Wall clock time and date at job start Tue Mar 31 2020 18:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00007 * 2 1 4 4 H 1.08002 * 120.00088 * 154.65148 * 3 2 1 5 5 C 1.38818 * 119.99816 * 334.65585 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.04078 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.03812 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46502 * 120.00106 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47052 * 89.99980 * 11 2 1 13 13 H 1.09010 * 110.88783 * 54.30013 * 12 11 2 14 14 C 1.55157 * 111.00633 * 178.17645 * 12 11 2 15 15 C 1.54377 * 102.91910 * 153.54515 * 14 12 11 16 16 N 1.47020 * 107.28920 * 337.86629 * 15 14 12 17 17 C 1.34778 * 125.64414 * 178.87054 * 16 15 14 18 18 O 1.21502 * 119.99770 * 180.02562 * 17 16 15 19 19 C 1.48324 * 120.00195 * 0.03782 * 17 16 15 20 20 N 1.31600 * 127.15948 * 359.68919 * 19 17 16 21 21 O 1.21562 * 111.54887 * 179.83513 * 20 19 17 22 22 C 1.32819 * 111.51819 * 0.39652 * 21 20 19 23 23 C 1.35711 * 106.70005 * 359.80375 * 22 21 20 24 24 C 1.50029 * 123.86241 * 179.82898 * 23 22 21 25 25 O 1.43619 * 107.82620 * 345.26706 * 24 23 22 26 26 C 1.42996 * 114.38607 * 50.01987 * 25 24 23 27 27 C 1.50660 * 130.82782 * 179.83588 * 22 21 20 28 28 C 1.47421 * 108.70509 * 358.90839 * 16 15 14 29 29 H 1.09003 * 109.47265 * 84.48492 * 1 2 3 30 30 H 1.08998 * 109.47517 * 324.48047 * 1 2 3 31 31 H 1.08999 * 109.46767 * 204.48077 * 1 2 3 32 32 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.47204 * 210.00155 * 11 2 1 34 34 H 1.08998 * 109.47314 * 330.00181 * 11 2 1 35 35 H 1.08995 * 110.72561 * 271.94216 * 14 12 11 36 36 H 1.09000 * 110.71425 * 35.21896 * 14 12 11 37 37 H 1.09002 * 109.89963 * 218.42586 * 15 14 12 38 38 H 1.09002 * 109.97053 * 97.34822 * 15 14 12 39 39 H 1.08993 * 109.79503 * 104.85072 * 24 23 22 40 40 H 1.09000 * 109.78665 * 225.69197 * 24 23 22 41 41 H 1.09001 * 109.39680 * 49.72354 * 26 25 24 42 42 H 1.09000 * 109.39743 * 169.45480 * 26 25 24 43 43 H 1.09001 * 109.82710 * 44.53498 * 27 22 21 44 44 H 1.09004 * 109.82699 * 283.60146 * 27 22 21 45 45 H 1.09007 * 110.36178 * 265.29030 * 28 16 15 46 46 H 1.08994 * 110.46482 * 143.01277 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1517 1.2310 0.4004 5 6 1.5558 2.3302 -0.5146 6 7 0.3072 2.2940 -0.9293 7 14 2.5288 3.9214 -0.6184 8 1 3.7208 3.7174 -1.4801 9 1 1.6737 4.9874 -1.1997 10 1 2.9648 4.3247 0.7426 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 2.9534 -0.9247 -2.0066 14 6 3.2676 -3.0306 -1.4830 15 6 2.8475 -3.6538 -2.8314 16 7 1.5493 -3.0689 -3.1975 17 6 0.8548 -3.3391 -4.3205 18 8 -0.2126 -2.7941 -4.5206 19 6 1.3933 -4.3019 -5.3120 20 7 2.5284 -4.9639 -5.2418 21 8 2.6879 -5.6808 -6.2105 22 6 1.6739 -5.5811 -7.0625 23 6 0.7995 -4.6927 -6.5259 24 6 -0.4895 -4.2898 -7.1793 25 8 -0.4398 -4.7161 -8.5498 26 6 -0.0590 -6.0826 -8.7297 27 6 1.4274 -6.2611 -8.3841 28 6 1.1335 -2.1373 -2.1333 29 1 -0.3634 0.0988 -1.0229 30 1 -0.3634 0.8364 0.5970 31 1 -0.3633 -0.9353 0.4259 32 1 -0.1077 3.0935 -1.2892 33 1 3.1499 -1.1382 0.5144 34 1 1.6085 -2.0282 0.5147 35 1 4.3377 -2.8236 -1.4697 36 1 2.9894 -3.6817 -0.6543 37 1 2.7510 -4.7345 -2.7267 38 1 3.5883 -3.4204 -3.5963 39 1 -1.3262 -4.7714 -6.6732 40 1 -0.6036 -3.2067 -7.1336 41 1 -0.6609 -6.7150 -8.0771 42 1 -0.2269 -6.3716 -9.7672 43 1 1.6632 -7.3223 -8.3036 44 1 2.0442 -5.8021 -9.1568 45 1 0.4783 -2.6413 -1.4227 46 1 0.6319 -1.2694 -2.5612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691998192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:46 Heat of formation + Delta-G solvation = 21.648551 kcal Electronic energy + Delta-G solvation = -29488.322886 eV Core-core repulsion = 25382.807903 eV Total energy + Delta-G solvation = -4105.514982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.38064 -39.87471 -39.22383 -37.58618 -35.35427 -34.31185 -33.56092 -32.29396 -31.00265 -30.52105 -28.71885 -27.04095 -26.36179 -25.63983 -24.54525 -24.07277 -22.61919 -21.16607 -21.04156 -19.74506 -19.32747 -18.18548 -17.74262 -17.03146 -16.64796 -16.42972 -16.08376 -15.78977 -15.35815 -15.19682 -14.79251 -14.39539 -14.07210 -13.90274 -13.62303 -13.52742 -13.19520 -13.01102 -12.72236 -12.51505 -12.30724 -12.12049 -11.96049 -11.58961 -11.52551 -11.43183 -10.96694 -10.78319 -10.70153 -10.63158 -10.47944 -10.26313 -10.21020 -10.17505 -10.06141 -9.89758 -9.77366 -9.47485 -8.52108 -8.47774 -6.72545 -5.70812 -3.17912 0.87883 1.33582 2.46699 2.86018 3.11761 3.30100 3.39789 3.45426 3.46048 3.76836 4.06660 4.28911 4.44261 4.50217 4.55890 4.68407 4.82675 4.91418 4.99602 5.04146 5.12450 5.18731 5.21175 5.31708 5.42226 5.44629 5.54951 5.67943 5.72342 5.75901 5.99815 6.01369 6.13439 6.20845 6.29356 6.45396 6.55504 6.63349 6.69067 6.83910 6.96266 7.51052 7.52606 7.69341 7.79136 7.89435 8.09043 8.44774 9.28184 9.89200 10.38951 11.33672 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017934 B = 0.002710 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.901913 B =10330.870444 C =10964.085131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.605 5.605 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.902 3.098 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.165 3.835 12 C -0.117 4.117 13 H 0.086 0.914 14 C -0.129 4.129 15 C 0.106 3.894 16 N -0.599 5.599 17 C 0.604 3.396 18 O -0.521 6.521 19 C 0.007 3.993 20 N -0.331 5.331 21 O 0.129 5.871 22 C -0.032 4.032 23 C -0.200 4.200 24 C 0.140 3.860 25 O -0.374 6.374 26 C 0.060 3.940 27 C -0.068 4.068 28 C 0.121 3.879 29 H 0.027 0.973 30 H 0.052 0.948 31 H -0.010 1.010 32 H 0.253 0.747 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.061 0.939 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -21.230 -13.256 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.327 5.327 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.192 4.192 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.211 1.211 11 C 0.036 3.964 12 C -0.139 4.139 13 H 0.104 0.896 14 C -0.168 4.168 15 C -0.017 4.017 16 N -0.332 5.332 17 C 0.389 3.611 18 O -0.396 6.396 19 C -0.151 4.151 20 N -0.035 5.035 21 O 0.058 5.942 22 C -0.097 4.097 23 C -0.205 4.205 24 C 0.063 3.937 25 O -0.292 6.292 26 C -0.017 4.017 27 C -0.106 4.106 28 C 0.001 3.999 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.008 0.992 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.084 0.916 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.810 -20.654 -12.664 24.390 hybrid contribution 0.180 0.852 -0.337 0.934 sum 2.990 -19.802 -13.002 23.877 Atomic orbital electron populations 1.20915 0.82285 0.95275 0.99435 1.43945 1.02010 1.00555 1.86210 1.19135 0.99211 0.86374 1.33953 0.91469 1.25163 0.96525 0.98725 0.98767 1.70068 1.11153 1.28068 1.45861 0.86375 0.79346 0.83253 0.77803 1.21022 1.21626 1.21051 1.20768 0.96100 0.88349 0.91152 1.23266 0.93666 0.95382 1.01606 0.89563 1.22740 1.00874 0.97793 0.95409 1.22112 0.84474 0.97520 0.97637 1.48489 1.21507 1.43661 1.19555 1.16411 0.84043 0.80869 0.79773 1.90819 1.21207 1.51381 1.76152 1.22886 0.93079 1.01627 0.97537 1.74786 1.17675 1.05797 1.05221 1.84654 1.38779 1.48280 1.22495 1.23980 0.88753 1.00581 0.96433 1.21360 1.01961 1.01472 0.95742 1.21008 0.90442 1.02132 0.80076 1.88146 1.88865 1.26928 1.25285 1.22738 0.91777 0.84079 1.03142 1.21049 0.99501 1.01338 0.88733 1.22434 0.97851 0.92120 0.87534 0.95513 0.92932 0.99165 0.93641 0.93154 0.94223 0.90170 0.90749 0.91543 0.91332 0.90284 0.85923 0.92062 0.86899 0.87706 0.87689 0.91587 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.11 8.25 59.85 0.49 4.61 16 2 N -0.60 -14.94 2.88 -181.12 -0.52 -15.46 16 3 C -0.26 -6.99 9.67 -15.06 -0.15 -7.13 16 4 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 5 C 0.01 0.18 5.38 -17.43 -0.09 0.09 16 6 N -0.91 -26.54 10.12 55.49 0.56 -25.98 16 7 Si 0.90 21.98 29.56 -169.99 -5.02 16.96 16 8 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 C 0.16 3.22 5.21 -4.04 -0.02 3.20 16 12 C -0.12 -2.09 3.27 -88.47 -0.29 -2.38 16 13 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 14 C -0.13 -1.76 6.43 -24.87 -0.16 -1.92 16 15 C 0.11 1.50 5.57 -3.04 -0.02 1.48 16 16 N -0.60 -10.28 3.33 -171.42 -0.57 -10.85 16 17 C 0.60 10.75 7.88 -12.11 -0.10 10.66 16 18 O -0.52 -10.56 16.55 5.36 0.09 -10.47 16 19 C 0.01 0.10 7.01 -82.90 -0.58 -0.48 16 20 N -0.33 -4.54 9.80 33.26 0.33 -4.22 16 21 O 0.13 1.48 11.17 20.03 0.22 1.70 16 22 C -0.03 -0.33 7.50 -35.23 -0.26 -0.59 16 23 C -0.20 -2.53 6.15 -104.93 -0.65 -3.17 16 24 C 0.14 1.61 6.67 35.68 0.24 1.84 16 25 O -0.37 -3.76 10.76 -35.23 -0.38 -4.14 16 26 C 0.06 0.36 6.77 37.49 0.25 0.61 16 27 C -0.07 -0.38 6.56 -27.57 -0.18 -0.56 16 28 C 0.12 2.28 5.58 -2.53 -0.01 2.26 16 29 H 0.03 0.72 7.01 -51.93 -0.36 0.36 16 30 H 0.05 1.43 7.03 -51.93 -0.37 1.06 16 31 H -0.01 -0.22 7.83 -51.93 -0.41 -0.63 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 37 H 0.07 0.87 7.81 -51.93 -0.41 0.47 16 38 H 0.07 0.97 7.68 -51.93 -0.40 0.58 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.12 1.56 8.00 -51.93 -0.42 1.14 16 41 H 0.06 0.32 8.10 -51.93 -0.42 -0.10 16 42 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.21 7.96 -51.92 -0.41 0.79 16 46 H 0.09 2.00 7.61 -51.93 -0.40 1.61 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -32.75 371.20 -8.13 -40.87 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.90 Total: -2.51 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -1.52 Total: 8.51 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.20 Total: -56.51 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.07 Total: -12.90 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.75 -8.13 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691998192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.523 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds