Wall clock time and date at job start Tue Mar 31 2020 18:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34590 * 119.47814 * 2 1 4 4 C 1.38003 * 120.46114 * 179.97438 * 3 2 1 5 5 C 1.47451 * 120.25772 * 180.02562 * 4 3 2 6 6 O 1.21611 * 120.00131 * 259.72955 * 5 4 3 7 7 N 1.34776 * 120.00330 * 79.73764 * 5 4 3 8 8 C 1.46932 * 120.62857 * 5.03097 * 7 5 4 9 9 C 1.52763 * 109.00611 * 233.58639 * 8 7 5 10 10 C 1.53040 * 109.38480 * 305.58569 * 9 8 7 11 11 O 1.42901 * 109.44985 * 301.22901 * 10 9 8 12 12 C 1.53002 * 109.45988 * 181.26331 * 10 9 8 13 13 N 1.46497 * 109.47156 * 59.93387 * 12 10 9 14 14 C 1.36931 * 120.00134 * 180.02562 * 13 12 10 15 15 H 1.08000 * 120.00357 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00135 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99975 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99868 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47617 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47120 * 120.00539 * 18 16 14 21 21 H 1.48506 * 109.47214 * 240.00077 * 18 16 14 22 22 C 1.53037 * 109.53376 * 61.24154 * 10 9 8 23 23 C 1.46924 * 120.63489 * 185.31219 * 7 5 4 24 24 C 1.41597 * 119.47923 * 359.97438 * 4 3 2 25 25 C 1.35966 * 119.01398 * 0.02562 * 24 4 3 26 26 C 1.34540 * 119.47598 * 179.72689 * 2 1 3 27 27 O 1.21966 * 119.74976 * 359.97438 * 26 2 1 28 28 H 1.08995 * 109.47603 * 90.00219 * 1 2 3 29 29 H 1.08994 * 109.47321 * 329.99542 * 1 2 3 30 30 H 1.09004 * 109.47200 * 210.00264 * 1 2 3 31 31 H 1.08001 * 119.76975 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.58621 * 353.42447 * 8 7 5 33 33 H 1.08999 * 109.58577 * 113.84361 * 8 7 5 34 34 H 1.09009 * 109.56015 * 185.55066 * 9 8 7 35 35 H 1.09001 * 109.35980 * 65.50328 * 9 8 7 36 36 H 0.96695 * 114.00348 * 300.06295 * 11 10 9 37 37 H 1.08992 * 109.46636 * 179.97438 * 12 10 9 38 38 H 1.09005 * 109.46632 * 299.93399 * 12 10 9 39 39 H 0.97000 * 119.99818 * 359.97438 * 13 12 10 40 40 H 0.96995 * 119.99923 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.49675 * 178.68306 * 22 10 9 42 42 H 1.09006 * 109.50108 * 58.58860 * 22 10 9 43 43 H 1.08994 * 109.59131 * 246.15714 * 23 7 5 44 44 H 1.08999 * 109.58364 * 6.58299 * 23 7 5 45 45 H 1.08007 * 120.49099 * 179.97438 * 24 4 3 46 46 H 1.07998 * 120.25296 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1273 1.1717 0.0000 4 6 3.5071 1.1953 0.0005 5 6 4.2281 2.4815 0.0011 6 8 4.6897 2.9204 -1.0349 7 7 4.3759 3.1708 1.1498 8 6 3.9216 2.6037 2.4269 9 6 2.9891 3.6018 3.1109 10 6 3.6969 4.9526 3.2390 11 8 4.8986 4.7903 3.9950 12 6 2.7761 5.9449 3.9521 13 7 2.4484 5.4352 5.2859 14 6 1.6317 6.1583 6.1136 15 1 1.2287 7.1042 5.7830 16 6 1.3207 5.6750 7.3773 17 7 1.8114 4.5220 7.7800 18 14 0.2060 6.6612 8.5060 19 1 -0.2102 7.9117 7.8218 20 1 -0.9966 5.8566 8.8404 21 1 0.9381 6.9989 9.7532 22 6 4.0391 5.4852 1.8457 23 6 4.9886 4.5062 1.1481 24 6 4.2250 -0.0252 0.0016 25 6 3.5344 -1.1964 0.0016 26 6 2.1270 -1.1712 0.0056 27 8 1.5029 -2.2191 0.0111 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 0.8899 0.5139 30 1 -0.3634 -0.8900 0.5139 31 1 1.5750 2.0998 0.0004 32 1 3.3863 1.6721 2.2431 33 1 4.7819 2.4126 3.0684 34 1 2.7249 3.2339 4.1024 35 1 2.0852 3.7198 2.5133 36 1 4.7575 4.4550 4.8909 37 1 3.2802 6.9068 4.0439 38 1 1.8596 6.0691 3.3753 39 1 2.8094 4.5851 5.5824 40 1 1.5944 4.1846 8.6631 41 1 4.5221 6.4581 1.9367 42 1 3.1252 5.5856 1.2600 43 1 5.9376 4.4736 1.6832 44 1 5.1569 4.8297 0.1209 45 1 5.3050 -0.0257 0.0016 46 1 4.0617 -2.1389 0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674085320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:33 Heat of formation + Delta-G solvation = -88.081387 kcal Electronic energy + Delta-G solvation = -29688.353119 eV Core-core repulsion = 25578.079889 eV Total energy + Delta-G solvation = -4110.273230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.60787 -41.31340 -39.72380 -38.00670 -36.78428 -35.77124 -35.67265 -33.46596 -32.67693 -31.82121 -31.07339 -28.85382 -28.16934 -25.97312 -25.12900 -24.42629 -24.24148 -23.13242 -21.63784 -20.44849 -19.43492 -18.85604 -18.65850 -17.95920 -17.45977 -17.23131 -17.07727 -16.71285 -16.50332 -15.98116 -15.80553 -15.59220 -15.35911 -15.12200 -14.91131 -14.62577 -14.38945 -14.29830 -14.11819 -14.07088 -13.56583 -13.41605 -13.24561 -13.11119 -12.98750 -12.80570 -12.78491 -12.62103 -12.24253 -12.15689 -12.03751 -11.94919 -11.28790 -11.26893 -11.19311 -11.05750 -10.96026 -10.70150 -9.67811 -9.10237 -8.99436 -7.95690 -5.23020 -0.25619 0.45594 1.30778 1.48346 1.50345 1.58594 1.62324 1.98563 2.48174 2.56021 3.29280 3.32454 3.43406 3.52277 3.69372 3.72902 3.79310 3.82534 3.94184 4.07819 4.09695 4.27679 4.36187 4.37140 4.38134 4.47624 4.63122 4.73517 4.76333 4.79063 4.84820 4.88672 4.92244 4.94062 5.03477 5.08750 5.12477 5.19044 5.31901 5.36959 5.51365 5.53458 5.84472 6.26645 6.33516 6.77795 6.80254 7.03640 7.35258 8.07097 8.31249 9.27020 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.003130 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.810001 B = 8943.500624 C =10420.550395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.484 5.484 3 C 0.190 3.810 4 C -0.247 4.247 5 C 0.585 3.415 6 O -0.569 6.569 7 N -0.592 5.592 8 C 0.121 3.879 9 C -0.150 4.150 10 C 0.136 3.864 11 O -0.564 6.564 12 C 0.128 3.872 13 N -0.736 5.736 14 C -0.243 4.243 15 H 0.071 0.929 16 C -0.066 4.066 17 N -0.962 5.962 18 Si 0.965 3.035 19 H -0.270 1.270 20 H -0.294 1.294 21 H -0.296 1.296 22 C -0.111 4.111 23 C 0.122 3.878 24 C 0.023 3.977 25 C -0.253 4.253 26 C 0.501 3.499 27 O -0.591 6.591 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.200 0.800 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.381 0.619 37 H 0.018 0.982 38 H 0.031 0.969 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.155 0.845 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -5.681 -17.056 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.191 5.191 3 C 0.058 3.942 4 C -0.256 4.256 5 C 0.373 3.627 6 O -0.449 6.449 7 N -0.324 5.324 8 C -0.001 4.001 9 C -0.188 4.188 10 C 0.095 3.905 11 O -0.371 6.371 12 C 0.001 3.999 13 N -0.380 5.380 14 C -0.375 4.375 15 H 0.089 0.911 16 C -0.259 4.259 17 N -0.613 5.613 18 Si 0.795 3.205 19 H -0.194 1.194 20 H -0.221 1.221 21 H -0.223 1.223 22 C -0.149 4.149 23 C 0.000 4.000 24 C 0.001 3.999 25 C -0.274 4.274 26 C 0.305 3.695 27 O -0.477 6.477 28 H 0.112 0.888 29 H 0.139 0.861 30 H 0.103 0.897 31 H 0.217 0.783 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.230 0.770 37 H 0.036 0.964 38 H 0.049 0.951 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.173 0.827 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.336 -5.750 -18.105 19.139 hybrid contribution -0.740 -0.007 1.753 1.903 sum 1.596 -5.756 -16.352 17.409 Atomic orbital electron populations 1.22549 0.74750 1.06491 1.05545 1.45203 1.10966 1.06276 1.56606 1.22473 0.92188 0.90637 0.88926 1.19277 0.92994 0.94213 1.19071 1.17895 0.78769 0.83387 0.82648 1.90799 1.50874 1.70253 1.32944 1.48157 1.59192 1.18005 1.07005 1.21592 0.98573 0.96374 0.83546 1.22369 0.99112 0.95508 1.01845 1.21291 0.84189 0.93560 0.91488 1.86380 1.31629 1.88933 1.30163 1.21463 0.96395 0.95882 0.86194 1.42393 1.58285 1.24180 1.13190 1.19565 1.20627 1.01835 0.95499 0.91086 1.25400 1.02837 0.98443 0.99210 1.69755 1.50340 1.21235 1.19968 0.85201 0.78212 0.78213 0.78877 1.19410 1.22106 1.22325 1.21846 1.01151 0.99417 0.92515 1.21513 0.96030 0.80635 1.01800 1.21433 1.01574 0.89594 0.87255 1.22026 0.91690 1.00772 1.12961 1.17562 0.90170 0.82749 0.79014 1.90919 1.70414 1.31464 1.54947 0.88800 0.86056 0.89737 0.78339 0.88624 0.90537 0.91061 0.89922 0.77040 0.96381 0.95105 0.78963 0.93987 0.89472 0.89101 0.90788 0.89026 0.82733 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 10.34 127.77 1.32 1.84 16 2 N -0.48 -7.96 2.95 -673.11 -1.99 -9.95 16 3 C 0.19 2.60 9.58 84.21 0.81 3.41 16 4 C -0.25 -4.25 3.80 -20.08 -0.08 -4.33 16 5 C 0.59 12.39 7.10 86.67 0.62 13.01 16 6 O -0.57 -16.04 16.54 -4.07 -0.07 -16.11 16 7 N -0.59 -11.75 2.98 -823.57 -2.45 -14.21 16 8 C 0.12 2.32 6.09 86.22 0.52 2.85 16 9 C -0.15 -3.49 4.91 30.53 0.15 -3.34 16 10 C 0.14 3.58 0.71 -10.77 -0.01 3.58 16 11 O -0.56 -16.32 11.71 -148.98 -1.74 -18.07 16 12 C 0.13 4.43 5.40 86.38 0.47 4.90 16 13 N -0.74 -32.73 5.07 -343.46 -1.74 -34.47 16 14 C -0.24 -12.56 9.99 84.04 0.84 -11.72 16 15 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 16 C -0.07 -3.53 5.50 84.86 0.47 -3.07 16 17 N -0.96 -54.44 13.06 21.65 0.28 -54.16 16 18 Si 0.96 43.72 29.55 68.60 2.03 45.75 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 22 C -0.11 -2.37 5.11 30.67 0.16 -2.21 16 23 C 0.12 2.55 6.18 86.36 0.53 3.08 16 24 C 0.02 0.39 9.86 22.57 0.22 0.61 16 25 C -0.25 -4.82 9.97 22.36 0.22 -4.59 16 26 C 0.50 11.54 7.40 84.90 0.63 12.17 16 27 O -0.59 -18.15 16.58 -5.21 -0.09 -18.23 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.12 0.63 8.00 -2.39 -0.02 0.61 16 30 H 0.08 1.26 7.36 -2.39 -0.02 1.24 16 31 H 0.20 1.47 8.02 -2.91 -0.02 1.45 16 32 H 0.10 1.57 5.99 -2.39 -0.01 1.56 16 33 H 0.08 1.55 7.81 -2.39 -0.02 1.53 16 34 H 0.07 2.03 6.82 -2.38 -0.02 2.01 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.38 11.49 7.85 -74.06 -0.58 10.90 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.38 17.22 5.58 -92.71 -0.52 16.70 16 40 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.07 1.64 7.81 -2.39 -0.02 1.62 16 44 H 0.09 1.94 7.04 -2.39 -0.02 1.92 16 45 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -71.93 375.05 1.02 -70.91 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.08 Total: 32.36 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 6.87 Total: 16.18 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -5.90 Total: -112.78 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -1.90 Total: -52.41 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -71.93 1.02 -70.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674085320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.172 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds