Wall clock time and date at job start Tue Mar 31 2020 18:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99719 * 2 1 4 4 C 1.53003 * 109.47296 * 269.99439 * 3 2 1 5 5 H 1.08999 * 112.78861 * 284.19803 * 4 3 2 6 6 C 1.53508 * 113.47496 * 153.37908 * 4 3 2 7 7 C 1.53516 * 83.57706 * 219.21410 * 6 4 3 8 8 N 1.47484 * 87.93044 * 26.02937 * 7 6 4 9 9 C 1.46906 * 110.99709 * 221.29807 * 8 7 6 10 10 C 1.50698 * 109.46688 * 265.96661 * 9 8 7 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37102 * 119.99634 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00399 * 0.02562 * 13 12 10 15 15 C 1.38954 * 120.00062 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99693 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00141 * 179.72913 * 15 13 12 18 18 H 1.48502 * 109.47314 * 180.27179 * 17 15 13 19 19 H 1.48506 * 109.46947 * 300.27161 * 17 15 13 20 20 H 1.48493 * 109.47595 * 60.27030 * 17 15 13 21 21 C 1.34774 * 119.99804 * 179.97438 * 2 1 3 22 22 O 1.21283 * 119.99855 * 180.02562 * 21 2 1 23 23 C 1.50696 * 120.00098 * 359.97438 * 21 2 1 24 24 C 1.50706 * 109.47381 * 179.97438 * 23 21 2 25 25 C 1.34510 * 125.78835 * 89.99857 * 24 23 21 26 26 C 1.41375 * 106.84200 * 180.02562 * 25 24 23 27 27 C 1.34512 * 106.84159 * 359.97438 * 26 25 24 28 28 O 1.34298 * 108.41778 * 359.74316 * 27 26 25 29 29 H 1.09000 * 109.46881 * 89.99993 * 1 2 3 30 30 H 1.08996 * 109.46926 * 210.00138 * 1 2 3 31 31 H 1.09000 * 109.47049 * 330.00352 * 1 2 3 32 32 H 1.09008 * 109.47039 * 149.99744 * 3 2 1 33 33 H 1.08998 * 109.47667 * 30.00317 * 3 2 1 34 34 H 1.08993 * 114.17673 * 332.86574 * 6 4 3 35 35 H 1.09008 * 114.16479 * 105.38158 * 6 4 3 36 36 H 1.08998 * 113.47778 * 271.26446 * 7 6 4 37 37 H 1.08994 * 113.47825 * 140.79539 * 7 6 4 38 38 H 1.09003 * 109.46625 * 145.97243 * 9 8 7 39 39 H 1.08993 * 109.47154 * 25.97386 * 9 8 7 40 40 H 0.96991 * 120.00493 * 0.02562 * 12 10 9 41 41 H 0.97005 * 120.00032 * 359.72836 * 16 15 13 42 42 H 1.08994 * 109.47628 * 300.00182 * 23 21 2 43 43 H 1.09003 * 109.47081 * 60.00444 * 23 21 2 44 44 H 1.08005 * 126.58012 * 0.04635 * 25 24 23 45 45 H 1.08003 * 126.57908 * 180.02562 * 26 25 24 46 46 H 1.08000 * 125.79045 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 3.2506 1.1439 -1.9226 6 6 2.6015 3.2301 -1.5995 7 6 1.7995 3.0021 -2.8885 8 7 1.2250 1.8005 -2.2550 9 6 1.1443 0.6886 -3.2118 10 6 -0.2220 0.6713 -3.8475 11 8 -1.0470 1.5036 -3.5347 12 7 -0.5266 -0.2683 -4.7644 13 6 -1.7694 -0.2838 -5.3431 14 1 -2.5041 0.4572 -5.0646 15 6 -2.0838 -1.2529 -6.2880 16 7 -1.1897 -2.1542 -6.6273 17 14 -3.7796 -1.2786 -7.0710 18 1 -3.8631 -2.4057 -8.0342 19 1 -4.8096 -1.4521 -6.0153 20 1 -4.0143 0.0017 -7.7857 21 6 2.1389 -1.1672 0.0005 22 8 3.3517 -1.1672 0.0010 23 6 1.3854 -2.4723 0.0017 24 6 2.3647 -3.6178 0.0014 25 6 2.8767 -4.2152 1.0924 26 6 3.7456 -5.2314 0.6332 27 6 3.7123 -5.1947 -0.7110 28 8 2.8696 -4.2193 -1.0880 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1500 1.1384 0.5139 33 1 1.6085 2.0284 0.5139 34 1 2.0743 3.8108 -0.8426 35 1 3.6266 3.5638 -1.7612 36 1 2.4232 2.7804 -3.7544 37 1 1.0644 3.7822 -3.0863 38 1 1.3140 -0.2530 -2.6897 39 1 1.9027 0.8179 -3.9838 40 1 0.1332 -0.9336 -5.0148 41 1 -0.3090 -2.1406 -6.2210 42 1 0.7591 -2.5295 0.8919 43 1 0.7584 -2.5306 -0.8881 44 1 2.6644 -3.9665 2.1218 45 1 4.3245 -5.9081 1.2444 46 1 4.2655 -5.8428 -1.3745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691666366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:47 Heat of formation + Delta-G solvation = -29.053701 kcal Electronic energy + Delta-G solvation = -29760.110926 eV Core-core repulsion = 25652.397329 eV Total energy + Delta-G solvation = -4107.713597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.52782 -41.77285 -40.55542 -39.71473 -36.51283 -36.31233 -34.20548 -33.32411 -33.16643 -32.08052 -30.12614 -28.14173 -27.34420 -27.16581 -25.39723 -24.37797 -22.70947 -21.77684 -21.53228 -20.83183 -20.19742 -19.95704 -18.41663 -18.23160 -18.08755 -17.36314 -17.26782 -17.07418 -16.64028 -16.30131 -16.21160 -15.68330 -15.47057 -15.27271 -15.00109 -14.53829 -14.36825 -14.19651 -13.87624 -13.75375 -13.74188 -13.56945 -13.36234 -13.29975 -12.87065 -12.79097 -12.70373 -12.51702 -12.41282 -12.08892 -11.92475 -11.88017 -11.70727 -11.50866 -11.04532 -10.84129 -10.50005 -10.11249 -9.94958 -9.55612 -9.41721 -8.92496 -6.06627 0.73076 1.47373 1.52069 1.54018 1.64831 1.82051 1.93149 1.98773 2.20667 2.39111 2.71726 3.15139 3.26099 3.43106 3.51282 3.65779 3.76751 3.96717 4.04665 4.11456 4.12240 4.14381 4.22035 4.24458 4.28351 4.31350 4.34970 4.42240 4.56884 4.66284 4.74922 4.79599 4.88708 4.94016 4.98161 5.04274 5.17568 5.18575 5.28341 5.47589 5.59932 5.61022 5.91112 5.96589 6.18929 6.30111 6.56163 6.74561 7.04242 7.43425 7.91731 8.54255 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008482 B = 0.004055 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.493718 B = 6903.751706 C = 9352.241537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.599 5.599 3 C 0.136 3.864 4 C 0.006 3.994 5 H 0.065 0.935 6 C -0.109 4.109 7 C -0.008 4.008 8 N -0.445 5.445 9 C 0.029 3.971 10 C 0.455 3.545 11 O -0.601 6.601 12 N -0.590 5.590 13 C -0.406 4.406 14 H 0.076 0.924 15 C -0.042 4.042 16 N -0.918 5.918 17 Si 1.133 2.867 18 H -0.275 1.275 19 H -0.270 1.270 20 H -0.273 1.273 21 C 0.512 3.488 22 O -0.572 6.572 23 C -0.062 4.062 24 C -0.019 4.019 25 C -0.204 4.204 26 C -0.223 4.223 27 C -0.049 4.049 28 O -0.201 6.201 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.379 0.621 41 H 0.256 0.744 42 H 0.157 0.843 43 H 0.108 0.892 44 H 0.164 0.836 45 H 0.173 0.827 46 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.656 0.198 16.657 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.331 5.331 3 C 0.013 3.987 4 C -0.105 4.105 5 H 0.083 0.917 6 C -0.147 4.147 7 C -0.137 4.137 8 N -0.167 5.167 9 C -0.103 4.103 10 C 0.242 3.758 11 O -0.486 6.486 12 N -0.230 5.230 13 C -0.535 4.535 14 H 0.094 0.906 15 C -0.240 4.240 16 N -0.557 5.557 17 Si 0.953 3.047 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.198 1.198 21 C 0.301 3.699 22 O -0.452 6.452 23 C -0.101 4.101 24 C -0.069 4.069 25 C -0.223 4.223 26 C -0.242 4.242 27 C -0.116 4.116 28 O -0.098 6.098 29 H 0.054 0.946 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.213 0.787 41 H 0.067 0.933 42 H 0.175 0.825 43 H 0.126 0.874 44 H 0.181 0.819 45 H 0.190 0.810 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.994 0.043 15.789 17.697 hybrid contribution 2.180 0.059 0.128 2.185 sum 10.174 0.102 15.917 18.891 Atomic orbital electron populations 1.21921 0.77595 1.04554 1.01859 1.47770 1.07956 1.05422 1.71913 1.21582 0.97982 0.84615 0.94527 1.23917 0.91826 0.98399 0.96331 0.91668 1.23115 1.01534 0.93329 0.96707 1.23856 0.97607 0.94594 0.97646 1.68775 1.31811 1.01967 1.14183 1.22261 0.93919 0.97877 0.96261 1.20448 0.90335 0.82936 0.82080 1.90490 1.51888 1.41042 1.65155 1.42045 1.14222 1.28788 1.37922 1.20502 0.91789 1.17294 1.23895 0.90628 1.27827 1.09223 0.91476 0.95505 1.70980 1.05962 1.35248 1.43555 0.82644 0.69005 0.77043 0.76048 1.19933 1.19506 1.19844 1.20704 0.87606 0.85897 0.75713 1.90689 1.15280 1.87802 1.51453 1.20255 0.95502 0.86394 1.07922 1.21916 1.01773 0.98489 0.84762 1.21844 1.01396 0.99312 0.99728 1.22171 1.04222 1.02794 0.94999 1.24766 0.96248 0.93291 0.97284 1.84003 1.48923 1.40848 1.36023 0.94577 0.88939 0.89341 0.89528 0.87719 0.87139 0.88177 0.91610 0.90741 0.89793 0.91845 0.78741 0.93305 0.82540 0.87383 0.81885 0.80961 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.84 9.82 127.77 1.25 3.10 16 2 N -0.60 -14.23 2.59 -846.75 -2.20 -16.43 16 3 C 0.14 2.94 5.60 86.38 0.48 3.42 16 4 C 0.01 0.14 3.35 42.19 0.14 0.28 16 5 H 0.07 1.78 7.91 -2.39 -0.02 1.76 16 6 C -0.11 -2.07 8.00 30.94 0.25 -1.82 16 7 C -0.01 -0.22 7.71 83.58 0.64 0.42 16 8 N -0.44 -13.88 4.85 -906.65 -4.39 -18.27 16 9 C 0.03 1.06 4.62 85.56 0.40 1.45 16 10 C 0.45 21.77 7.85 87.66 0.69 22.45 16 11 O -0.60 -32.95 16.01 -3.07 -0.05 -33.00 16 12 N -0.59 -30.51 5.28 -306.98 -1.62 -32.13 16 13 C -0.41 -23.18 9.68 84.04 0.81 -22.37 16 14 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 15 C -0.04 -2.31 5.50 84.93 0.47 -1.85 16 16 N -0.92 -52.03 13.68 21.66 0.30 -51.73 16 17 Si 1.13 48.51 29.92 68.60 2.05 50.56 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 C 0.51 13.90 7.67 87.66 0.67 14.58 16 22 O -0.57 -19.57 15.61 -3.04 -0.05 -19.62 16 23 C -0.06 -1.42 4.79 29.10 0.14 -1.28 16 24 C -0.02 -0.53 5.82 24.83 0.14 -0.38 16 25 C -0.20 -4.81 10.81 22.19 0.24 -4.57 16 26 C -0.22 -4.79 10.91 22.19 0.24 -4.54 16 27 C -0.05 -1.12 12.09 66.97 0.81 -0.32 16 28 O -0.20 -6.05 10.65 -2.40 -0.03 -6.08 16 29 H 0.04 1.10 7.21 -2.39 -0.02 1.08 16 30 H 0.09 1.49 6.44 -2.39 -0.02 1.48 16 31 H 0.09 1.73 7.89 -2.39 -0.02 1.71 16 32 H 0.09 1.89 7.42 -2.38 -0.02 1.87 16 33 H 0.10 1.84 7.63 -2.39 -0.02 1.82 16 34 H 0.11 1.80 7.94 -2.39 -0.02 1.78 16 35 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.76 7.42 -2.39 -0.02 1.75 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 3.00 7.83 -2.39 -0.02 2.98 16 39 H 0.06 2.20 7.30 -2.39 -0.02 2.18 16 40 H 0.38 18.58 6.73 -92.72 -0.62 17.96 16 41 H 0.26 14.24 6.78 -92.70 -0.63 13.61 16 42 H 0.16 2.36 7.40 -2.39 -0.02 2.34 16 43 H 0.11 2.60 8.11 -2.39 -0.02 2.58 16 44 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 45 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 46 H 0.23 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -79.32 385.74 1.92 -77.40 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: 0.52 Total: 40.73 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 7.38 Total: 8.58 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -7.91 Total: -118.56 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.12 Total: -58.70 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.05 Total: 50.56 kcal Total: -79.32 1.92 -77.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691666366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.345 kcal (2) G-P(sol) polarization free energy of solvation -79.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds