Wall clock time and date at job start Tue Mar 31 2020 18:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99809 * 2 1 4 4 C 1.53001 * 109.46885 * 269.99730 * 3 2 1 5 5 H 1.08997 * 109.47162 * 60.00673 * 4 3 2 6 6 O 1.42895 * 109.47324 * 300.00069 * 4 3 2 7 7 C 1.53001 * 109.46945 * 180.02562 * 4 3 2 8 8 N 1.46503 * 109.47041 * 185.00060 * 7 4 3 9 9 C 1.36940 * 119.99639 * 179.72786 * 8 7 4 10 10 H 1.08000 * 120.00193 * 0.27573 * 9 8 7 11 11 C 1.38806 * 119.99574 * 180.27606 * 9 8 7 12 12 N 1.31620 * 120.00480 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46718 * 89.99891 * 13 11 9 15 15 H 1.48500 * 109.47367 * 210.00075 * 13 11 9 16 16 H 1.48500 * 109.46864 * 330.00358 * 13 11 9 17 17 C 1.34781 * 119.99821 * 179.97438 * 2 1 3 18 18 O 1.21515 * 119.99712 * 175.88003 * 17 2 1 19 19 C 1.48164 * 119.99851 * 355.87952 * 17 2 1 20 20 C 1.39607 * 120.88536 * 219.34665 * 19 17 2 21 21 C 1.38850 * 118.94836 * 179.78106 * 20 19 17 22 22 O 1.35682 * 119.62908 * 180.22752 * 21 20 19 23 23 N 1.32207 * 120.75569 * 0.50731 * 21 20 19 24 24 C 1.31887 * 121.96477 * 359.74038 * 23 21 20 25 25 C 1.50704 * 119.50752 * 180.02562 * 24 23 21 26 26 C 1.53003 * 117.49306 * 163.60198 * 25 24 23 27 27 C 1.53002 * 60.00030 * 252.51462 * 26 25 24 28 28 C 1.38012 * 120.97998 * 0.02562 * 24 23 21 29 29 H 1.08995 * 109.47325 * 94.69998 * 1 2 3 30 30 H 1.08996 * 109.47233 * 214.70797 * 1 2 3 31 31 H 1.08997 * 109.47165 * 334.70176 * 1 2 3 32 32 H 1.08997 * 109.46671 * 150.00102 * 3 2 1 33 33 H 1.08998 * 109.46997 * 30.00031 * 3 2 1 34 34 H 0.96699 * 114.00272 * 300.00147 * 6 4 3 35 35 H 1.09007 * 109.47019 * 65.00517 * 7 4 3 36 36 H 1.08998 * 109.47047 * 305.00410 * 7 4 3 37 37 H 0.96994 * 119.99636 * 0.02562 * 8 7 4 38 38 H 0.96998 * 120.00720 * 180.02562 * 12 11 9 39 39 H 1.07998 * 120.53332 * 0.02562 * 20 19 17 40 40 H 0.96701 * 114.00167 * 270.27948 * 22 21 20 41 41 H 1.08993 * 115.55692 * 309.31254 * 25 24 23 42 42 H 1.09000 * 117.50440 * 359.97438 * 26 25 24 43 43 H 1.09002 * 117.49512 * 145.02620 * 26 25 24 44 44 H 1.09005 * 117.49650 * 252.51749 * 27 26 25 45 45 H 1.08996 * 117.52054 * 107.48248 * 27 26 25 46 46 H 1.07998 * 120.43742 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2180 3.0351 -1.4425 8 7 3.3580 3.5182 -2.8185 9 6 4.0078 4.6976 -3.0673 10 1 4.4211 5.2694 -2.2495 11 6 4.1354 5.1582 -4.3705 12 7 3.6314 4.4617 -5.3670 13 14 5.0213 6.7674 -4.7098 14 1 6.4661 6.5010 -4.9261 15 1 4.4477 7.4018 -5.9239 16 1 4.8543 7.6787 -3.5492 17 6 2.1389 -1.1673 0.0005 18 8 3.3517 -1.1686 -0.0751 19 6 1.4009 -2.4487 0.0933 20 6 1.8925 -3.5047 0.8627 21 6 1.1657 -4.6862 0.9249 22 8 1.6284 -5.7198 1.6723 23 7 0.0307 -4.8175 0.2598 24 6 -0.4614 -3.8434 -0.4807 25 6 -1.7605 -4.0531 -1.2152 26 6 -2.4852 -2.8108 -1.7372 27 6 -3.0430 -3.5725 -0.5332 28 6 0.1957 -2.6350 -0.5929 29 1 -0.3634 -0.0842 -1.0241 30 1 -0.3633 -0.8448 0.5851 31 1 -0.3633 0.9291 0.4391 32 1 3.1499 1.1384 0.5138 33 1 1.6084 2.0284 0.5138 34 1 4.0873 0.5460 -1.7126 35 1 4.2064 2.8836 -1.0084 36 1 2.6710 3.7708 -0.8530 37 1 2.9865 3.0048 -3.5529 38 1 3.7209 4.7833 -6.2777 39 1 2.8214 -3.4031 1.4042 40 1 2.2076 -6.3256 1.1900 41 1 -1.8197 -4.9604 -1.8163 42 1 -2.0227 -1.8419 -1.5490 43 1 -3.0213 -2.9007 -2.6820 44 1 -3.9461 -4.1636 -0.6860 45 1 -2.9472 -3.1052 0.4468 46 1 -0.2154 -1.8431 -1.2015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677084857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:37 Heat of formation + Delta-G solvation = -33.621167 kcal Electronic energy + Delta-G solvation = -28793.842853 eV Core-core repulsion = 24685.931196 eV Total energy + Delta-G solvation = -4107.911657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36606 -39.82661 -38.24671 -37.37989 -36.49839 -35.51954 -34.00948 -33.06495 -31.31302 -30.55321 -29.39558 -27.25784 -26.14895 -24.93198 -24.15401 -22.90660 -22.56071 -21.67461 -21.13102 -19.82631 -18.68080 -17.76109 -17.17040 -17.01279 -16.79214 -16.40935 -16.05195 -15.86587 -15.63035 -15.10953 -14.85674 -14.64078 -14.39212 -13.91961 -13.63616 -13.47766 -13.43015 -13.01040 -12.84006 -12.63968 -12.42702 -12.24136 -12.18617 -12.10404 -11.78662 -11.54436 -11.11912 -10.94813 -10.87145 -10.81736 -10.73975 -10.46853 -10.16260 -10.12143 -9.81967 -9.73777 -9.59317 -9.17187 -8.89666 -8.65078 -6.92194 -5.74890 -3.04462 0.41246 0.53742 2.43945 2.64671 2.97040 3.30389 3.43854 3.46881 3.48500 3.50412 3.95662 4.01493 4.39877 4.45360 4.54840 4.58270 4.62417 4.69625 4.74837 4.86494 4.92067 4.94347 5.14634 5.15961 5.23483 5.25668 5.32753 5.38012 5.47200 5.52209 5.61137 5.61849 5.68276 5.68630 5.71795 5.95372 5.98287 6.18710 6.32521 6.50895 6.71982 7.05634 7.09079 7.49103 7.68761 7.89386 8.18567 8.43323 9.54629 10.12352 10.47941 11.47508 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.002360 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.059061 B =11863.763747 C =12704.448486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.598 5.598 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.096 0.904 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.564 3.436 18 O -0.516 6.516 19 C -0.057 4.057 20 C -0.141 4.141 21 C 0.314 3.686 22 O -0.479 6.479 23 N -0.486 5.486 24 C 0.182 3.818 25 C -0.112 4.112 26 C -0.171 4.171 27 C -0.159 4.159 28 C -0.154 4.154 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.375 0.625 35 H 0.021 0.979 36 H 0.025 0.975 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.150 0.850 40 H 0.403 0.597 41 H 0.126 0.874 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 -18.888 14.140 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.330 5.330 3 C -0.038 4.038 4 C 0.025 3.975 5 H 0.114 0.886 6 O -0.353 6.353 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.351 3.649 18 O -0.391 6.391 19 C -0.068 4.068 20 C -0.163 4.163 21 C 0.135 3.865 22 O -0.286 6.286 23 N -0.206 5.206 24 C 0.044 3.956 25 C -0.131 4.131 26 C -0.208 4.208 27 C -0.197 4.197 28 C -0.174 4.174 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.223 0.777 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.223 0.777 38 H 0.065 0.935 39 H 0.168 0.832 40 H 0.261 0.739 41 H 0.143 0.857 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.549 -19.276 14.287 27.555 hybrid contribution 1.542 1.244 -0.471 2.037 sum -12.007 -18.032 13.816 25.694 Atomic orbital electron populations 1.22195 0.79585 1.03657 1.02028 1.47541 1.06926 1.05794 1.72787 1.22390 0.98284 0.83964 0.99168 1.22490 0.95855 0.88424 0.90720 0.88567 1.86542 1.33163 1.58820 1.56752 1.21238 0.96798 0.92418 0.89809 1.42243 1.68212 1.25151 1.01393 1.19216 1.28313 0.97632 0.92218 0.91266 1.24761 1.01494 0.99040 0.95629 1.69678 1.50251 1.39252 0.98652 0.86185 0.79332 0.83254 0.77364 1.21687 1.21742 1.20783 1.18020 0.86985 0.83005 0.76886 1.90775 1.13179 1.86695 1.48478 1.20214 0.94559 0.94813 0.97174 1.22160 1.01245 0.92839 1.00019 1.18886 0.89224 0.87913 0.90479 1.84789 1.68107 1.38936 1.36788 1.66689 1.13024 1.33958 1.06901 1.19979 0.94795 0.88040 0.92737 1.20799 0.88901 1.00446 1.02941 1.23158 1.03008 0.95561 0.99057 1.22994 0.96034 1.03198 0.97470 1.22470 0.94721 0.99411 1.00804 0.91853 0.90928 0.90189 0.89297 0.89184 0.77743 0.96088 0.95778 0.77745 0.93491 0.83200 0.73884 0.85658 0.88141 0.87515 0.87905 0.88573 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 8.95 59.85 0.54 1.07 16 2 N -0.60 -6.79 2.83 -182.58 -0.52 -7.31 16 3 C 0.08 1.04 5.18 -4.04 -0.02 1.02 16 4 C 0.09 1.39 3.27 -26.73 -0.09 1.30 16 5 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 6 O -0.55 -10.19 12.01 -48.21 -0.58 -10.77 16 7 C 0.13 2.48 5.90 -4.04 -0.02 2.46 16 8 N -0.73 -18.74 5.55 -59.90 -0.33 -19.07 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 13 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.56 7.46 6.96 -12.18 -0.08 7.38 16 18 O -0.52 -8.39 15.08 -7.63 -0.12 -8.50 16 19 C -0.06 -0.64 5.22 -104.68 -0.55 -1.18 16 20 C -0.14 -1.51 9.69 -38.84 -0.38 -1.88 16 21 C 0.31 3.31 7.74 -17.16 -0.13 3.18 16 22 O -0.48 -4.21 13.56 -18.75 -0.25 -4.47 16 23 N -0.49 -5.43 10.27 -9.60 -0.10 -5.53 16 24 C 0.18 1.78 6.45 -82.65 -0.53 1.24 16 25 C -0.11 -0.84 6.22 -91.77 -0.57 -1.41 16 26 C -0.17 -0.98 9.79 -26.73 -0.26 -1.24 16 27 C -0.16 -0.95 10.23 -26.73 -0.27 -1.23 16 28 C -0.15 -1.48 6.95 -39.03 -0.27 -1.75 16 29 H 0.06 0.46 6.90 -51.93 -0.36 0.10 16 30 H 0.07 0.49 5.92 -51.93 -0.31 0.19 16 31 H 0.08 0.49 7.84 -51.93 -0.41 0.08 16 32 H 0.09 1.15 7.48 -51.93 -0.39 0.76 16 33 H 0.09 0.88 7.86 -51.93 -0.41 0.48 16 34 H 0.37 6.61 8.33 45.56 0.38 6.99 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.82 7.67 -40.82 -0.31 10.50 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.40 1.56 9.06 45.56 0.41 1.97 16 41 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.53 6.39 -51.93 -0.33 0.20 16 43 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.15 1.26 3.66 -52.49 -0.19 1.07 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -36.62 383.56 -8.15 -44.77 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -4.84 Total: 14.08 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.89 Total: 1.42 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.22 Total: -59.90 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.95 Total: -23.74 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.62 -8.15 -44.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677084857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.145 kcal (2) G-P(sol) polarization free energy of solvation -36.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds