Wall clock time and date at job start Tue Mar 31 2020 18:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99719 * 2 1 4 4 C 1.53003 * 109.47296 * 269.99439 * 3 2 1 5 5 H 1.08999 * 112.78861 * 284.19803 * 4 3 2 6 6 C 1.53508 * 113.47496 * 153.37908 * 4 3 2 7 7 C 1.53516 * 83.57706 * 219.21410 * 6 4 3 8 8 N 1.47484 * 87.93044 * 26.02937 * 7 6 4 9 9 C 1.46906 * 110.99709 * 221.29807 * 8 7 6 10 10 C 1.50698 * 109.46688 * 265.96661 * 9 8 7 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99634 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00399 * 0.02562 * 13 12 10 15 15 C 1.38954 * 120.00062 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99693 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00141 * 179.72913 * 15 13 12 18 18 H 1.48502 * 109.47314 * 180.27179 * 17 15 13 19 19 H 1.48506 * 109.46947 * 300.27161 * 17 15 13 20 20 H 1.48493 * 109.47595 * 60.27030 * 17 15 13 21 21 C 1.34774 * 119.99804 * 179.97438 * 2 1 3 22 22 O 1.21283 * 119.99855 * 180.02562 * 21 2 1 23 23 C 1.50696 * 120.00098 * 359.97438 * 21 2 1 24 24 C 1.50706 * 109.47381 * 179.97438 * 23 21 2 25 25 C 1.34510 * 125.78835 * 89.99857 * 24 23 21 26 26 C 1.41375 * 106.84200 * 180.02562 * 25 24 23 27 27 C 1.34512 * 106.84159 * 359.97438 * 26 25 24 28 28 O 1.34298 * 108.41778 * 359.74316 * 27 26 25 29 29 H 1.09000 * 109.46881 * 89.99993 * 1 2 3 30 30 H 1.08996 * 109.46926 * 210.00138 * 1 2 3 31 31 H 1.09000 * 109.47049 * 330.00352 * 1 2 3 32 32 H 1.09008 * 109.47039 * 149.99744 * 3 2 1 33 33 H 1.08998 * 109.47667 * 30.00317 * 3 2 1 34 34 H 1.08993 * 114.17673 * 332.86574 * 6 4 3 35 35 H 1.09008 * 114.16479 * 105.38158 * 6 4 3 36 36 H 1.08998 * 113.47778 * 271.26446 * 7 6 4 37 37 H 1.08994 * 113.47825 * 140.79539 * 7 6 4 38 38 H 1.09003 * 109.46625 * 145.97243 * 9 8 7 39 39 H 1.08993 * 109.47154 * 25.97386 * 9 8 7 40 40 H 0.96991 * 120.00493 * 0.02562 * 12 10 9 41 41 H 0.97005 * 120.00032 * 359.72836 * 16 15 13 42 42 H 1.08994 * 109.47628 * 300.00182 * 23 21 2 43 43 H 1.09003 * 109.47081 * 60.00444 * 23 21 2 44 44 H 1.08005 * 126.58012 * 0.04635 * 25 24 23 45 45 H 1.08003 * 126.57908 * 180.02562 * 26 25 24 46 46 H 1.08000 * 125.79045 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 3.2506 1.1439 -1.9226 6 6 2.6015 3.2301 -1.5995 7 6 1.7995 3.0021 -2.8885 8 7 1.2250 1.8005 -2.2550 9 6 1.1443 0.6886 -3.2118 10 6 -0.2220 0.6713 -3.8475 11 8 -1.0470 1.5036 -3.5347 12 7 -0.5266 -0.2683 -4.7644 13 6 -1.7694 -0.2838 -5.3431 14 1 -2.5041 0.4572 -5.0646 15 6 -2.0838 -1.2529 -6.2880 16 7 -1.1897 -2.1542 -6.6273 17 14 -3.7796 -1.2786 -7.0710 18 1 -3.8631 -2.4057 -8.0342 19 1 -4.8096 -1.4521 -6.0153 20 1 -4.0143 0.0017 -7.7857 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1672 0.0010 23 6 1.3854 -2.4723 0.0017 24 6 2.3647 -3.6178 0.0014 25 6 2.8767 -4.2152 1.0924 26 6 3.7456 -5.2314 0.6332 27 6 3.7123 -5.1947 -0.7110 28 8 2.8696 -4.2193 -1.0880 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1500 1.1384 0.5139 33 1 1.6085 2.0284 0.5139 34 1 2.0743 3.8108 -0.8426 35 1 3.6266 3.5638 -1.7612 36 1 2.4232 2.7804 -3.7544 37 1 1.0644 3.7822 -3.0863 38 1 1.3140 -0.2530 -2.6897 39 1 1.9027 0.8179 -3.9838 40 1 0.1332 -0.9336 -5.0148 41 1 -0.3090 -2.1406 -6.2210 42 1 0.7591 -2.5295 0.8919 43 1 0.7584 -2.5306 -0.8881 44 1 2.6644 -3.9665 2.1218 45 1 4.3245 -5.9081 1.2444 46 1 4.2655 -5.8428 -1.3745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691666366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:48 Heat of formation + Delta-G solvation = -3.496180 kcal Electronic energy + Delta-G solvation = -29759.002669 eV Core-core repulsion = 25652.397329 eV Total energy + Delta-G solvation = -4106.605340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.58622 -40.61047 -39.35640 -37.88781 -35.42918 -34.26327 -33.24384 -32.32027 -31.31882 -30.60065 -29.08916 -27.18594 -26.18649 -25.62119 -23.64712 -23.34399 -21.78580 -20.82890 -19.80020 -19.66396 -19.15847 -17.90025 -17.44521 -17.22057 -16.44759 -16.24685 -15.92841 -15.87690 -15.55112 -14.98416 -14.57334 -14.38822 -14.09889 -13.71597 -13.56287 -13.46889 -13.20661 -12.85731 -12.78028 -12.76048 -12.68706 -12.56142 -12.31557 -11.85997 -11.61455 -11.53516 -11.35453 -11.20956 -10.98710 -10.88134 -10.57454 -10.21228 -9.97088 -9.88863 -9.85657 -9.53191 -8.99872 -8.51873 -8.48807 -8.24082 -8.02540 -6.74292 -3.87748 1.67419 2.52274 2.55762 2.84140 3.13787 3.30551 3.34257 3.54560 3.84193 3.97243 4.30875 4.40535 4.46397 4.57107 4.80305 4.88260 4.91652 4.97447 5.09216 5.13633 5.18362 5.18771 5.25601 5.31645 5.40760 5.42292 5.59249 5.59982 5.66286 5.71789 5.74438 5.76584 5.84882 5.93156 6.02946 6.04543 6.08185 6.18530 6.41007 6.45568 6.53229 7.11277 7.13937 7.32320 7.80781 8.08326 8.08992 8.61164 8.81548 9.48618 9.90046 10.68868 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008482 B = 0.004055 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.493718 B = 6903.751706 C = 9352.241537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.603 5.603 3 C 0.138 3.862 4 C 0.003 3.997 5 H 0.078 0.922 6 C -0.136 4.136 7 C 0.004 3.996 8 N -0.428 5.428 9 C 0.011 3.989 10 C 0.450 3.550 11 O -0.568 6.568 12 N -0.579 5.579 13 C -0.381 4.381 14 H 0.098 0.902 15 C -0.009 4.009 16 N -0.901 5.901 17 Si 1.090 2.910 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.514 3.486 22 O -0.535 6.535 23 C -0.065 4.065 24 C 0.011 3.989 25 C -0.200 4.200 26 C -0.216 4.216 27 C -0.037 4.037 28 O -0.169 6.169 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.374 0.626 41 H 0.261 0.739 42 H 0.123 0.877 43 H 0.114 0.886 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 0.050 15.183 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.336 5.336 3 C 0.015 3.985 4 C -0.107 4.107 5 H 0.096 0.904 6 C -0.174 4.174 7 C -0.125 4.125 8 N -0.150 5.150 9 C -0.121 4.121 10 C 0.235 3.765 11 O -0.451 6.451 12 N -0.217 5.217 13 C -0.511 4.511 14 H 0.116 0.884 15 C -0.212 4.212 16 N -0.540 5.540 17 Si 0.916 3.084 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.301 3.699 22 O -0.412 6.412 23 C -0.104 4.104 24 C -0.040 4.040 25 C -0.219 4.219 26 C -0.235 4.235 27 C -0.105 4.105 28 O -0.065 6.065 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.207 0.793 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.595 -0.120 14.293 16.186 hybrid contribution 2.238 0.069 0.532 2.302 sum 9.834 -0.052 14.824 17.789 Atomic orbital electron populations 1.21930 0.78174 1.02446 1.03789 1.47703 1.07644 1.05393 1.72856 1.21459 0.97425 0.84430 0.95197 1.23898 0.93722 0.96724 0.96404 0.90448 1.23164 1.00522 0.94975 0.98767 1.23743 0.97357 0.95669 0.95777 1.68766 1.29689 1.02346 1.14219 1.22482 0.97485 0.96407 0.95747 1.19562 0.88840 0.84583 0.83472 1.90523 1.50160 1.39991 1.64389 1.41973 1.14652 1.27940 1.37177 1.20502 0.90871 1.17052 1.22642 0.88395 1.26482 1.06563 0.92456 0.95673 1.70900 1.05702 1.34501 1.42906 0.83146 0.72470 0.76484 0.76263 1.20431 1.21006 1.21074 1.20365 0.87966 0.85046 0.76512 1.90715 1.13705 1.87250 1.49555 1.20167 0.95787 0.87799 1.06650 1.21508 1.00544 0.97451 0.84508 1.21464 1.01835 0.99522 0.99100 1.21762 1.04294 1.02674 0.94793 1.24008 0.96718 0.93657 0.96131 1.84027 1.47892 1.39728 1.34841 0.90759 0.91734 0.90623 0.89759 0.89787 0.88769 0.90714 0.91758 0.89332 0.90178 0.92763 0.79336 0.92788 0.85903 0.86772 0.83754 0.83576 0.78181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 9.82 59.85 0.59 1.51 16 2 N -0.60 -7.53 2.59 -181.57 -0.47 -8.00 16 3 C 0.14 1.62 5.60 -4.04 -0.02 1.60 16 4 C 0.00 0.04 3.35 -71.43 -0.24 -0.19 16 5 H 0.08 1.09 7.91 -51.93 -0.41 0.68 16 6 C -0.14 -1.47 8.00 -26.20 -0.21 -1.68 16 7 C 0.00 0.05 7.71 -7.54 -0.06 -0.01 16 8 N -0.43 -6.80 4.85 -237.92 -1.15 -7.96 16 9 C 0.01 0.20 4.62 -4.97 -0.02 0.18 16 10 C 0.45 10.52 7.85 -10.99 -0.09 10.44 16 11 O -0.57 -15.20 16.01 5.55 0.09 -15.11 16 12 N -0.58 -14.55 5.28 -10.96 -0.06 -14.60 16 13 C -0.38 -10.64 9.68 -14.93 -0.14 -10.79 16 14 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 15 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 16 N -0.90 -25.33 13.68 55.50 0.76 -24.57 16 17 Si 1.09 24.20 29.92 -169.99 -5.09 19.11 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.51 7.14 7.67 -10.99 -0.08 7.06 16 22 O -0.54 -9.21 15.61 5.55 0.09 -9.12 16 23 C -0.06 -0.76 4.79 -29.03 -0.14 -0.90 16 24 C 0.01 0.15 5.82 -35.62 -0.21 -0.06 16 25 C -0.20 -2.48 10.81 -39.71 -0.43 -2.91 16 26 C -0.22 -2.47 10.91 -39.71 -0.43 -2.90 16 27 C -0.04 -0.44 12.09 29.42 0.36 -0.08 16 28 O -0.17 -2.52 10.65 5.73 0.06 -2.46 16 29 H 0.07 1.14 7.21 -51.93 -0.37 0.76 16 30 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 31 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 32 H 0.08 1.00 7.42 -51.92 -0.39 0.61 16 33 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16 34 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.06 0.89 7.42 -51.93 -0.39 0.50 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.41 7.83 -51.93 -0.41 1.00 16 39 H 0.05 0.94 7.30 -51.93 -0.38 0.56 16 40 H 0.37 8.88 6.73 -40.82 -0.27 8.61 16 41 H 0.26 7.11 6.78 -40.82 -0.28 6.83 16 42 H 0.12 1.05 7.40 -51.93 -0.38 0.66 16 43 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 44 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 46 H 0.20 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 385.74 15.07 5.81 5.81 Total: -1.00 -35.81 385.74 -7.72 -43.53 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -6.54 Total: 12.46 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.23 Total: 0.91 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.92 Total: -55.13 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: 0.24 Total: -26.69 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.09 Total: 19.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.81 -7.72 -43.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691666366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.032 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds