Wall clock time and date at job start Tue Mar 31 2020 18:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46896 * 111.00328 * 2 1 4 4 C 1.52999 * 109.46940 * 293.95461 * 3 2 1 5 5 N 1.46500 * 109.47426 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99900 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00390 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99342 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.46753 * 180.02562 * 8 6 5 10 10 N 1.34775 * 120.00135 * 179.97438 * 9 8 6 11 11 O 1.21276 * 119.99837 * 0.02562 * 9 8 6 12 12 C 1.46908 * 110.99855 * 123.95020 * 2 1 3 13 13 C 1.50702 * 109.46924 * 66.04639 * 12 2 1 14 14 C 1.38298 * 119.93116 * 269.72262 * 13 12 2 15 15 C 1.38101 * 120.06916 * 179.72401 * 14 13 12 16 16 C 1.38880 * 119.93007 * 0.57389 * 15 14 13 17 17 O 1.35750 * 120.06847 * 179.68280 * 16 15 14 18 18 C 1.34825 * 116.99901 * 174.49053 * 17 16 15 19 19 H 1.08004 * 120.00181 * 5.04694 * 18 17 16 20 20 C 1.38659 * 120.00045 * 185.05605 * 18 17 16 21 21 N 1.31550 * 119.99874 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99879 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47023 * 89.99976 * 22 20 18 24 24 H 1.48495 * 109.46835 * 209.99722 * 22 20 18 25 25 H 1.48493 * 109.47362 * 329.99934 * 22 20 18 26 26 C 1.38885 * 119.86093 * 359.70140 * 16 15 14 27 27 C 1.38101 * 119.93180 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47373 * 60.00288 * 1 2 3 29 29 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47266 * 300.00260 * 1 2 3 31 31 H 1.08994 * 109.47248 * 53.94966 * 3 2 1 32 32 H 1.08995 * 109.47316 * 173.95432 * 3 2 1 33 33 H 1.09006 * 109.47087 * 299.99963 * 4 3 2 34 34 H 1.08996 * 109.47687 * 59.99334 * 4 3 2 35 35 H 0.97001 * 119.99575 * 0.02562 * 5 4 3 36 36 H 1.09002 * 109.47488 * 299.99746 * 8 6 5 37 37 H 1.08995 * 109.47443 * 60.00230 * 8 6 5 38 38 H 0.97006 * 119.99521 * 0.02562 * 10 9 8 39 39 H 0.96993 * 120.00467 * 180.02562 * 10 9 8 40 40 H 1.08999 * 109.46650 * 186.04005 * 12 2 1 41 41 H 1.08994 * 109.47465 * 306.04673 * 12 2 1 42 42 H 1.07999 * 119.96453 * 359.97438 * 14 13 12 43 43 H 1.08005 * 120.03385 * 180.27530 * 15 14 13 44 44 H 0.96996 * 119.99854 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.03044 * 179.97438 * 26 16 15 46 46 H 1.07999 * 119.96690 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1560 3.4252 -1.3181 6 6 1.9554 4.2240 -2.3850 7 8 1.3403 3.8106 -3.3450 8 6 2.4955 5.6309 -2.3850 9 6 2.1368 6.3066 -3.6835 10 7 2.5178 7.5796 -3.9084 11 8 1.5045 5.7051 -4.5256 12 6 1.9954 -0.7660 1.1377 13 6 1.6368 -2.2204 0.9730 14 6 0.4528 -2.7032 1.4999 15 6 0.1187 -4.0343 1.3457 16 6 0.9787 -4.8909 0.6710 17 8 0.6561 -6.2012 0.5234 18 6 1.4773 -6.9517 -0.2383 19 1 2.3886 -6.5258 -0.6314 20 6 1.1518 -8.2704 -0.5171 21 7 0.0419 -8.7893 -0.0381 22 14 2.2892 -9.3100 -1.5731 23 1 3.2788 -9.9980 -0.7055 24 1 1.4916 -10.3211 -2.3124 25 1 3.0015 -8.4373 -2.5407 26 6 2.1698 -4.4043 0.1480 27 6 2.4955 -3.0709 0.3006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5611 1.9273 0.8308 32 1 3.0797 1.3443 0.1082 33 1 2.0658 1.5014 -2.1492 34 1 0.5472 2.0844 -1.4266 35 1 2.6482 3.7558 -0.5505 36 1 2.0608 6.1870 -1.5543 37 1 3.5797 5.6039 -2.2764 38 1 3.0233 8.0608 -3.2346 39 1 2.2867 8.0147 -4.7439 40 1 3.0796 -0.6611 1.1756 41 1 1.5611 -0.3872 2.0629 42 1 -0.2132 -2.0376 2.0290 43 1 -0.8083 -4.4097 1.7536 44 1 -0.1860 -9.7117 -0.2335 45 1 2.8408 -5.0681 -0.3768 46 1 3.4217 -2.6920 -0.1055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690931790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:07 Heat of formation + Delta-G solvation = -65.727960 kcal Electronic energy + Delta-G solvation = -27155.000809 eV Core-core repulsion = 23045.696896 eV Total energy + Delta-G solvation = -4109.303912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54562 -39.26124 -38.86697 -37.84489 -36.23966 -34.72121 -34.03312 -32.32822 -31.41471 -30.29598 -30.08983 -28.32401 -26.86606 -25.32889 -23.86762 -22.00536 -21.88360 -21.38179 -20.45337 -20.18132 -18.01085 -17.96073 -17.65067 -16.95528 -16.44859 -16.39310 -16.16793 -15.72970 -15.16226 -14.76686 -14.74480 -14.48196 -14.32814 -13.83962 -13.78823 -13.63334 -13.49806 -13.44123 -13.21132 -12.69732 -12.55862 -12.44158 -12.04176 -11.75488 -11.60730 -11.43902 -11.38925 -11.16643 -10.74792 -10.66251 -10.57882 -10.52021 -10.41095 -10.08193 -9.77858 -9.31078 -9.28945 -8.82046 -8.35202 -8.13934 -7.16442 -6.43579 -4.02213 2.21764 2.21997 2.27552 2.45256 2.57432 3.13989 3.15801 3.20524 3.25554 3.98059 4.00907 4.19223 4.48077 4.62605 4.66589 4.67668 4.79167 4.88696 5.10623 5.18308 5.19756 5.29228 5.35549 5.53641 5.58485 5.68673 5.73851 5.79485 5.84591 5.89440 6.12206 6.15091 6.22896 6.35027 6.43665 6.70982 6.84764 6.90471 7.00012 7.01688 7.10447 7.18873 7.27769 7.42544 7.46486 7.84388 7.85746 8.01666 8.03715 9.02272 9.72235 10.74433 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.001656 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.242744 B =16899.128990 C =17688.157198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.532 5.532 3 C 0.046 3.954 4 C 0.122 3.878 5 N -0.733 5.733 6 C 0.509 3.491 7 O -0.492 6.492 8 C -0.166 4.166 9 C 0.513 3.487 10 N -0.861 5.861 11 O -0.495 6.495 12 C 0.116 3.884 13 C -0.182 4.182 14 C -0.068 4.068 15 C -0.194 4.194 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.235 4.235 27 C -0.048 4.048 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.397 0.603 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.399 0.601 39 H 0.403 0.597 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.107 0.893 43 H 0.116 0.884 44 H 0.270 0.730 45 H 0.126 0.874 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 31.289 1.787 32.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.257 5.257 3 C -0.083 4.083 4 C -0.002 4.002 5 N -0.388 5.388 6 C 0.292 3.708 7 O -0.363 6.363 8 C -0.210 4.210 9 C 0.295 3.705 10 N -0.427 5.427 11 O -0.366 6.366 12 C -0.011 4.011 13 C -0.183 4.183 14 C -0.086 4.086 15 C -0.213 4.213 16 C 0.102 3.898 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.254 4.254 27 C -0.067 4.067 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.231 0.769 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.227 0.773 39 H 0.234 0.766 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.125 0.875 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.144 0.856 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.078 29.783 0.260 30.613 hybrid contribution 0.817 0.533 0.700 1.200 sum 7.894 30.315 0.960 31.341 Atomic orbital electron populations 1.22538 0.87095 1.03478 0.99939 1.61925 1.08413 1.11039 1.44301 1.22217 1.00662 0.89786 0.95645 1.21338 0.99609 0.80703 0.98545 1.45901 1.58854 1.14445 1.19587 1.19913 0.81149 0.86688 0.83051 1.90901 1.38115 1.74406 1.32900 1.21585 1.04835 0.95747 0.98785 1.20002 0.79839 0.81987 0.88629 1.43866 1.60746 1.14714 1.23389 1.90940 1.36866 1.63223 1.45585 1.20802 0.99184 0.90958 0.90113 1.19022 0.97761 0.93807 1.07713 1.20473 0.95510 0.94200 0.98466 1.20168 1.00879 0.92820 1.07457 1.19399 0.92310 0.85343 0.92746 1.83973 1.48930 1.14309 1.60936 1.21335 1.03346 0.93106 1.28981 0.89030 1.25287 0.97123 0.96385 0.97699 1.70035 1.22544 1.14784 1.42395 0.85716 0.79067 0.79366 0.79323 1.19903 1.20257 1.19155 1.21162 0.99353 0.96289 1.08642 1.20553 0.97844 0.92594 0.95727 0.91532 0.89899 0.95983 0.94590 0.90328 0.90329 0.91264 0.76932 0.86041 0.85971 0.77314 0.76592 0.90856 0.94869 0.87521 0.86642 0.92038 0.85608 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.98 60.06 0.54 0.75 16 2 N -0.53 -6.47 4.75 -244.38 -1.16 -7.63 16 3 C 0.05 0.40 5.07 -3.83 -0.02 0.38 16 4 C 0.12 1.19 5.60 -4.04 -0.02 1.17 16 5 N -0.73 -5.28 5.56 -60.29 -0.33 -5.62 16 6 C 0.51 4.93 7.82 -10.98 -0.09 4.84 16 7 O -0.49 -7.81 14.18 -18.96 -0.27 -8.07 16 8 C -0.17 -0.77 6.19 -29.03 -0.18 -0.94 16 9 C 0.51 4.13 8.09 -10.98 -0.09 4.04 16 10 N -0.86 -2.88 8.87 31.22 0.28 -2.61 16 11 O -0.49 -7.22 15.02 -18.96 -0.28 -7.51 16 12 C 0.12 1.47 5.12 -4.97 -0.03 1.45 16 13 C -0.18 -3.01 4.89 -104.57 -0.51 -3.52 16 14 C -0.07 -1.18 7.90 -39.61 -0.31 -1.49 16 15 C -0.19 -4.07 9.99 -39.39 -0.39 -4.46 16 16 C 0.16 3.78 6.65 -39.10 -0.26 3.52 16 17 O -0.18 -5.12 9.76 0.06 0.00 -5.12 16 18 C -0.39 -11.02 9.49 30.89 0.29 -10.73 16 19 H 0.09 2.39 5.20 -52.48 -0.27 2.12 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 22 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 C -0.24 -5.13 9.17 -39.39 -0.36 -5.49 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 28 H 0.07 0.77 6.47 -51.93 -0.34 0.44 16 29 H 0.08 1.17 5.90 -51.93 -0.31 0.87 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.28 8.12 -51.93 -0.42 -0.15 16 32 H 0.08 0.60 7.93 -51.93 -0.41 0.19 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.78 6.55 -51.93 -0.34 0.44 16 35 H 0.40 1.36 8.47 -40.82 -0.35 1.02 16 36 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.40 -0.16 8.83 -40.82 -0.36 -0.52 16 39 H 0.40 1.27 8.93 -40.82 -0.36 0.91 16 40 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 41 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 42 H 0.11 1.56 8.00 -52.49 -0.42 1.14 16 43 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 46 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -39.03 385.80 -8.51 -47.54 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.38 Total: 2.96 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.91 Total: -10.76 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.46 Total: -40.54 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.55 Total: -20.70 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.03 -8.51 -47.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690931790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.188 kcal (2) G-P(sol) polarization free energy of solvation -39.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds