Wall clock time and date at job start Tue Mar 31 2020 18:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 119.99756 * 2 1 4 4 O 1.21285 * 119.99951 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.99931 * 359.97438 * 3 2 1 6 6 O 1.42908 * 109.46750 * 180.02562 * 5 3 2 7 7 C 1.42900 * 113.99855 * 180.02562 * 6 5 3 8 8 C 1.50699 * 109.47204 * 179.97438 * 7 6 5 9 9 C 1.38832 * 120.75386 * 90.00100 * 8 7 6 10 10 C 1.38047 * 119.29040 * 180.02562 * 9 8 7 11 11 N 1.31968 * 120.83076 * 0.02562 * 10 9 8 12 12 C 1.32248 * 121.65026 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.68358 * 180.02562 * 12 11 10 14 14 C 1.38373 * 120.75899 * 269.72258 * 8 7 6 15 15 C 1.46498 * 120.00166 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.77980 * 178.21516 * 15 2 1 17 17 C 1.55158 * 110.72069 * 54.97259 * 15 2 1 18 18 C 1.55122 * 101.48762 * 205.96821 * 17 15 2 19 19 N 1.47431 * 104.72104 * 37.29897 * 18 17 15 20 20 C 1.36933 * 125.64811 * 155.81923 * 19 18 17 21 21 H 1.08005 * 119.99933 * 199.28695 * 20 19 18 22 22 C 1.38808 * 120.00365 * 19.28278 * 20 19 18 23 23 N 1.31627 * 119.99820 * 28.57549 * 22 20 19 24 24 Si 1.86799 * 120.00377 * 208.29906 * 22 20 19 25 25 H 1.48497 * 109.47095 * 180.27771 * 24 22 20 26 26 H 1.48503 * 109.47115 * 300.27695 * 24 22 20 27 27 H 1.48496 * 109.47139 * 60.27388 * 24 22 20 28 28 C 1.47021 * 108.70053 * 335.54690 * 19 18 17 29 29 H 1.09001 * 109.46650 * 270.00243 * 1 2 3 30 30 H 1.08994 * 109.47382 * 29.99654 * 1 2 3 31 31 H 1.09000 * 109.47040 * 150.00094 * 1 2 3 32 32 H 1.08991 * 109.47579 * 299.99955 * 5 3 2 33 33 H 1.08994 * 109.46976 * 60.00899 * 5 3 2 34 34 H 1.09003 * 109.47150 * 300.00675 * 7 6 5 35 35 H 1.08999 * 109.46881 * 59.99807 * 7 6 5 36 36 H 1.08001 * 120.35808 * 359.97438 * 9 8 7 37 37 H 1.07990 * 119.58493 * 179.97438 * 10 9 8 38 38 H 0.96692 * 114.00028 * 90.00858 * 13 12 11 39 39 H 1.07999 * 120.44427 * 0.02562 * 14 8 7 40 40 H 1.09003 * 111.00655 * 324.21350 * 17 15 2 41 41 H 1.09001 * 111.00076 * 88.02317 * 17 15 2 42 42 H 1.09002 * 110.50005 * 278.45688 * 18 17 15 43 43 H 1.08999 * 110.34198 * 156.05923 * 18 17 15 44 44 H 0.96997 * 119.99651 * 5.39997 * 23 22 20 45 45 H 1.09007 * 109.87700 * 120.70641 * 28 19 18 46 46 H 1.08996 * 109.88710 * 241.87086 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 8 2.3140 3.5585 -0.0011 7 6 1.6994 4.8486 -0.0011 8 6 2.7660 5.9132 -0.0010 9 6 3.2686 6.4147 -1.1940 10 6 4.2457 7.3892 -1.1586 11 7 4.7044 7.8456 -0.0085 12 6 4.2509 7.3929 1.1483 13 8 4.7506 7.8908 2.3072 14 6 3.2628 6.4171 1.1882 15 6 2.1975 -1.2687 -0.0006 16 1 3.2730 -1.0942 -0.0322 17 6 1.7507 -2.1601 -1.1893 18 6 2.0692 -3.5787 -0.6486 19 7 1.7324 -3.5173 0.7854 20 6 1.4005 -4.5866 1.5737 21 1 0.8770 -4.4290 2.5052 22 6 1.7367 -5.8732 1.1757 23 7 2.7933 -6.0722 0.4164 24 14 0.6943 -7.3231 1.7241 25 1 1.2647 -8.5790 1.1740 26 1 0.6838 -7.3922 3.2075 27 1 -0.6942 -7.1505 1.2268 28 6 1.8183 -2.1187 1.2304 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 0.7590 2.5299 -0.8907 33 1 0.7584 2.5303 0.8892 34 1 1.0788 4.9555 -0.8908 35 1 1.0795 4.9557 0.8891 36 1 2.8996 6.0459 -2.1396 37 1 4.6403 7.7824 -2.0838 38 1 4.2716 8.6605 2.6435 39 1 2.8916 6.0525 2.1345 40 1 0.6849 -2.0434 -1.3862 41 1 2.3368 -1.9429 -2.0823 42 1 3.1264 -3.8090 -0.7804 43 1 1.4522 -4.3232 -1.1516 44 1 3.3810 -5.3317 0.1995 45 1 0.8541 -1.7944 1.6220 46 1 2.5849 -2.0206 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698560890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:12 Heat of formation + Delta-G solvation = -41.959439 kcal Electronic energy + Delta-G solvation = -28028.271709 eV Core-core repulsion = 23919.998477 eV Total energy + Delta-G solvation = -4108.273232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90339 -40.12250 -38.38467 -37.53858 -37.10545 -35.00664 -33.65626 -32.37967 -30.68056 -29.56005 -28.86883 -27.71829 -26.89067 -26.09903 -24.19332 -23.90400 -22.51172 -20.91512 -20.33855 -19.07174 -18.79949 -17.67479 -17.55467 -17.47111 -16.78920 -16.61255 -16.34675 -16.11583 -15.88615 -14.98232 -14.68238 -14.47229 -14.34278 -13.88511 -13.56533 -13.46665 -13.38997 -13.14893 -12.98367 -12.74976 -12.49335 -12.29293 -12.19887 -12.11411 -12.04019 -11.61941 -11.10836 -10.78515 -10.72257 -10.57229 -10.27893 -10.17544 -10.12193 -10.03418 -9.88443 -9.67926 -9.56019 -9.35629 -8.54032 -8.40692 -6.95894 -6.12785 -3.19035 0.57146 0.63996 2.56549 2.59798 3.08064 3.29082 3.48537 3.51520 3.67554 3.70288 4.15319 4.19694 4.46665 4.56369 4.57749 4.61054 4.68492 4.69631 4.86337 4.86943 5.02440 5.06253 5.16718 5.21755 5.26034 5.32391 5.41736 5.43791 5.54470 5.56583 5.74364 5.78571 5.94940 6.05636 6.08132 6.30665 6.38821 6.53109 6.58940 6.83690 6.89319 6.99503 7.06215 7.41861 7.48692 7.78146 8.17864 8.46408 8.99065 9.78428 10.33779 11.19480 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028561 B = 0.001822 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.112599 B =15365.700817 C =15537.137667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.601 5.601 3 C 0.512 3.488 4 O -0.520 6.520 5 C 0.047 3.953 6 O -0.355 6.355 7 C 0.099 3.901 8 C -0.029 4.029 9 C -0.160 4.160 10 C 0.122 3.878 11 N -0.500 5.500 12 C 0.308 3.692 13 O -0.480 6.480 14 C -0.163 4.163 15 C 0.128 3.872 16 H 0.106 0.894 17 C -0.144 4.144 18 C 0.145 3.855 19 N -0.600 5.600 20 C -0.339 4.339 21 H 0.064 0.936 22 C -0.025 4.025 23 N -0.913 5.913 24 Si 1.066 2.934 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.128 3.872 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.400 0.600 39 H 0.143 0.857 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.053 0.947 44 H 0.269 0.731 45 H 0.030 0.970 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 28.040 -3.725 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.299 3.701 4 O -0.395 6.395 5 C -0.033 4.033 6 O -0.273 6.273 7 C 0.023 3.977 8 C -0.037 4.037 9 C -0.180 4.180 10 C -0.035 4.035 11 N -0.220 5.220 12 C 0.130 3.870 13 O -0.287 6.287 14 C -0.184 4.184 15 C 0.025 3.975 16 H 0.124 0.876 17 C -0.184 4.184 18 C 0.019 3.981 19 N -0.327 5.327 20 C -0.467 4.467 21 H 0.082 0.918 22 C -0.227 4.227 23 N -0.553 5.553 24 Si 0.896 3.104 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.221 1.221 28 C 0.002 3.998 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.181 0.819 38 H 0.257 0.743 39 H 0.161 0.839 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.095 26.479 -3.769 27.431 hybrid contribution -1.062 1.442 0.409 1.837 sum -7.158 27.921 -3.359 29.019 Atomic orbital electron populations 1.21847 0.79620 1.03309 1.02301 1.47771 1.07006 1.05586 1.73140 1.20117 0.88137 0.84672 0.77221 1.90742 1.13654 1.86884 1.48225 1.22303 0.92030 0.86318 1.02620 1.88109 1.31563 1.12153 1.95461 1.21356 0.92683 0.81807 1.01903 1.19854 0.96246 0.94724 0.92866 1.22123 0.98692 0.98221 0.98950 1.22539 0.92730 0.93141 0.95053 1.67168 1.27230 1.29002 0.98582 1.19134 0.89929 0.92682 0.85281 1.84822 1.59008 1.50459 1.34443 1.22059 0.97244 0.99422 0.99698 1.22224 0.97359 0.81142 0.96763 0.87647 1.23233 1.01049 0.97288 0.96788 1.21563 0.98371 0.92670 0.85467 1.44516 1.82038 1.01671 1.04518 1.19695 1.34995 0.85847 1.06120 0.91850 1.25816 0.98156 0.98539 1.00201 1.70786 1.10465 1.34509 1.39512 0.83507 0.75414 0.76045 0.75467 1.21060 1.21977 1.22092 1.21572 0.98109 0.86319 0.93827 0.92165 0.91508 0.89853 0.90046 0.89997 0.91354 0.91495 0.84003 0.81870 0.74271 0.83910 0.91144 0.91508 0.95243 0.92821 0.91964 0.95255 0.95569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 9.13 59.85 0.55 1.29 16 2 N -0.60 -8.66 2.88 -171.84 -0.50 -9.15 16 3 C 0.51 7.66 7.75 -10.98 -0.09 7.58 16 4 O -0.52 -10.34 15.87 -14.36 -0.23 -10.56 16 5 C 0.05 0.46 4.97 36.00 0.18 0.64 16 6 O -0.35 -4.18 9.86 -55.14 -0.54 -4.73 16 7 C 0.10 0.73 6.11 36.01 0.22 0.95 16 8 C -0.03 -0.25 5.54 -104.35 -0.58 -0.83 16 9 C -0.16 -1.23 9.81 -39.43 -0.39 -1.62 16 10 C 0.12 1.00 11.18 -17.56 -0.20 0.81 16 11 N -0.50 -5.35 10.39 -13.33 -0.14 -5.49 16 12 C 0.31 3.11 7.74 -17.12 -0.13 2.98 16 13 O -0.48 -4.23 13.56 -18.72 -0.25 -4.48 16 14 C -0.16 -1.47 9.74 -39.28 -0.38 -1.85 16 15 C 0.13 2.32 3.35 -66.10 -0.22 2.10 16 16 H 0.11 2.13 7.00 -51.93 -0.36 1.76 16 17 C -0.14 -2.56 6.62 -24.47 -0.16 -2.72 16 18 C 0.15 3.34 5.39 -2.41 -0.01 3.33 16 19 N -0.60 -15.20 3.26 -169.93 -0.55 -15.75 16 20 C -0.34 -9.56 10.00 -15.06 -0.15 -9.71 16 21 H 0.06 1.78 7.97 -52.48 -0.42 1.36 16 22 C -0.02 -0.71 5.09 -17.43 -0.09 -0.80 16 23 N -0.91 -27.65 13.02 55.49 0.72 -26.92 16 24 Si 1.07 25.17 30.00 -169.99 -5.10 20.07 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 28 C 0.13 2.73 6.88 -3.07 -0.02 2.71 16 29 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 30 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 31 H 0.08 0.93 6.08 -51.93 -0.32 0.62 16 32 H 0.08 0.56 7.40 -51.93 -0.38 0.17 16 33 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 34 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 35 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.40 1.27 9.06 45.56 0.41 1.68 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.07 1.13 6.09 -51.93 -0.32 0.82 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.03 0.73 6.81 -51.93 -0.35 0.38 16 43 H 0.05 1.32 8.07 -51.93 -0.42 0.90 16 44 H 0.27 8.22 6.18 -40.82 -0.25 7.97 16 45 H 0.03 0.60 6.94 -51.93 -0.36 0.24 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -38.81 380.18 -8.02 -46.83 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.69 Total: -0.42 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.47 Total: 4.87 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.47 Total: -57.32 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -1.03 Total: -19.77 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.10 Total: 20.07 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.81 -8.02 -46.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698560890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.873 kcal (2) G-P(sol) polarization free energy of solvation -38.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds