Wall clock time and date at job start Tue Mar 31 2020 19:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36017 * 116.99543 * 2 1 4 4 C 1.35854 * 120.31455 * 0.02562 * 3 2 1 5 5 N 1.35439 * 120.77822 * 179.97438 * 4 3 2 6 6 H 0.96995 * 119.29711 * 179.97438 * 5 4 3 7 7 C 1.36432 * 121.40830 * 359.97438 * 5 4 3 8 8 C 1.48073 * 119.71749 * 179.97438 * 7 5 4 9 9 O 1.21512 * 119.99841 * 220.46068 * 8 7 5 10 10 N 1.34774 * 119.99657 * 40.46337 * 8 7 5 11 11 C 1.46922 * 120.63540 * 5.49616 * 10 8 7 12 12 C 1.53628 * 108.54267 * 126.36800 * 11 10 8 13 13 C 1.53043 * 109.24079 * 54.85875 * 12 11 10 14 14 C 1.53035 * 109.53554 * 298.51045 * 13 12 11 15 15 C 1.46926 * 120.62670 * 185.77704 * 10 8 7 16 16 H 1.09007 * 109.59058 * 113.79634 * 15 10 8 17 17 C 1.52998 * 109.58973 * 353.37477 * 15 10 8 18 18 N 1.46501 * 109.47160 * 69.67116 * 17 15 10 19 19 C 1.36942 * 120.00078 * 175.29983 * 18 17 15 20 20 H 1.08005 * 119.99517 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00267 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99432 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00038 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47319 * 59.99817 * 23 21 19 25 25 H 1.48504 * 109.47200 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47018 * 299.99262 * 23 21 19 27 27 C 1.36175 * 120.56083 * 0.02622 * 7 5 4 28 28 C 1.41575 * 120.31243 * 179.71916 * 3 2 1 29 29 O 1.22262 * 120.65262 * 0.02562 * 28 3 2 30 30 H 1.08990 * 109.47388 * 299.99575 * 1 2 3 31 31 H 1.08999 * 109.47342 * 59.99897 * 1 2 3 32 32 H 1.09006 * 109.46782 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.61392 * 359.97438 * 4 3 2 34 34 H 1.09001 * 109.59098 * 246.20345 * 11 10 8 35 35 H 1.09007 * 109.58666 * 6.62879 * 11 10 8 36 36 H 1.08998 * 109.63483 * 294.86923 * 12 11 10 37 37 H 1.09000 * 109.45684 * 174.74180 * 12 11 10 38 38 H 1.09004 * 109.45723 * 178.48890 * 13 12 11 39 39 H 1.08997 * 109.44659 * 58.52490 * 13 12 11 40 40 H 1.08999 * 109.49874 * 301.40912 * 14 13 12 41 41 H 1.09009 * 109.49784 * 181.31790 * 14 13 12 42 42 H 1.08994 * 109.47508 * 189.67769 * 17 15 10 43 43 H 1.09004 * 109.46935 * 309.67633 * 17 15 10 44 44 H 0.97001 * 120.00278 * 355.30019 * 18 17 15 45 45 H 0.97008 * 119.99638 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.40369 * 179.97438 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.3127 2.3553 0.0005 5 7 1.9177 3.5671 0.0010 6 1 1.3729 4.3696 0.0010 7 6 3.2771 3.6831 0.0016 8 6 3.8991 5.0268 0.0016 9 8 4.8812 5.2416 -0.6809 10 7 3.3760 6.0115 0.7586 11 6 2.2643 5.7377 1.6794 12 6 2.6589 6.2275 3.0810 13 6 3.0629 7.7017 3.0048 14 6 4.2751 7.8532 2.0831 15 6 3.9026 7.3805 0.6743 16 1 3.1414 8.0398 0.2570 17 6 5.1453 7.3981 -0.2179 18 7 4.7520 7.1543 -1.6079 19 6 5.6876 7.2199 -2.6058 20 1 6.7155 7.4509 -2.3679 21 6 5.3149 6.9895 -3.9229 22 7 4.0623 6.7074 -4.2126 23 14 6.5912 7.0782 -5.2839 24 1 7.6552 6.0735 -5.0311 25 1 5.9431 6.7943 -6.5896 26 1 7.1900 8.4368 -5.3131 27 6 4.0666 2.5736 0.0011 28 6 3.4598 1.2939 0.0060 29 8 4.1429 0.2799 0.0108 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2342 2.2974 0.0005 34 1 1.3722 6.2656 1.3425 35 1 2.0684 4.6657 1.7072 36 1 3.4980 5.6391 3.4519 37 1 1.8104 6.1172 3.7564 38 1 3.3178 8.0603 4.0021 39 1 2.2315 8.2859 2.6104 40 1 5.0990 7.2494 2.4635 41 1 4.5767 8.9001 2.0477 42 1 5.6325 8.3702 -0.1433 43 1 5.8362 6.6196 0.1060 44 1 3.8289 6.9465 -1.8215 45 1 3.8017 6.5467 -5.1331 46 1 5.1425 2.6683 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674387026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:00 Heat of formation + Delta-G solvation = -32.519938 kcal Electronic energy + Delta-G solvation = -30502.138091 eV Core-core repulsion = 26394.274186 eV Total energy + Delta-G solvation = -4107.863904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.68022 -41.30156 -39.25756 -38.80480 -38.34367 -36.34038 -34.02615 -33.70759 -32.68824 -31.71364 -31.39170 -28.44276 -27.82282 -26.25986 -25.08460 -24.46354 -24.18278 -23.05023 -21.78632 -21.07045 -19.93813 -19.33617 -18.78988 -18.15143 -17.32275 -17.22239 -16.85871 -16.74021 -16.59555 -16.18513 -15.59719 -15.55371 -15.40935 -15.28124 -15.15802 -14.99427 -14.66977 -14.55114 -14.19990 -14.06775 -13.89130 -13.71262 -13.58743 -13.14241 -12.78768 -12.73934 -12.37561 -12.25567 -12.19795 -12.08701 -11.89107 -11.73130 -11.50503 -11.38583 -10.95611 -10.82242 -10.51082 -10.15266 -9.62535 -8.76890 -8.68755 -7.88557 -5.06227 -0.29636 0.13989 1.37657 1.43322 1.47850 1.51663 1.70296 2.01834 2.33886 2.57539 2.60051 3.17222 3.47176 3.53046 3.68514 3.77846 3.80752 3.91792 3.96769 4.08391 4.31522 4.34400 4.36818 4.43637 4.47215 4.48575 4.56894 4.63113 4.65546 4.82147 4.86995 4.94557 5.01495 5.04694 5.10916 5.15974 5.26998 5.32576 5.46627 5.51494 5.54329 5.69424 5.82982 6.27682 6.34305 6.34534 6.91804 7.14744 7.42006 8.19173 8.42062 9.35538 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008969 B = 0.004712 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.996365 B = 5941.091707 C = 8166.873704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.324 6.324 3 C -0.060 4.060 4 C 0.070 3.930 5 N -0.534 5.534 6 H 0.443 0.557 7 C 0.165 3.835 8 C 0.513 3.487 9 O -0.470 6.470 10 N -0.600 5.600 11 C 0.082 3.918 12 C -0.128 4.128 13 C -0.113 4.113 14 C -0.123 4.123 15 C 0.151 3.849 16 H 0.082 0.918 17 C 0.154 3.846 18 N -0.704 5.704 19 C -0.214 4.214 20 H 0.061 0.939 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.960 3.040 24 H -0.292 1.292 25 H -0.295 1.295 26 H -0.276 1.276 27 C -0.257 4.257 28 C 0.381 3.619 29 O -0.575 6.575 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.229 0.771 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.370 0.630 45 H 0.245 0.755 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 -0.765 19.576 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.237 6.237 3 C -0.110 4.110 4 C -0.058 4.058 5 N -0.148 5.148 6 H 0.285 0.715 7 C 0.050 3.950 8 C 0.295 3.705 9 O -0.339 6.339 10 N -0.337 5.337 11 C -0.040 4.040 12 C -0.166 4.166 13 C -0.150 4.150 14 C -0.161 4.161 15 C 0.048 3.952 16 H 0.099 0.901 17 C 0.028 3.972 18 N -0.345 5.345 19 C -0.347 4.347 20 H 0.079 0.921 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.790 3.210 24 H -0.220 1.220 25 H -0.221 1.221 26 H -0.202 1.202 27 C -0.284 4.284 28 C 0.278 3.722 29 O -0.466 6.466 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.246 0.754 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.202 0.798 45 H 0.054 0.946 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.072 -1.325 19.130 25.020 hybrid contribution 0.643 0.000 -1.448 1.585 sum -15.429 -1.325 17.681 23.504 Atomic orbital electron populations 1.23521 0.76227 1.06078 1.03063 1.86230 1.23452 1.24403 1.89598 1.20038 0.93319 0.86413 1.11270 1.22338 1.00658 0.82296 1.00537 1.41276 1.03939 1.09927 1.59705 0.71472 1.20338 0.84123 0.94907 0.95655 1.18357 0.86355 0.83623 0.82116 1.91278 1.24672 1.78450 1.39533 1.47959 1.36386 1.07879 1.41451 1.22521 0.88935 1.02649 0.89871 1.21965 1.02756 0.96457 0.95471 1.21506 0.97140 0.96552 0.99808 1.21897 0.99508 1.02013 0.92712 1.21481 0.95449 0.81598 0.96637 0.90063 1.21045 0.95561 0.96345 0.84294 1.42292 1.07911 1.82806 1.01469 1.19413 0.91219 1.36363 0.87736 0.92131 1.25264 0.97952 1.04508 0.99111 1.69750 1.16811 1.57837 1.17730 0.85400 0.78600 0.77831 0.79137 1.21972 1.22105 1.20180 1.22075 1.01218 0.91447 1.13669 1.17230 0.88221 0.89095 0.77679 1.90775 1.67396 1.39110 1.49303 0.89852 0.90971 0.86952 0.75442 0.87747 0.88934 0.92663 0.87556 0.90019 0.90297 0.92482 0.89716 0.96258 0.96012 0.79840 0.94583 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 9.81 113.37 1.11 1.17 16 2 O -0.32 -8.57 10.33 -78.60 -0.81 -9.38 16 3 C -0.06 -1.66 6.71 22.54 0.15 -1.50 16 4 C 0.07 1.12 10.22 83.58 0.85 1.97 16 5 N -0.53 -9.61 3.78 -184.21 -0.70 -10.31 16 6 H 0.44 4.85 6.95 -92.71 -0.64 4.21 16 7 C 0.17 4.87 5.73 40.56 0.23 5.10 16 8 C 0.51 17.51 6.78 86.85 0.59 18.10 16 9 O -0.47 -22.16 10.68 -3.75 -0.04 -22.20 16 10 N -0.60 -14.83 2.97 -797.32 -2.36 -17.19 16 11 C 0.08 1.04 5.04 86.51 0.44 1.47 16 12 C -0.13 -1.36 6.10 30.82 0.19 -1.17 16 13 C -0.11 -1.33 5.88 30.62 0.18 -1.15 16 14 C -0.12 -2.38 5.36 30.67 0.16 -2.21 16 15 C 0.15 4.13 2.92 44.97 0.13 4.26 16 16 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 17 C 0.15 6.22 4.87 86.38 0.42 6.64 16 18 N -0.70 -36.13 3.24 -343.45 -1.11 -37.24 16 19 C -0.21 -12.63 9.70 84.03 0.82 -11.82 16 20 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 21 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 22 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 23 Si 0.96 49.31 29.55 68.60 2.03 51.34 16 24 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 25 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 27 C -0.26 -9.41 9.55 22.63 0.22 -9.20 16 28 C 0.38 14.59 6.78 23.93 0.16 14.75 16 29 O -0.57 -27.43 17.71 8.96 0.16 -27.27 16 30 H 0.08 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 32 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.23 0.88 6.21 -2.91 -0.02 0.86 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 1.00 5.05 -2.38 -0.01 0.98 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 43 H 0.02 1.00 6.29 -2.38 -0.01 0.99 16 44 H 0.37 19.78 7.10 -92.71 -0.66 19.12 16 45 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 46 H 0.13 5.48 8.03 -2.91 -0.02 5.45 16 Total: -1.00 -94.60 366.08 3.29 -91.32 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.27 Total: 19.02 kcal Atomic # 6 Polarization: 16.14 SS G_CDS: 6.12 Total: 22.26 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -3.89 Total: -125.08 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: -0.69 Total: -58.86 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.03 Total: 51.34 kcal Total: -94.60 3.29 -91.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674387026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.795 kcal (2) G-P(sol) polarization free energy of solvation -94.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds