Wall clock time and date at job start Tue Mar 31 2020 18:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46896 * 111.00328 * 2 1 4 4 C 1.52999 * 109.46940 * 293.95461 * 3 2 1 5 5 N 1.46500 * 109.47426 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99900 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00390 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99342 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.46753 * 180.02562 * 8 6 5 10 10 N 1.34775 * 120.00135 * 179.97438 * 9 8 6 11 11 O 1.21276 * 119.99837 * 0.02562 * 9 8 6 12 12 C 1.46908 * 110.99855 * 123.95020 * 2 1 3 13 13 C 1.50702 * 109.46924 * 66.04639 * 12 2 1 14 14 C 1.38298 * 119.93116 * 269.72262 * 13 12 2 15 15 C 1.38101 * 120.06916 * 179.72401 * 14 13 12 16 16 C 1.38880 * 119.93007 * 0.57389 * 15 14 13 17 17 O 1.35750 * 120.06847 * 179.68280 * 16 15 14 18 18 C 1.34825 * 116.99901 * 174.49053 * 17 16 15 19 19 H 1.08004 * 120.00181 * 5.04694 * 18 17 16 20 20 C 1.38659 * 120.00045 * 185.05605 * 18 17 16 21 21 N 1.31550 * 119.99874 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99879 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47023 * 89.99976 * 22 20 18 24 24 H 1.48495 * 109.46835 * 209.99722 * 22 20 18 25 25 H 1.48493 * 109.47362 * 329.99934 * 22 20 18 26 26 C 1.38885 * 119.86093 * 359.70140 * 16 15 14 27 27 C 1.38101 * 119.93180 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.47373 * 60.00288 * 1 2 3 29 29 H 1.09003 * 109.47451 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47266 * 300.00260 * 1 2 3 31 31 H 1.08994 * 109.47248 * 53.94966 * 3 2 1 32 32 H 1.08995 * 109.47316 * 173.95432 * 3 2 1 33 33 H 1.09006 * 109.47087 * 299.99963 * 4 3 2 34 34 H 1.08996 * 109.47687 * 59.99334 * 4 3 2 35 35 H 0.97001 * 119.99575 * 0.02562 * 5 4 3 36 36 H 1.09002 * 109.47488 * 299.99746 * 8 6 5 37 37 H 1.08995 * 109.47443 * 60.00230 * 8 6 5 38 38 H 0.97006 * 119.99521 * 0.02562 * 10 9 8 39 39 H 0.96993 * 120.00467 * 180.02562 * 10 9 8 40 40 H 1.08999 * 109.46650 * 186.04005 * 12 2 1 41 41 H 1.08994 * 109.47465 * 306.04673 * 12 2 1 42 42 H 1.07999 * 119.96453 * 359.97438 * 14 13 12 43 43 H 1.08005 * 120.03385 * 180.27530 * 15 14 13 44 44 H 0.96996 * 119.99854 * 179.97438 * 21 20 18 45 45 H 1.07999 * 120.03044 * 179.97438 * 26 16 15 46 46 H 1.07999 * 119.96690 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1560 3.4252 -1.3181 6 6 1.9554 4.2240 -2.3850 7 8 1.3403 3.8106 -3.3450 8 6 2.4955 5.6309 -2.3850 9 6 2.1368 6.3066 -3.6835 10 7 2.5178 7.5796 -3.9084 11 8 1.5045 5.7051 -4.5256 12 6 1.9954 -0.7660 1.1377 13 6 1.6368 -2.2204 0.9730 14 6 0.4528 -2.7032 1.4999 15 6 0.1187 -4.0343 1.3457 16 6 0.9787 -4.8909 0.6710 17 8 0.6561 -6.2012 0.5234 18 6 1.4773 -6.9517 -0.2383 19 1 2.3886 -6.5258 -0.6314 20 6 1.1518 -8.2704 -0.5171 21 7 0.0419 -8.7893 -0.0381 22 14 2.2892 -9.3100 -1.5731 23 1 3.2788 -9.9980 -0.7055 24 1 1.4916 -10.3211 -2.3124 25 1 3.0015 -8.4373 -2.5407 26 6 2.1698 -4.4043 0.1480 27 6 2.4955 -3.0709 0.3006 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.5611 1.9273 0.8308 32 1 3.0797 1.3443 0.1082 33 1 2.0658 1.5014 -2.1492 34 1 0.5472 2.0844 -1.4266 35 1 2.6482 3.7558 -0.5505 36 1 2.0608 6.1870 -1.5543 37 1 3.5797 5.6039 -2.2764 38 1 3.0233 8.0608 -3.2346 39 1 2.2867 8.0147 -4.7439 40 1 3.0796 -0.6611 1.1756 41 1 1.5611 -0.3872 2.0629 42 1 -0.2132 -2.0376 2.0290 43 1 -0.8083 -4.4097 1.7536 44 1 -0.1860 -9.7117 -0.2335 45 1 2.8408 -5.0681 -0.3768 46 1 3.4217 -2.6920 -0.1055 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690931790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:06 Heat of formation + Delta-G solvation = -99.065993 kcal Electronic energy + Delta-G solvation = -27156.446454 eV Core-core repulsion = 23045.696896 eV Total energy + Delta-G solvation = -4110.749558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.22016 -40.83273 -39.66741 -39.08296 -37.64767 -35.59692 -34.58968 -34.29235 -32.25284 -31.81175 -31.21099 -29.17103 -28.15045 -27.13037 -24.97421 -23.56722 -22.71767 -22.24453 -21.65591 -20.97992 -19.83258 -18.81567 -18.50848 -18.18345 -17.12142 -17.04572 -16.89533 -16.59403 -16.44007 -16.23480 -16.08157 -15.68736 -15.43105 -15.39222 -15.10449 -14.67472 -14.44714 -14.37510 -14.29845 -14.25814 -13.93285 -13.56226 -12.97649 -12.97381 -12.85254 -12.67070 -12.58377 -12.45196 -12.20449 -12.13618 -12.01380 -11.91026 -11.24081 -11.15046 -10.78727 -10.55824 -10.55620 -10.03528 -9.73348 -9.25540 -8.86312 -8.46807 -6.14735 0.62878 0.70024 1.34613 1.43792 1.52217 1.67925 1.79106 1.98014 2.17981 2.73065 2.85696 3.10276 3.39374 3.54321 3.70483 3.91063 4.03074 4.09523 4.14286 4.22460 4.23948 4.44139 4.45525 4.49882 4.52367 4.59009 4.62660 4.64792 4.80009 4.86223 4.95042 5.02745 5.11638 5.15920 5.18897 5.33017 5.46569 5.59261 5.74247 5.83102 5.98054 6.03992 6.11128 6.17769 6.28813 6.55775 6.65619 6.98175 7.37039 7.52385 7.79688 8.76508 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020006 B = 0.001656 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.242744 B =16899.128990 C =17688.157198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.553 5.553 3 C 0.056 3.944 4 C 0.127 3.873 5 N -0.713 5.713 6 C 0.499 3.501 7 O -0.564 6.564 8 C -0.152 4.152 9 C 0.503 3.497 10 N -0.837 5.837 11 O -0.574 6.574 12 C 0.119 3.881 13 C -0.154 4.154 14 C -0.058 4.058 15 C -0.207 4.207 16 C 0.112 3.888 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.261 1.261 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.246 4.246 27 C -0.050 4.050 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.421 0.579 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.421 0.579 39 H 0.405 0.595 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.272 0.728 45 H 0.115 0.885 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 35.726 3.446 37.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.278 5.278 3 C -0.072 4.072 4 C 0.002 3.998 5 N -0.369 5.369 6 C 0.285 3.715 7 O -0.441 6.441 8 C -0.194 4.194 9 C 0.287 3.713 10 N -0.403 5.403 11 O -0.452 6.452 12 C -0.007 4.007 13 C -0.155 4.155 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.179 1.179 26 C -0.265 4.265 27 C -0.068 4.068 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.259 0.741 36 H 0.185 0.815 37 H 0.184 0.816 38 H 0.253 0.747 39 H 0.236 0.764 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.067 34.361 2.014 35.862 hybrid contribution -0.057 -0.373 0.287 0.474 sum 10.010 33.988 2.301 35.506 Atomic orbital electron populations 1.22472 0.87459 1.02078 1.00898 1.61769 1.08321 1.13393 1.44283 1.22187 1.01873 0.87812 0.95302 1.21100 0.98315 0.81979 0.98420 1.45689 1.58094 1.13140 1.19939 1.20873 0.79950 0.88560 0.82163 1.90889 1.41435 1.76105 1.35661 1.21649 1.07386 0.92159 0.98156 1.20695 0.78738 0.82765 0.89074 1.43698 1.59312 1.13372 1.23915 1.90924 1.40688 1.65287 1.48257 1.20829 1.00887 0.87754 0.91263 1.19621 0.95973 0.96219 1.03713 1.20876 0.96288 0.92806 0.97631 1.20436 1.00558 0.94243 1.07363 1.19963 0.94256 0.84736 0.94855 1.83933 1.50495 1.16475 1.63262 1.21811 1.03877 0.93853 1.29394 0.88220 1.26576 0.98947 0.97466 0.99051 1.70181 1.25195 1.15390 1.45160 0.84597 0.76869 0.77325 0.77491 1.18588 1.19619 1.17861 1.21262 0.98521 0.97977 1.08747 1.20920 0.99364 0.91114 0.95441 0.91844 0.92364 0.93914 0.92100 0.88174 0.93351 0.93280 0.74144 0.81537 0.81599 0.74707 0.76446 0.88508 0.92535 0.83819 0.87162 0.91890 0.86702 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.98 127.69 1.15 1.56 16 2 N -0.55 -11.23 4.75 -927.09 -4.41 -15.64 16 3 C 0.06 0.72 5.07 86.30 0.44 1.16 16 4 C 0.13 2.22 5.60 86.38 0.48 2.71 16 5 N -0.71 -8.00 5.56 -463.06 -2.57 -10.58 16 6 C 0.50 8.78 7.82 87.66 0.69 9.47 16 7 O -0.56 -18.51 14.18 20.42 0.29 -18.22 16 8 C -0.15 -0.81 6.19 29.10 0.18 -0.63 16 9 C 0.50 7.30 8.09 87.66 0.71 8.01 16 10 N -0.84 -3.48 8.87 -173.53 -1.54 -5.02 16 11 O -0.57 -17.38 15.02 20.43 0.31 -17.08 16 12 C 0.12 2.39 5.12 85.56 0.44 2.83 16 13 C -0.15 -4.61 4.89 -19.83 -0.10 -4.71 16 14 C -0.06 -1.88 7.90 22.25 0.18 -1.71 16 15 C -0.21 -8.88 9.99 22.39 0.22 -8.66 16 16 C 0.11 5.71 6.65 22.58 0.15 5.86 16 17 O -0.23 -14.50 9.76 -22.70 -0.22 -14.72 16 18 C -0.41 -24.68 9.49 67.92 0.64 -24.03 16 19 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 20 C -0.02 -1.34 5.49 84.84 0.47 -0.88 16 21 N -0.92 -57.60 13.67 21.61 0.30 -57.30 16 22 Si 1.02 43.94 29.55 68.60 2.03 45.96 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 26 C -0.25 -10.94 9.17 22.39 0.21 -10.73 16 27 C -0.05 -1.72 9.69 22.25 0.22 -1.51 16 28 H 0.06 1.40 6.47 -2.39 -0.02 1.38 16 29 H 0.06 1.53 5.90 -2.39 -0.01 1.51 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.55 8.12 -2.39 -0.02 0.53 16 32 H 0.10 0.93 7.93 -2.39 -0.02 0.91 16 33 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.05 1.07 6.55 -2.39 -0.02 1.05 16 35 H 0.42 0.70 8.47 -92.71 -0.79 -0.09 16 36 H 0.17 -0.59 8.14 -2.39 -0.02 -0.60 16 37 H 0.17 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.42 -2.03 8.83 -92.70 -0.82 -2.85 16 39 H 0.40 1.91 8.93 -92.71 -0.83 1.08 16 40 H 0.10 1.59 7.87 -2.39 -0.02 1.57 16 41 H 0.06 0.95 8.06 -2.39 -0.02 0.93 16 42 H 0.14 3.64 8.00 -2.91 -0.02 3.62 16 43 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.12 5.25 5.64 -2.91 -0.02 5.24 16 46 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -98.36 385.80 -1.14 -99.50 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -1.38 Total: 14.35 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 6.07 Total: -21.26 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -8.22 Total: -88.54 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: 0.37 Total: -50.02 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -98.36 -1.14 -99.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690931790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.437 kcal (2) G-P(sol) polarization free energy of solvation -98.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds