381 6.9989 9.7532 22 6 4.0391 5.4852 1.8457 23 6 4.9886 4.5062 1.1481 24 6 4.2250 -0.0252 0.0016 25 6 3.5344 -1.1964 0.0016 26 6 2.1270 -1.1712 0.0056 27 8 1.5029 -2.2191 0.0111 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 0.8899 0.5139 30 1 -0.3634 -0.8900 0.5139 31 1 1.5750 2.0998 0.0004 32 1 3.3863 1.6721 2.2431 33 1 4.7819 2.4126 3.0684 34 1 2.7249 3.2339 4.1024 35 1 2.0852 3.7198 2.5133 36 1 4.7575 4.4550 4.8909 37 1 3.2802 6.9068 4.0439 38 1 1.8596 6.0691 3.3753 39 1 2.8094 4.5851 5.5824 40 1 1.5944 4.1846 8.6631 41 1 4.5221 6.4581 1.9367 42 1 3.1252 5.5856 1.2600 43 1 5.9376 4.4736 1.6832 44 1 5.1569 4.8297 0.1209 45 1 5.3050 -0.0257 0.0016 46 1 4.0617 -2.1389 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674085320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:34 Heat of formation + Delta-G solvation = -64.136576 kcal Electronic energy + Delta-G solvation = -29687.314794 eV Core-core repulsion = 25578.079889 eV Total energy + Delta-G solvation = -4109.234905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.81134 -40.32432 -38.60834 -37.09844 -35.59201 -34.98941 -34.08038 -32.14858 -31.44521 -30.51735 -30.14484 -28.19250 -26.79636 -24.84657 -23.96378 -23.41550 -23.25012 -21.90692 -20.56141 -19.47685 -17.98740 -17.90247 -17.59212 -17.09693 -16.59667 -16.30600 -15.88286 -15.72114 -15.09932 -14.89619 -14.64646 -14.46746 -14.25581 -14.11828 -13.59392 -13.56672 -13.38666 -13.24174 -13.00341 -12.86017 -12.67186 -12.47581 -12.39248 -11.99436 -11.93994 -11.60365 -11.18968 -11.13415 -11.09218 -10.91892 -10.53119 -10.37778 -10.32477 -10.19542 -10.06649 -9.77134 -9.51666 -9.02631 -8.68430 -8.29874 -7.09050 -5.91299 -3.20556 0.44774 1.27551 2.09687 2.47102 2.88277 3.27264 3.34852 3.41465 3.43125 4.10576 4.14665 4.43032 4.46927 4.49420 4.52692 4.72006 4.74981 4.85281 4.90511 4.96970 5.05350 5.10577 5.24260 5.31806 5.42278 5.46547 5.53164 5.56818 5.60929 5.72641 5.76527 5.84745 5.89344 5.94158 6.01180 6.02910 6.21089 6.28468 6.46293 6.58188 6.61108 6.61905 7.25313 7.58570 7.63561 7.96126 7.99855 8.27631 9.38581 9.91609 10.25517 11.31428 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.003130 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.810001 B = 8943.500624 C =10420.550395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.489 5.489 3 C 0.175 3.825 4 C -0.232 4.232 5 C 0.577 3.423 6 O -0.537 6.537 7 N -0.597 5.597 8 C 0.112 3.888 9 C -0.157 4.157 10 C 0.130 3.870 11 O -0.560 6.560 12 C 0.129 3.871 13 N -0.729 5.729 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.117 4.117 23 C 0.118 3.882 24 C 0.012 3.988 25 C -0.239 4.239 26 C 0.513 3.487 27 O -0.547 6.547 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.169 0.831 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.383 0.617 37 H 0.029 0.971 38 H 0.025 0.975 39 H 0.380 0.620 40 H 0.256 0.744 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.140 0.860 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -6.598 -16.110 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.197 5.197 3 C 0.043 3.957 4 C -0.241 4.241 5 C 0.363 3.637 6 O -0.414 6.414 7 N -0.329 5.329 8 C -0.011 4.011 9 C -0.196 4.196 10 C 0.089 3.911 11 O -0.367 6.367 12 C 0.001 3.999 13 N -0.375 5.375 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.207 4.207 17 N -0.582 5.582 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.155 4.155 23 C -0.004 4.004 24 C -0.010 4.010 25 C -0.261 4.261 26 C 0.315 3.685 27 O -0.429 6.429 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.186 0.814 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.233 0.767 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.214 0.786 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.158 0.842 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.771 -6.709 -17.137 18.611 hybrid contribution -0.886 0.173 1.505 1.755 sum 1.885 -6.536 -15.632 17.048 Atomic orbital electron populations 1.22310 0.76362 1.05758 1.04356 1.45132 1.09842 1.06664 1.58036 1.22073 0.92435 0.90079 0.91086 1.19349 0.92306 0.94979 1.17480 1.17781 0.79400 0.83236 0.83273 1.90806 1.49416 1.69329 1.31826 1.48164 1.59645 1.18143 1.06980 1.21668 0.98911 0.96463 0.84017 1.22482 0.98417 0.96100 1.02579 1.21287 0.85100 0.93653 0.91093 1.86373 1.31163 1.88978 1.30232 1.21314 0.95458 0.95346 0.87818 1.42285 1.58868 1.24506 1.11864 1.19237 1.21099 1.01860 0.95064 0.91094 1.24725 1.00934 0.97332 0.97690 1.69632 1.48775 1.19845 1.19910 0.86114 0.80075 0.79106 0.80850 1.20548 1.21824 1.21757 1.21862 1.00356 0.99296 0.94029 1.21581 0.96355 0.80573 1.01887 1.21305 1.00796 0.90193 0.88685 1.22003 0.92302 1.00020 1.11795 1.17245 0.89488 0.82586 0.79160 1.90947 1.69543 1.29913 1.52459 0.90167 0.89031 0.88223 0.81393 0.90202 0.90350 0.88938 0.91036 0.76737 0.95317 0.95736 0.78551 0.93421 0.89777 0.90473 0.90319 0.89226 0.84249 0.82781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 10.34 59.85 0.62 0.97 16 2 N -0.49 -4.48 2.95 -126.74 -0.37 -4.86 16 3 C 0.17 1.46 9.58 -16.43 -0.16 1.30 16 4 C -0.23 -2.29 3.80 -104.95 -0.40 -2.68 16 5 C 0.58 6.82 7.10 -12.51 -0.09 6.73 16 6 O -0.54 -8.10 16.54 5.27 0.09 -8.01 16 7 N -0.60 -6.68 2.98 -174.29 -0.52 -7.19 16 8 C 0.11 1.20 6.09 -3.93 -0.02 1.18 16 9 C -0.16 -1.99 4.91 -26.83 -0.13 -2.12 16 10 C 0.13 1.82 0.71 -90.58 -0.06 1.76 16 11 O -0.56 -8.40 11.71 -35.23 -0.41 -8.81 16 12 C 0.13 2.32 5.40 -4.04 -0.02 2.29 16 13 N -0.73 -16.42 5.07 -59.91 -0.30 -16.73 16 14 C -0.24 -6.31 9.99 -15.06 -0.15 -6.46 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -26.30 13.06 55.49 0.72 -25.58 16 18 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.12 -1.39 5.11 -26.61 -0.14 -1.53 16 23 C 0.12 1.36 6.18 -3.71 -0.02 1.34 16 24 C 0.01 0.11 9.86 -39.12 -0.39 -0.28 16 25 C -0.24 -2.38 9.97 -39.44 -0.39 -2.78 16 26 C 0.51 6.06 7.40 -15.41 -0.11 5.95 16 27 O -0.55 -8.26 16.58 4.95 0.08 -8.17 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.39 8.00 -51.93 -0.42 -0.02 16 30 H 0.10 0.77 7.36 -51.93 -0.38 0.39 16 31 H 0.17 0.99 8.02 -52.49 -0.42 0.57 16 32 H 0.08 0.77 5.99 -51.93 -0.31 0.46 16 33 H 0.08 0.87 7.81 -51.93 -0.41 0.47 16 34 H 0.09 1.37 6.82 -51.92 -0.35 1.01 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.38 5.84 7.85 45.56 0.36 6.19 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.38 8.70 5.58 -40.82 -0.23 8.47 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.95 7.81 -51.93 -0.41 0.54 16 44 H 0.09 1.05 7.04 -51.93 -0.37 0.68 16 45 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 46 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -33.58 375.05 -7.51 -41.09 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.86 Total: 10.96 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.57 Total: 5.29 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.47 Total: -54.36 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.24 Total: -25.00 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.58 -7.51 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674085320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.043 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds