Wall clock time and date at job start Tue Mar 31 2020 18:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 119.99809 * 2 1 4 4 C 1.53001 * 109.46885 * 269.99730 * 3 2 1 5 5 H 1.08997 * 109.47162 * 60.00673 * 4 3 2 6 6 O 1.42895 * 109.47324 * 300.00069 * 4 3 2 7 7 C 1.53001 * 109.46945 * 180.02562 * 4 3 2 8 8 N 1.46503 * 109.47041 * 185.00060 * 7 4 3 9 9 C 1.36940 * 119.99639 * 179.72786 * 8 7 4 10 10 H 1.08000 * 120.00193 * 0.27573 * 9 8 7 11 11 C 1.38806 * 119.99574 * 180.27606 * 9 8 7 12 12 N 1.31620 * 120.00480 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00073 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46718 * 89.99891 * 13 11 9 15 15 H 1.48500 * 109.47367 * 210.00075 * 13 11 9 16 16 H 1.48500 * 109.46864 * 330.00358 * 13 11 9 17 17 C 1.34781 * 119.99821 * 179.97438 * 2 1 3 18 18 O 1.21515 * 119.99712 * 175.88003 * 17 2 1 19 19 C 1.48164 * 119.99851 * 355.87952 * 17 2 1 20 20 C 1.39607 * 120.88536 * 219.34665 * 19 17 2 21 21 C 1.38850 * 118.94836 * 179.78106 * 20 19 17 22 22 O 1.35682 * 119.62908 * 180.22752 * 21 20 19 23 23 N 1.32207 * 120.75569 * 0.50731 * 21 20 19 24 24 C 1.31887 * 121.96477 * 359.74038 * 23 21 20 25 25 C 1.50704 * 119.50752 * 180.02562 * 24 23 21 26 26 C 1.53003 * 117.49306 * 163.60198 * 25 24 23 27 27 C 1.53002 * 60.00030 * 252.51462 * 26 25 24 28 28 C 1.38012 * 120.97998 * 0.02562 * 24 23 21 29 29 H 1.08995 * 109.47325 * 94.69998 * 1 2 3 30 30 H 1.08996 * 109.47233 * 214.70797 * 1 2 3 31 31 H 1.08997 * 109.47165 * 334.70176 * 1 2 3 32 32 H 1.08997 * 109.46671 * 150.00102 * 3 2 1 33 33 H 1.08998 * 109.46997 * 30.00031 * 3 2 1 34 34 H 0.96699 * 114.00272 * 300.00147 * 6 4 3 35 35 H 1.09007 * 109.47019 * 65.00517 * 7 4 3 36 36 H 1.08998 * 109.47047 * 305.00410 * 7 4 3 37 37 H 0.96994 * 119.99636 * 0.02562 * 8 7 4 38 38 H 0.96998 * 120.00720 * 180.02562 * 12 11 9 39 39 H 1.07998 * 120.53332 * 0.02562 * 20 19 17 40 40 H 0.96701 * 114.00167 * 270.27948 * 22 21 20 41 41 H 1.08993 * 115.55692 * 309.31254 * 25 24 23 42 42 H 1.09000 * 117.50440 * 359.97438 * 26 25 24 43 43 H 1.09002 * 117.49512 * 145.02620 * 26 25 24 44 44 H 1.09005 * 117.49650 * 252.51749 * 27 26 25 45 45 H 1.08996 * 117.52054 * 107.48248 * 27 26 25 46 46 H 1.07998 * 120.43742 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2180 3.0351 -1.4425 8 7 3.3580 3.5182 -2.8185 9 6 4.0078 4.6976 -3.0673 10 1 4.4211 5.2694 -2.2495 11 6 4.1354 5.1582 -4.3705 12 7 3.6314 4.4617 -5.3670 13 14 5.0213 6.7674 -4.7098 14 1 6.4661 6.5010 -4.9261 15 1 4.4477 7.4018 -5.9239 16 1 4.8543 7.6787 -3.5492 17 6 2.1389 -1.1673 0.0005 18 8 3.3517 -1.1686 -0.0751 19 6 1.4009 -2.4487 0.0933 20 6 1.8925 -3.5047 0.8627 21 6 1.1657 -4.6862 0.9249 22 8 1.6284 -5.7198 1.6723 23 7 0.0307 -4.8175 0.2598 24 6 -0.4614 -3.8434 -0.4807 25 6 -1.7605 -4.0531 -1.2152 26 6 -2.4852 -2.8108 -1.7372 27 6 -3.0430 -3.5725 -0.5332 28 6 0.1957 -2.6350 -0.5929 29 1 -0.3634 -0.0842 -1.0241 30 1 -0.3633 -0.8448 0.5851 31 1 -0.3633 0.9291 0.4391 32 1 3.1499 1.1384 0.5138 33 1 1.6084 2.0284 0.5138 34 1 4.0873 0.5460 -1.7126 35 1 4.2064 2.8836 -1.0084 36 1 2.6710 3.7708 -0.8530 37 1 2.9865 3.0048 -3.5529 38 1 3.7209 4.7833 -6.2777 39 1 2.8214 -3.4031 1.4042 40 1 2.2076 -6.3256 1.1900 41 1 -1.8197 -4.9604 -1.8163 42 1 -2.0227 -1.8419 -1.5490 43 1 -3.0213 -2.9007 -2.6820 44 1 -3.9461 -4.1636 -0.6860 45 1 -2.9472 -3.1052 0.4468 46 1 -0.2154 -1.8431 -1.2015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677084857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:36 Heat of formation + Delta-G solvation = -63.943405 kcal Electronic energy + Delta-G solvation = -28795.157724 eV Core-core repulsion = 24685.931196 eV Total energy + Delta-G solvation = -4109.226528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17265 -40.76934 -38.86851 -38.70698 -37.15113 -36.59229 -35.88462 -33.92691 -33.18260 -31.40483 -30.70455 -28.14338 -27.47569 -25.87866 -25.21084 -24.27409 -23.14244 -22.77602 -22.25752 -20.63974 -19.45128 -19.23396 -18.59252 -17.92156 -17.68884 -17.43061 -17.04391 -16.63654 -16.55987 -16.39026 -16.20183 -15.87541 -15.40455 -15.19132 -15.00084 -14.53952 -14.33235 -14.21562 -14.05988 -13.74001 -13.53037 -13.22962 -12.97909 -12.90697 -12.83647 -12.76892 -12.57812 -12.25499 -12.17252 -12.04928 -11.82451 -11.69303 -11.47914 -11.33764 -11.10579 -10.97571 -10.92711 -10.48946 -9.89645 -9.67686 -9.01441 -7.94953 -5.24804 -0.41404 -0.21016 1.46545 1.49130 1.52618 1.57358 1.75245 2.26522 2.54306 2.56361 2.91652 3.22171 3.29678 3.36839 3.51708 3.73489 3.75415 3.79783 3.97841 4.01022 4.07348 4.13325 4.15012 4.24039 4.26466 4.44518 4.47287 4.52108 4.58610 4.62872 4.72137 4.76669 4.84701 4.87292 4.92838 5.05034 5.18627 5.23777 5.26721 5.28622 5.36943 5.47557 6.16986 6.25936 6.49638 6.76403 6.79097 6.93902 7.32417 8.08715 8.31207 9.28480 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018036 B = 0.002360 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.059061 B =11863.763747 C =12704.448486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.594 5.594 3 C 0.095 3.905 4 C 0.095 3.905 5 H 0.094 0.906 6 O -0.567 6.567 7 C 0.123 3.877 8 N -0.742 5.742 9 C -0.247 4.247 10 H 0.078 0.922 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.289 1.289 15 H -0.294 1.294 16 H -0.266 1.266 17 C 0.558 3.442 18 O -0.556 6.556 19 C -0.066 4.066 20 C -0.149 4.149 21 C 0.314 3.686 22 O -0.486 6.486 23 N -0.505 5.505 24 C 0.181 3.819 25 C -0.131 4.131 26 C -0.162 4.162 27 C -0.153 4.153 28 C -0.149 4.149 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.376 0.624 35 H 0.021 0.979 36 H 0.043 0.957 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.150 0.850 40 H 0.423 0.577 41 H 0.127 0.873 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.500 -18.381 15.243 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.325 5.325 3 C -0.029 4.029 4 C 0.035 3.965 5 H 0.112 0.888 6 O -0.373 6.373 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.379 4.379 10 H 0.096 0.904 11 C -0.270 4.270 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.216 1.216 15 H -0.221 1.221 16 H -0.191 1.191 17 C 0.346 3.654 18 O -0.435 6.435 19 C -0.077 4.077 20 C -0.171 4.171 21 C 0.135 3.865 22 O -0.296 6.296 23 N -0.224 5.224 24 C 0.044 3.956 25 C -0.150 4.150 26 C -0.199 4.199 27 C -0.190 4.190 28 C -0.169 4.169 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.142 0.858 34 H 0.224 0.776 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.206 0.794 38 H 0.060 0.940 39 H 0.168 0.832 40 H 0.284 0.716 41 H 0.145 0.855 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.113 0.887 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.014 -18.779 15.449 28.578 hybrid contribution 1.954 1.005 -0.748 2.321 sum -13.060 -17.774 14.701 26.507 Atomic orbital electron populations 1.22486 0.77181 1.05499 1.03085 1.47613 1.08409 1.04847 1.71647 1.22224 0.99107 0.85220 0.96307 1.22442 0.94624 0.86339 0.93121 0.88802 1.86515 1.33535 1.59390 1.57850 1.21454 0.97525 0.94545 0.86881 1.42468 1.67963 1.24557 1.03435 1.19663 1.27382 0.98307 0.92515 0.90431 1.25630 1.03066 1.02712 0.95608 1.69845 1.52268 1.41178 0.98766 0.85106 0.77719 0.79378 0.77331 1.21641 1.22096 1.19060 1.18373 0.86702 0.84032 0.76269 1.90748 1.14884 1.87351 1.50466 1.20148 0.95231 0.94174 0.98155 1.22197 1.01453 0.92996 1.00422 1.18947 0.89142 0.88209 0.90249 1.84737 1.68613 1.39007 1.37264 1.66773 1.13391 1.34700 1.07582 1.20361 0.95405 0.87672 0.92179 1.20883 0.88563 1.01643 1.03933 1.23274 1.02105 0.94988 0.99518 1.23072 0.95498 1.02932 0.97535 1.22576 0.94006 0.99862 1.00433 0.91004 0.89845 0.87848 0.89990 0.85799 0.77603 0.96104 0.93869 0.79419 0.94026 0.83181 0.71585 0.85524 0.87555 0.86365 0.86674 0.88694 0.81493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 8.95 127.77 1.14 1.89 16 2 N -0.59 -12.50 2.83 -849.84 -2.40 -14.90 16 3 C 0.09 2.14 5.18 86.38 0.45 2.59 16 4 C 0.10 2.98 3.27 30.59 0.10 3.08 16 5 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 6 O -0.57 -21.24 12.01 -136.57 -1.64 -22.88 16 7 C 0.12 4.72 5.90 86.38 0.51 5.23 16 8 N -0.74 -38.30 5.55 -343.44 -1.91 -40.20 16 9 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 10 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 11 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 12 N -0.97 -60.74 13.06 21.65 0.28 -60.46 16 13 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 14 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C 0.56 14.52 6.96 86.88 0.61 15.13 16 18 O -0.56 -18.38 15.08 8.65 0.13 -18.25 16 19 C -0.07 -1.46 5.22 -19.90 -0.10 -1.56 16 20 C -0.15 -3.18 9.69 22.75 0.22 -2.96 16 21 C 0.31 6.49 7.74 84.78 0.66 7.15 16 22 O -0.49 -8.28 13.56 -90.00 -1.22 -9.50 16 23 N -0.50 -10.92 10.27 -297.16 -3.05 -13.98 16 24 C 0.18 3.34 6.45 42.50 0.27 3.61 16 25 C -0.13 -1.77 6.22 -11.54 -0.07 -1.84 16 26 C -0.16 -1.48 9.79 30.60 0.30 -1.18 16 27 C -0.15 -1.50 10.23 30.60 0.31 -1.19 16 28 C -0.15 -2.69 6.95 22.63 0.16 -2.53 16 29 H 0.07 0.83 6.90 -2.39 -0.02 0.81 16 30 H 0.08 0.92 5.92 -2.39 -0.01 0.90 16 31 H 0.10 0.87 7.84 -2.39 -0.02 0.85 16 32 H 0.08 2.02 7.48 -2.39 -0.02 2.00 16 33 H 0.12 1.99 7.86 -2.39 -0.02 1.97 16 34 H 0.38 13.59 8.33 -74.06 -0.62 12.97 16 35 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.37 21.15 7.67 -92.71 -0.71 20.44 16 38 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 40 H 0.42 3.01 9.06 -74.06 -0.67 2.34 16 41 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.11 0.84 6.39 -2.39 -0.02 0.82 16 43 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 46 H 0.17 2.42 3.66 -2.91 -0.01 2.41 16 Total: -1.00 -79.31 383.56 -2.87 -82.18 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.94 Total: 39.22 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.86 Total: 10.24 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -7.08 Total: -129.53 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -2.73 Total: -50.62 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -79.31 -2.87 -82.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677084857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.232 kcal (2) G-P(sol) polarization free energy of solvation -79.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds