Wall clock time and date at job start Tue Mar 31 2020 18:37:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.46498 * 120.00388 * 2 1
4 4 C 1.52997 * 109.47183 * 274.75445 * 3 2 1
5 5 H 1.09005 * 112.77785 * 316.06141 * 4 3 2
6 6 C 1.53753 * 113.55557 * 86.91753 * 4 3 2
7 7 C 1.53506 * 83.25683 * 140.98990 * 6 4 3
8 8 N 1.47059 * 113.46963 * 185.28555 * 4 3 2
9 9 C 1.36942 * 136.05841 * 38.12554 * 8 4 3
10 10 H 1.08001 * 119.99833 * 354.29180 * 9 8 4
11 11 C 1.38810 * 119.99978 * 174.01186 * 9 8 4
12 12 N 1.31618 * 120.00127 * 0.28226 * 11 9 8
13 13 Si 1.86807 * 119.99844 * 180.27964 * 11 9 8
14 14 H 1.48497 * 109.46896 * 60.00029 * 13 11 9
15 15 H 1.48500 * 109.46888 * 180.02562 * 13 11 9
16 16 H 1.48503 * 109.46890 * 299.99966 * 13 11 9
17 17 C 1.34781 * 119.99629 * 180.02562 * 2 1 3
18 18 O 1.21277 * 119.99977 * 175.09503 * 17 2 1
19 19 C 1.50698 * 120.00150 * 355.08659 * 17 2 1
20 20 C 1.52995 * 109.47052 * 180.02562 * 19 17 2
21 21 N 1.46505 * 109.47185 * 180.02562 * 20 19 17
22 22 C 1.34771 * 120.00309 * 179.97438 * 21 20 19
23 23 O 1.21700 * 119.99883 * 0.02562 * 22 21 20
24 24 C 1.46660 * 120.00182 * 179.97438 * 22 21 20
25 25 C 1.36540 * 125.98564 * 180.02562 * 24 22 21
26 26 C 1.40370 * 106.70781 * 179.97438 * 25 24 22
27 27 C 1.35128 * 107.11221 * 359.97438 * 26 25 24
28 28 O 1.33934 * 108.76660 * 359.75706 * 27 26 25
29 29 H 1.08995 * 109.46955 * 89.99588 * 1 2 3
30 30 H 1.08992 * 109.47141 * 209.99968 * 1 2 3
31 31 H 1.09001 * 109.46566 * 329.99972 * 1 2 3
32 32 H 1.08997 * 109.47208 * 154.74686 * 3 2 1
33 33 H 1.09008 * 109.46756 * 34.75009 * 3 2 1
34 34 H 1.09000 * 114.39056 * 27.43071 * 6 4 3
35 35 H 1.08992 * 114.27212 * 254.54353 * 6 4 3
36 36 H 1.09000 * 113.46851 * 218.98853 * 7 6 4
37 37 H 1.08994 * 113.51920 * 88.55326 * 7 6 4
38 38 H 0.96999 * 120.00046 * 180.02562 * 12 11 9
39 39 H 1.09003 * 109.47139 * 300.00799 * 19 17 2
40 40 H 1.09002 * 109.47235 * 60.00255 * 19 17 2
41 41 H 1.08990 * 109.47394 * 300.00173 * 20 19 17
42 42 H 1.09003 * 109.47133 * 60.00477 * 20 19 17
43 43 H 0.97001 * 119.99391 * 0.02562 * 21 20 19
44 44 H 1.08002 * 126.64869 * 359.97438 * 25 24 22
45 45 H 1.07997 * 126.44522 * 179.97438 * 26 25 24
46 46 H 1.08000 * 125.61535 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.3491 1.7701 -1.4375
5 1 2.6343 0.9800 -2.1322
6 6 1.1579 2.6120 -1.9233
7 6 2.2557 3.4489 -2.5947
8 7 3.1798 2.9782 -1.5519
9 6 4.3167 3.4534 -0.9545
10 1 4.7576 2.9156 -0.1281
11 6 4.9058 4.6230 -1.4148
12 7 4.3684 5.2784 -2.4218
13 14 6.4611 5.2669 -0.6049
14 1 7.5382 4.2516 -0.7245
15 1 6.8859 6.5214 -1.2764
16 1 6.1952 5.5398 0.8304
17 6 2.1389 -1.1673 -0.0005
18 8 3.3483 -1.1692 -0.0903
19 6 1.3895 -2.4700 0.1107
20 6 2.3828 -3.6334 0.0868
21 7 1.6543 -4.8999 0.1943
22 6 2.3281 -6.0671 0.1937
23 8 3.5418 -6.0690 0.1043
24 6 1.5987 -7.3349 0.3019
25 6 2.1548 -8.5819 0.3139
26 6 1.0954 -9.4951 0.4320
27 6 -0.0464 -8.7745 0.4868
28 8 0.2615 -7.4731 0.4138
29 1 -0.3633 0.0001 -1.0276
30 1 -0.3633 -0.8899 0.5138
31 1 -0.3632 0.8900 0.5139
32 1 3.1842 1.1185 0.4384
33 1 1.6480 2.0056 0.5858
34 1 0.6213 3.1326 -1.1301
35 1 0.4995 2.0956 -2.6218
36 1 2.0682 4.5219 -2.5564
37 1 2.5167 3.1021 -3.5946
38 1 4.7802 6.0955 -2.7436
39 1 0.8305 -2.4889 1.0463
40 1 0.6987 -2.5644 -0.7272
41 1 2.9420 -3.6146 -0.8485
42 1 3.0733 -3.5388 0.9250
43 1 0.6869 -4.8983 0.2652
44 1 3.2062 -8.8196 0.2457
45 1 1.1774 -10.5712 0.4716
46 1 -1.0428 -9.1809 0.5790
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691675402.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:37:30
Heat of formation + Delta-G solvation = 11.737203 kcal
Electronic energy + Delta-G solvation = -27899.727602 eV
Core-core repulsion = 23793.782832 eV
Total energy + Delta-G solvation = -4105.944771 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-43.10614 -40.12167 -39.52438 -38.00994 -35.62557 -35.20834 -33.52228 -32.18240
-31.71509 -30.12942 -28.43044 -27.87315 -26.45350 -24.78961 -23.41798 -22.94533
-22.19014 -21.81685 -20.79737 -19.39580 -19.17415 -18.59037 -17.23398 -16.85051
-16.73978 -16.71513 -16.10526 -15.86802 -15.70980 -15.13702 -14.69402 -14.45303
-14.18291 -13.92340 -13.53444 -13.44719 -13.39053 -13.23421 -13.06657 -12.86076
-12.68559 -12.55196 -12.07378 -11.79276 -11.72766 -11.45333 -11.08052 -10.86690
-10.72505 -10.68555 -10.51758 -10.41840 -9.84223 -9.82611 -9.71292 -9.53616
-9.38814 -9.10175 -8.74753 -8.32265 -6.82833 -5.72271 -3.03989 0.64386
1.91581 2.21550 2.70089 2.72076 2.83504 3.23989 3.44730 3.48861
3.50701 4.20845 4.43538 4.45493 4.51284 4.59463 4.63188 4.76938
5.00985 5.16858 5.17958 5.24038 5.32200 5.37605 5.43721 5.49606
5.53317 5.62969 5.65823 5.75239 5.81913 5.86133 5.96675 5.98740
6.18625 6.30622 6.35666 6.45117 6.53784 6.69813 6.88562 7.06411
7.26977 7.43126 7.52170 7.60790 7.72229 8.03240 8.29068 9.09660
9.75890 10.69679 11.45854
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.022171 B = 0.001910 C = 0.001805
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1262.597740 B =14656.601003 C =15504.460705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.610 5.610
3 C 0.115 3.885
4 C 0.133 3.867
5 H 0.042 0.958
6 C -0.167 4.167
7 C 0.157 3.843
8 N -0.600 5.600
9 C -0.216 4.216
10 H 0.080 0.920
11 C -0.008 4.008
12 N -0.921 5.921
13 Si 0.911 3.089
14 H -0.284 1.284
15 H -0.290 1.290
16 H -0.284 1.284
17 C 0.512 3.488
18 O -0.529 6.529
19 C -0.151 4.151
20 C 0.132 3.868
21 N -0.720 5.720
22 C 0.601 3.399
23 O -0.513 6.513
24 C -0.078 4.078
25 C -0.120 4.120
26 C -0.225 4.225
27 C -0.008 4.008
28 O -0.165 6.165
29 H 0.058 0.942
30 H 0.066 0.934
31 H 0.073 0.927
32 H 0.084 0.916
33 H 0.077 0.923
34 H 0.075 0.925
35 H 0.052 0.948
36 H 0.065 0.935
37 H 0.024 0.976
38 H 0.253 0.747
39 H 0.099 0.901
40 H 0.100 0.900
41 H 0.083 0.917
42 H 0.082 0.918
43 H 0.404 0.596
44 H 0.161 0.839
45 H 0.157 0.843
46 H 0.211 0.789
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.570 -25.908 6.579 31.987
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 N -0.344 5.344
3 C -0.008 4.008
4 C 0.025 3.975
5 H 0.060 0.940
6 C -0.206 4.206
7 C 0.032 3.968
8 N -0.326 5.326
9 C -0.343 4.343
10 H 0.098 0.902
11 C -0.204 4.204
12 N -0.568 5.568
13 Si 0.741 3.259
14 H -0.211 1.211
15 H -0.216 1.216
16 H -0.211 1.211
17 C 0.298 3.702
18 O -0.405 6.405
19 C -0.192 4.192
20 C 0.009 3.991
21 N -0.372 5.372
22 C 0.387 3.613
23 O -0.389 6.389
24 C -0.130 4.130
25 C -0.141 4.141
26 C -0.244 4.244
27 C -0.077 4.077
28 O -0.061 6.061
29 H 0.076 0.924
30 H 0.084 0.916
31 H 0.092 0.908
32 H 0.102 0.898
33 H 0.095 0.905
34 H 0.094 0.906
35 H 0.071 0.929
36 H 0.084 0.916
37 H 0.042 0.958
38 H 0.063 0.937
39 H 0.117 0.883
40 H 0.118 0.882
41 H 0.101 0.899
42 H 0.101 0.899
43 H 0.239 0.761
44 H 0.179 0.821
45 H 0.175 0.825
46 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges -15.926 -25.331 6.524 30.625
hybrid contribution 0.325 0.089 0.234 0.410
sum -15.601 -25.242 6.758 30.434
Atomic orbital electron populations
1.21804 0.79833 1.02806 1.02010 1.47871 1.06892 1.06493 1.73113
1.21909 0.97418 0.82267 0.99204 1.22453 0.90422 0.91094 0.93521
0.94027 1.23788 0.96212 0.99973 1.00613 1.21929 0.85249 0.98586
0.91075 1.45725 1.28561 1.16066 1.42242 1.18895 0.99986 1.04986
1.10445 0.90183 1.24811 0.99089 0.98406 0.98115 1.69833 1.40886
1.18317 1.27749 0.86217 0.83170 0.78026 0.78489 1.21095 1.21605
1.21066 1.20211 0.87946 0.84960 0.77082 1.90790 1.14024 1.87017
1.48635 1.21827 0.99600 0.92928 1.04824 1.21167 0.93717 0.79615
1.04626 1.45874 1.10984 1.05843 1.74471 1.16510 0.86278 0.81243
0.77256 1.90942 1.12104 1.86095 1.49791 1.22111 0.80762 0.96274
1.13895 1.22031 1.01408 0.90500 1.00121 1.21898 0.91914 1.01396
1.09178 1.24433 1.00820 0.79841 1.02641 1.84050 1.23747 1.28118
1.70153 0.92372 0.91556 0.90802 0.89764 0.90477 0.90602 0.92904
0.91628 0.95793 0.93673 0.88254 0.88217 0.89850 0.89927 0.76116
0.82118 0.82514 0.77254
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.68 10.30 59.85 0.62 1.30 16
2 N -0.61 -8.31 2.87 -181.57 -0.52 -8.83 16
3 C 0.11 2.05 5.42 -4.04 -0.02 2.03 16
4 C 0.13 2.77 4.32 -72.26 -0.31 2.46 16
5 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16
6 C -0.17 -3.06 8.03 -26.08 -0.21 -3.27 16
7 C 0.16 3.76 7.27 -8.50 -0.06 3.70 16
8 N -0.60 -15.69 3.64 -176.83 -0.64 -16.33 16
9 C -0.22 -6.21 10.55 -15.06 -0.16 -6.36 16
10 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16
11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16
12 N -0.92 -27.96 11.65 55.49 0.65 -27.32 16
13 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16
14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16
15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16
16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
17 C 0.51 7.32 7.66 -10.98 -0.08 7.23 16
18 O -0.53 -10.31 15.54 5.56 0.09 -10.22 16
19 C -0.15 -1.33 4.27 -27.89 -0.12 -1.45 16
20 C 0.13 1.44 4.96 -4.04 -0.02 1.42 16
21 N -0.72 -6.47 5.55 -61.63 -0.34 -6.81 16
22 C 0.60 6.90 7.79 -12.86 -0.10 6.80 16
23 O -0.51 -7.88 16.87 5.19 0.09 -7.79 16
24 C -0.08 -0.74 7.13 -36.80 -0.26 -1.00 16
25 C -0.12 -1.02 10.62 -39.39 -0.42 -1.44 16
26 C -0.22 -1.32 10.88 -39.89 -0.43 -1.76 16
27 C -0.01 -0.04 12.08 29.63 0.36 0.32 16
28 O -0.17 -1.21 10.40 5.01 0.05 -1.16 16
29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.07 0.37 6.44 -51.93 -0.33 0.04 16
31 H 0.07 0.60 7.94 -51.93 -0.41 0.19 16
32 H 0.08 1.77 7.35 -51.93 -0.38 1.39 16
33 H 0.08 1.29 7.71 -51.92 -0.40 0.89 16
34 H 0.08 1.30 7.96 -51.93 -0.41 0.89 16
35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
36 H 0.07 1.71 7.38 -51.93 -0.38 1.32 16
37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16
38 H 0.25 7.46 8.31 -40.82 -0.34 7.13 16
39 H 0.10 0.61 7.58 -51.93 -0.39 0.22 16
40 H 0.10 0.65 8.05 -51.93 -0.42 0.23 16
41 H 0.08 1.10 8.10 -51.93 -0.42 0.67 16
42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16
43 H 0.40 2.40 8.23 -40.82 -0.34 2.06 16
44 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16
45 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16
46 H 0.21 0.14 8.06 -52.49 -0.42 -0.29 16
LS Contribution 391.87 15.07 5.91 5.91
Total: -1.00 -37.97 391.87 -7.90 -45.87
By element:
Atomic # 1 Polarization: 6.02 SS G_CDS: -6.82 Total: -0.79 kcal
Atomic # 6 Polarization: 10.98 SS G_CDS: -1.32 Total: 9.66 kcal
Atomic # 7 Polarization: -58.43 SS G_CDS: -0.86 Total: -59.29 kcal
Atomic # 8 Polarization: -19.40 SS G_CDS: 0.23 Total: -19.18 kcal
Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -37.97 -7.90 -45.87 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691675402.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.605 kcal
(2) G-P(sol) polarization free energy of solvation -37.972 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.868 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds