Wall clock time and date at job start Tue Mar 31 2020 18:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46508 * 119.99700 * 2 1 4 4 C 1.34781 * 120.00465 * 179.97438 * 2 1 3 5 5 O 1.21536 * 119.99653 * 5.08840 * 4 2 1 6 6 C 1.47950 * 119.99958 * 185.08880 * 4 2 1 7 7 C 1.39211 * 120.19616 * 301.51516 * 6 4 2 8 8 C 1.38211 * 119.99137 * 180.02562 * 7 6 4 9 9 C 1.38368 * 120.40462 * 0.02562 * 8 7 6 10 10 C 1.38215 * 120.39680 * 0.02562 * 9 8 7 11 11 C 1.39226 * 119.98978 * 359.67763 * 10 9 8 12 12 C 1.47951 * 120.19413 * 180.29690 * 11 10 9 13 13 O 1.21538 * 119.99483 * 173.91043 * 12 11 10 14 14 N 1.34771 * 120.00204 * 353.91801 * 12 11 10 15 15 C 1.46500 * 119.99995 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47110 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.46851 * 294.99925 * 16 15 14 18 18 C 1.53000 * 109.46925 * 174.99973 * 16 15 14 19 19 O 1.42897 * 109.47326 * 304.99535 * 18 16 15 20 20 N 1.46493 * 109.47142 * 54.99906 * 16 15 14 21 21 C 1.36946 * 119.99944 * 205.00158 * 20 16 15 22 22 H 1.07996 * 119.99850 * 359.97438 * 21 20 16 23 23 C 1.38815 * 119.99785 * 179.97438 * 21 20 16 24 24 N 1.31623 * 119.99760 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00191 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47419 * 90.00039 * 25 23 21 27 27 H 1.48500 * 109.46985 * 210.00028 * 25 23 21 28 28 H 1.48498 * 109.47379 * 329.99999 * 25 23 21 29 29 H 1.08998 * 109.47169 * 90.00548 * 1 2 3 30 30 H 1.08990 * 109.47514 * 330.00060 * 1 2 3 31 31 H 1.09008 * 109.46728 * 210.00250 * 1 2 3 32 32 H 1.08996 * 109.47126 * 356.41560 * 3 2 1 33 33 H 1.09005 * 109.47088 * 116.41813 * 3 2 1 34 34 H 1.09002 * 109.46619 * 236.41469 * 3 2 1 35 35 H 1.08000 * 120.00670 * 359.97438 * 7 6 4 36 36 H 1.08000 * 119.80103 * 179.97438 * 8 7 6 37 37 H 1.07997 * 119.80671 * 180.02562 * 9 8 7 38 38 H 1.07997 * 120.00688 * 179.97438 * 10 9 8 39 39 H 0.96995 * 120.00071 * 359.97438 * 14 12 11 40 40 H 1.08999 * 109.46843 * 299.99701 * 15 14 12 41 41 H 1.09001 * 109.47525 * 59.99547 * 15 14 12 42 42 H 1.08997 * 109.47295 * 64.99918 * 18 16 15 43 43 H 1.09003 * 109.46927 * 184.99944 * 18 16 15 44 44 H 0.96702 * 114.00636 * 180.02562 * 19 18 16 45 45 H 0.97001 * 120.00649 * 25.00302 * 20 16 15 46 46 H 0.96999 * 120.00074 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5349 -2.2177 -0.0924 6 6 3.6141 -1.1695 0.1142 7 6 4.3898 -0.4973 -0.8261 8 6 5.7676 -0.5027 -0.7162 9 6 6.3844 -1.1739 0.3247 10 6 5.6301 -1.8476 1.2668 11 6 4.2409 -1.8478 1.1755 12 6 3.4289 -2.5620 2.1852 13 8 2.2172 -2.4688 2.1669 14 7 4.0327 -3.3157 3.1252 15 6 3.2286 -4.0224 4.1253 16 6 4.1522 -4.7987 5.0663 17 1 4.6679 -5.5793 4.5069 18 6 3.3234 -5.4350 6.1839 19 8 2.5572 -4.4247 6.8430 20 7 5.1368 -3.8837 5.6488 21 6 6.3412 -4.3640 6.0894 22 1 6.5649 -5.4174 6.0077 23 6 7.2744 -3.4969 6.6409 24 7 8.4318 -3.9586 7.0648 25 14 6.8876 -1.6748 6.7814 26 1 6.2346 -1.4066 8.0879 27 1 8.1466 -0.8929 6.6876 28 1 5.9742 -1.2763 5.6804 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 0.8899 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.4908 2.0963 -0.0642 33 1 2.7751 1.3549 0.9204 34 1 2.8714 1.2992 -0.8562 35 1 3.9153 0.0278 -1.6419 36 1 6.3664 0.0196 -1.4477 37 1 7.4616 -1.1715 0.4016 38 1 6.1181 -2.3698 2.0765 39 1 4.9997 -3.3902 3.1395 40 1 2.6472 -3.3012 4.6996 41 1 2.5539 -4.7167 3.6245 42 1 2.6518 -6.1808 5.7588 43 1 3.9889 -5.9130 6.9027 44 1 2.0064 -4.7570 7.5651 45 1 4.9357 -2.9376 5.7225 46 1 9.0838 -3.3527 7.4505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676598427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:04 Heat of formation + Delta-G solvation = -60.300177 kcal Electronic energy + Delta-G solvation = -29660.021396 eV Core-core repulsion = 25550.952850 eV Total energy + Delta-G solvation = -4109.068546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71595 -39.08851 -38.13016 -37.17277 -35.49672 -35.00241 -33.62252 -31.92263 -31.57538 -31.07486 -28.84622 -28.12519 -26.52336 -25.54777 -23.64886 -23.25166 -23.03790 -20.41570 -20.23195 -19.63935 -18.16637 -17.56359 -17.05463 -16.88232 -16.39589 -16.05083 -15.64105 -15.35442 -15.06598 -14.80053 -14.60586 -14.40819 -14.11208 -13.61844 -13.55070 -13.34190 -13.07562 -13.02567 -12.85099 -12.82885 -12.66238 -12.51326 -12.30713 -12.11280 -12.04914 -11.58316 -11.53210 -11.01172 -10.88583 -10.70791 -10.15090 -9.89567 -9.67875 -9.60183 -9.44726 -9.22090 -9.12443 -9.02730 -8.72625 -8.62165 -7.37826 -5.86009 -3.22327 0.63338 0.96430 2.70168 2.88501 3.09552 3.32518 3.38803 3.40258 3.43668 3.79727 4.31875 4.52385 4.57874 4.67443 4.80044 4.82273 4.88766 5.10017 5.11392 5.18724 5.21506 5.21768 5.35569 5.43561 5.44473 5.47818 5.51065 5.64845 5.76554 5.83016 5.92204 5.94385 6.02197 6.04813 6.18087 6.25912 6.38204 6.38566 6.56963 6.62038 6.81402 7.25693 7.83358 7.88161 8.11191 8.21850 8.32994 8.50888 9.11013 9.83595 10.04123 11.31649 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.003826 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.916629 B = 7316.857040 C = 8597.117412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.623 5.623 3 C 0.078 3.922 4 C 0.570 3.430 5 O -0.501 6.501 6 C -0.073 4.073 7 C -0.105 4.105 8 C -0.101 4.101 9 C -0.107 4.107 10 C -0.086 4.086 11 C -0.089 4.089 12 C 0.543 3.457 13 O -0.519 6.519 14 N -0.711 5.711 15 C 0.118 3.882 16 C 0.171 3.829 17 H 0.075 0.925 18 C 0.060 3.940 19 O -0.565 6.565 20 N -0.739 5.739 21 C -0.250 4.250 22 H 0.091 0.909 23 C 0.011 3.989 24 N -0.930 5.930 25 Si 0.882 3.118 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.407 0.593 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.366 0.634 45 H 0.366 0.634 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.477 9.142 -15.875 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.358 5.358 3 C -0.065 4.065 4 C 0.357 3.643 5 O -0.374 6.374 6 C -0.077 4.077 7 C -0.123 4.123 8 C -0.120 4.120 9 C -0.125 4.125 10 C -0.105 4.105 11 C -0.093 4.093 12 C 0.329 3.671 13 O -0.396 6.396 14 N -0.364 5.364 15 C -0.006 4.006 16 C 0.061 3.939 17 H 0.093 0.907 18 C -0.021 4.021 19 O -0.369 6.369 20 N -0.382 5.382 21 C -0.380 4.380 22 H 0.109 0.891 23 C -0.186 4.186 24 N -0.577 5.577 25 Si 0.713 3.287 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.244 0.756 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.211 0.789 45 H 0.199 0.801 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.182 8.844 -16.298 21.155 hybrid contribution 0.209 0.962 0.825 1.284 sum -9.973 9.806 -15.473 20.857 Atomic orbital electron populations 1.21607 0.78866 1.03282 1.01331 1.47537 1.06976 1.05941 1.75365 1.21893 0.97324 0.85259 1.02038 1.18005 0.86600 0.83535 0.76193 1.90784 1.68940 1.30824 1.46834 1.19852 0.93597 0.98389 0.95857 1.21195 0.93941 0.98646 0.98523 1.21271 0.94163 0.98495 0.98026 1.21331 1.00712 0.96443 0.94025 1.21517 0.92247 0.97675 0.99017 1.20034 0.93791 0.99533 0.95918 1.18196 0.87661 0.79844 0.81402 1.90830 1.13262 1.62660 1.72882 1.45892 1.11437 1.48962 1.30093 1.21606 0.93709 0.96353 0.88978 1.20582 0.89100 0.93182 0.91073 0.90715 1.22980 0.93189 0.89821 0.96139 1.86517 1.61863 1.36904 1.51592 1.42740 1.15444 1.05844 1.74201 1.19064 0.90090 0.95382 1.33455 0.89110 1.24631 0.96066 0.97418 1.00444 1.69701 1.07291 1.34298 1.46451 0.86592 0.76929 0.86873 0.78342 1.21027 1.21803 1.20283 0.93080 0.91464 0.90324 0.90511 0.92244 0.91811 0.84977 0.84973 0.84682 0.84256 0.75624 0.90597 0.91507 0.95041 0.92737 0.78862 0.80093 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 10.36 59.84 0.62 1.60 16 2 N -0.62 -7.75 3.27 -190.60 -0.62 -8.37 16 3 C 0.08 0.66 9.46 59.85 0.57 1.23 16 4 C 0.57 9.11 5.61 -12.28 -0.07 9.05 16 5 O -0.50 -10.02 14.70 -18.12 -0.27 -10.28 16 6 C -0.07 -1.03 5.02 -104.63 -0.53 -1.56 16 7 C -0.10 -1.07 8.19 -39.23 -0.32 -1.39 16 8 C -0.10 -0.89 10.03 -39.54 -0.40 -1.29 16 9 C -0.11 -1.09 10.03 -39.54 -0.40 -1.49 16 10 C -0.09 -1.12 9.52 -39.22 -0.37 -1.49 16 11 C -0.09 -1.38 5.90 -104.63 -0.62 -1.99 16 12 C 0.54 9.99 7.69 -12.28 -0.09 9.89 16 13 O -0.52 -11.06 13.16 -18.12 -0.24 -11.30 16 14 N -0.71 -12.45 5.34 -61.22 -0.33 -12.77 16 15 C 0.12 2.10 5.12 -4.04 -0.02 2.08 16 16 C 0.17 3.17 2.84 -67.93 -0.19 2.98 16 17 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 18 C 0.06 1.01 6.86 37.16 0.25 1.26 16 19 O -0.57 -9.62 12.64 -35.23 -0.45 -10.07 16 20 N -0.74 -16.56 4.31 -53.43 -0.23 -16.79 16 21 C -0.25 -6.60 10.41 -15.05 -0.16 -6.76 16 22 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 24 N -0.93 -27.99 13.97 55.49 0.78 -27.21 16 25 Si 0.88 21.64 27.73 -169.99 -4.71 16.93 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.54 7.95 -51.93 -0.41 0.13 16 31 H 0.08 1.05 7.50 -51.92 -0.39 0.66 16 32 H 0.08 0.46 7.82 -51.93 -0.41 0.05 16 33 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.06 0.43 5.65 -51.93 -0.29 0.13 16 35 H 0.13 1.01 6.69 -52.49 -0.35 0.66 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.14 1.79 6.45 -52.49 -0.34 1.45 16 39 H 0.41 6.85 6.21 -40.82 -0.25 6.59 16 40 H 0.08 1.49 7.40 -51.93 -0.38 1.11 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.37 4.45 9.12 45.56 0.42 4.87 16 45 H 0.37 8.52 5.66 -40.82 -0.23 8.29 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -37.03 380.08 -7.77 -44.81 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -5.61 Total: 17.02 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -1.82 Total: 12.32 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.41 Total: -65.15 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.95 Total: -31.65 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.03 -7.77 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676598427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.494 kcal (2) G-P(sol) polarization free energy of solvation -37.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds