Wall clock time and date at job start Tue Mar 31 2020 18:49:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.34769 * 119.99827 * 2 1
4 4 O 1.21286 * 119.99505 * 180.02562 * 3 2 1
5 5 C 1.50699 * 120.00238 * 0.02562 * 3 2 1
6 6 O 1.42905 * 109.47006 * 179.97438 * 5 3 2
7 7 C 1.42901 * 113.99620 * 179.97438 * 6 5 3
8 8 C 1.50706 * 109.46906 * 179.97438 * 7 6 5
9 9 C 1.38823 * 120.76159 * 269.98000 * 8 7 6
10 10 C 1.38042 * 119.29160 * 180.02562 * 9 8 7
11 11 N 1.31970 * 120.83393 * 359.74791 * 10 9 8
12 12 C 1.32245 * 121.64340 * 0.52006 * 11 10 9
13 13 O 1.35677 * 119.68178 * 179.75357 * 12 11 10
14 14 C 1.38377 * 120.75267 * 90.00134 * 8 7 6
15 15 C 1.46504 * 119.99763 * 180.02562 * 2 1 3
16 16 H 1.08995 * 110.63813 * 179.29946 * 15 2 1
17 17 C 1.55155 * 110.71840 * 302.43930 * 15 2 1
18 18 C 1.55127 * 101.48350 * 153.73690 * 17 15 2
19 19 N 1.47424 * 104.94006 * 323.22139 * 18 17 15
20 20 C 1.36937 * 125.64234 * 203.96738 * 19 18 17
21 21 H 1.08006 * 119.99787 * 180.02562 * 20 19 18
22 22 C 1.38816 * 120.00497 * 0.04350 * 20 19 18
23 23 N 1.31615 * 119.99435 * 359.97438 * 22 20 19
24 24 Si 1.86794 * 120.00009 * 179.97438 * 22 20 19
25 25 H 1.48499 * 109.47335 * 59.99984 * 24 22 20
26 26 H 1.48497 * 109.47216 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.47543 * 299.99679 * 24 22 20
28 28 C 1.47016 * 108.70530 * 24.00239 * 19 18 17
29 29 H 1.08994 * 109.47309 * 89.99739 * 1 2 3
30 30 H 1.08999 * 109.47172 * 210.00228 * 1 2 3
31 31 H 1.09002 * 109.47349 * 329.99513 * 1 2 3
32 32 H 1.09001 * 109.47011 * 60.00001 * 5 3 2
33 33 H 1.08994 * 109.47054 * 299.99819 * 5 3 2
34 34 H 1.09001 * 109.47350 * 60.00299 * 7 6 5
35 35 H 1.08994 * 109.47473 * 299.99682 * 7 6 5
36 36 H 1.08001 * 120.35369 * 359.97438 * 9 8 7
37 37 H 1.08004 * 119.58326 * 179.97438 * 10 9 8
38 38 H 0.96700 * 114.00259 * 269.72746 * 13 12 11
39 39 H 1.07999 * 120.44574 * 359.95522 * 14 8 7
40 40 H 1.09002 * 111.00254 * 271.93943 * 17 15 2
41 41 H 1.08998 * 111.00841 * 35.79046 * 17 15 2
42 42 H 1.08999 * 110.41701 * 204.28930 * 18 17 15
43 43 H 1.09002 * 110.29957 * 82.08645 * 18 17 15
44 44 H 0.97003 * 119.99295 * 180.02562 * 23 22 20
45 45 H 1.09002 * 109.88486 * 239.51985 * 28 19 18
46 46 H 1.09006 * 109.88166 * 118.35868 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1388 1.1672 0.0000
4 8 3.3517 1.1671 -0.0005
5 6 1.3854 2.4723 0.0006
6 8 2.3140 3.5584 0.0011
7 6 1.6994 4.8485 0.0011
8 6 2.7662 5.9131 0.0022
9 6 3.2675 6.4145 1.1957
10 6 4.2440 7.3897 1.1613
11 7 4.7063 7.8438 0.0117
12 6 4.2502 7.3947 -1.1455
13 8 4.7505 7.8933 -2.3040
14 6 3.2678 6.4133 -1.1864
15 6 2.1975 -1.2688 -0.0006
16 1 3.2729 -1.0916 -0.0130
17 6 1.7978 -2.1339 1.2238
18 6 2.0881 -3.5646 0.6991
19 7 1.7051 -3.5324 -0.7242
20 6 1.3452 -4.6172 -1.4784
21 1 1.0809 -4.4886 -2.5177
22 6 1.3197 -5.8822 -0.9072
23 7 1.6419 -6.0388 0.3593
24 14 0.8281 -7.3617 -1.9359
25 1 1.7652 -7.5032 -3.0792
26 1 0.8814 -8.5868 -1.0983
27 1 -0.5527 -7.1717 -2.4483
28 6 1.7743 -2.1430 -1.1998
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8899 0.5139
32 1 0.7591 2.5298 0.8908
33 1 0.7584 2.5302 -0.8891
34 1 1.0790 4.9555 0.8909
35 1 1.0797 4.9557 -0.8891
36 1 2.8970 6.0462 2.1409
37 1 4.6371 7.7835 2.0870
38 1 4.2713 8.6628 -2.6405
39 1 2.9008 6.0456 -2.1332
40 1 2.4187 -1.8982 2.0881
41 1 0.7405 -2.0126 1.4596
42 1 1.4862 -4.2965 1.2376
43 1 3.1481 -3.7971 0.8015
44 1 1.6244 -6.9228 0.7583
45 1 0.7965 -1.8263 -1.5627
46 1 2.5126 -2.0606 -1.9975
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001698560897.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:49:17
Heat of formation + Delta-G solvation = -36.542176 kcal
Electronic energy + Delta-G solvation = -28000.774240 eV
Core-core repulsion = 23892.735919 eV
Total energy + Delta-G solvation = -4108.038322 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.88053 -40.03056 -38.30495 -37.44969 -36.99204 -34.83934 -33.62564 -32.21940
-30.66023 -29.61340 -28.76146 -27.55288 -26.82936 -26.11244 -24.32319 -23.88203
-22.48739 -20.75190 -20.25117 -18.99830 -18.71709 -17.61210 -17.44108 -17.06146
-16.68268 -16.53240 -16.28956 -16.06332 -15.76546 -14.92445 -14.71806 -14.58748
-14.23050 -14.08954 -13.53206 -13.38973 -13.26968 -12.94075 -12.73723 -12.52533
-12.30195 -12.18659 -12.08935 -12.01001 -11.85206 -11.56462 -11.07712 -10.88951
-10.81502 -10.44304 -10.24412 -10.17092 -10.12948 -9.86716 -9.85316 -9.61993
-9.54472 -9.33331 -8.68663 -8.41487 -6.88195 -5.68600 -3.11091 0.59415
0.66392 2.64125 2.66864 3.10471 3.32482 3.38517 3.43027 3.44267
3.72322 4.18642 4.23378 4.46920 4.52755 4.59325 4.63522 4.71745
4.75114 4.90214 4.91830 5.08404 5.12099 5.28235 5.33640 5.39550
5.44148 5.49968 5.56077 5.67099 5.70891 5.81139 5.88114 6.07860
6.17541 6.31789 6.52315 6.53055 6.59012 6.66526 6.96163 7.07726
7.45171 7.50743 7.52345 7.58469 7.80743 8.25170 8.32059 9.17952
9.78476 10.42630 11.35071
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.029450 B = 0.001812 C = 0.001784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.526911 B =15445.675312 C =15691.888530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.073 3.927
2 N -0.600 5.600
3 C 0.512 3.488
4 O -0.522 6.522
5 C 0.047 3.953
6 O -0.355 6.355
7 C 0.099 3.901
8 C -0.029 4.029
9 C -0.160 4.160
10 C 0.122 3.878
11 N -0.500 5.500
12 C 0.308 3.692
13 O -0.481 6.481
14 C -0.163 4.163
15 C 0.127 3.873
16 H 0.104 0.896
17 C -0.153 4.153
18 C 0.153 3.847
19 N -0.602 5.602
20 C -0.223 4.223
21 H 0.077 0.923
22 C -0.011 4.011
23 N -0.922 5.922
24 Si 0.916 3.084
25 H -0.285 1.285
26 H -0.290 1.290
27 H -0.285 1.285
28 C 0.130 3.870
29 H 0.059 0.941
30 H 0.084 0.916
31 H 0.065 0.935
32 H 0.081 0.919
33 H 0.082 0.918
34 H 0.068 0.932
35 H 0.067 0.933
36 H 0.142 0.858
37 H 0.164 0.836
38 H 0.400 0.600
39 H 0.143 0.857
40 H 0.062 0.938
41 H 0.065 0.935
42 H 0.110 0.890
43 H 0.015 0.985
44 H 0.253 0.747
45 H 0.028 0.972
46 H 0.025 0.975
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.379 27.491 2.079 28.090
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.334 5.334
3 C 0.298 3.702
4 O -0.397 6.397
5 C -0.033 4.033
6 O -0.273 6.273
7 C 0.022 3.978
8 C -0.037 4.037
9 C -0.180 4.180
10 C -0.035 4.035
11 N -0.220 5.220
12 C 0.129 3.871
13 O -0.287 6.287
14 C -0.184 4.184
15 C 0.024 3.976
16 H 0.122 0.878
17 C -0.192 4.192
18 C 0.028 3.972
19 N -0.329 5.329
20 C -0.351 4.351
21 H 0.095 0.905
22 C -0.206 4.206
23 N -0.571 5.571
24 Si 0.747 3.253
25 H -0.212 1.212
26 H -0.215 1.215
27 H -0.212 1.212
28 C 0.003 3.997
29 H 0.078 0.922
30 H 0.103 0.897
31 H 0.084 0.916
32 H 0.099 0.901
33 H 0.100 0.900
34 H 0.086 0.914
35 H 0.085 0.915
36 H 0.160 0.840
37 H 0.181 0.819
38 H 0.257 0.743
39 H 0.161 0.839
40 H 0.080 0.920
41 H 0.083 0.917
42 H 0.128 0.872
43 H 0.033 0.967
44 H 0.064 0.936
45 H 0.046 0.954
46 H 0.043 0.957
Dipole moment (debyes) X Y Z Total
from point charges -3.499 27.412 2.071 27.712
hybrid contribution -1.483 -0.998 -0.703 1.921
sum -4.981 26.414 1.368 26.915
Atomic orbital electron populations
1.21834 0.79685 1.03345 1.02185 1.47802 1.07004 1.05681 1.72921
1.20092 0.88128 0.84673 0.77305 1.90734 1.13655 1.86909 1.48423
1.22313 0.92043 0.86370 1.02586 1.88108 1.31579 1.12135 1.95459
1.21356 0.92669 0.81854 1.01892 1.19864 0.96195 0.94759 0.92853
1.22121 0.98711 0.98167 0.98960 1.22539 0.92729 0.93173 0.95055
1.67162 1.27106 1.29142 0.98579 1.19128 0.89980 0.92701 0.85284
1.84821 1.58947 1.50474 1.34503 1.22051 0.97317 0.99301 0.99720
1.22278 0.97176 0.80984 0.97150 0.87835 1.23432 1.00677 0.98894
0.96196 1.21983 0.98654 0.91493 0.85074 1.44423 1.79627 1.00894
1.07928 1.19018 1.38079 0.84822 0.93226 0.90508 1.24801 1.01854
0.97486 0.96494 1.69771 1.54646 1.21686 1.10954 0.86126 0.78293
0.81974 0.78929 1.21186 1.21543 1.21163 1.21504 0.97918 0.86287
0.93978 0.92250 0.89742 0.91641 0.90075 0.90047 0.91370 0.91506
0.83992 0.81880 0.74278 0.83912 0.91966 0.91671 0.87230 0.96690
0.93602 0.95421 0.95696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.79 9.03 59.85 0.54 1.33 16
2 N -0.60 -8.88 2.88 -171.84 -0.50 -9.38 16
3 C 0.51 7.80 7.75 -10.99 -0.09 7.71 16
4 O -0.52 -10.47 15.87 -14.36 -0.23 -10.69 16
5 C 0.05 0.47 4.97 36.01 0.18 0.65 16
6 O -0.35 -4.25 9.86 -55.14 -0.54 -4.79 16
7 C 0.10 0.74 6.11 36.01 0.22 0.96 16
8 C -0.03 -0.25 5.54 -104.35 -0.58 -0.83 16
9 C -0.16 -1.24 9.81 -39.44 -0.39 -1.63 16
10 C 0.12 1.01 11.18 -17.56 -0.20 0.81 16
11 N -0.50 -5.38 10.39 -13.33 -0.14 -5.52 16
12 C 0.31 3.11 7.74 -17.12 -0.13 2.98 16
13 O -0.48 -4.23 13.56 -18.73 -0.25 -4.48 16
14 C -0.16 -1.47 9.75 -39.28 -0.38 -1.86 16
15 C 0.13 2.35 3.35 -66.10 -0.22 2.13 16
16 H 0.10 2.12 6.99 -51.93 -0.36 1.75 16
17 C -0.15 -2.87 6.64 -24.47 -0.16 -3.03 16
18 C 0.15 3.68 5.89 -2.41 -0.01 3.67 16
19 N -0.60 -15.30 3.40 -169.93 -0.58 -15.87 16
20 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16
21 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16
22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16
23 N -0.92 -26.53 10.09 55.49 0.56 -25.97 16
24 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16
25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
28 C 0.13 2.74 6.88 -3.07 -0.02 2.72 16
29 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16
30 H 0.08 1.02 6.24 -51.93 -0.32 0.69 16
31 H 0.06 0.47 6.44 -51.93 -0.33 0.14 16
32 H 0.08 0.59 7.40 -51.93 -0.38 0.20 16
33 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16
34 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16
35 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16
36 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16
37 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16
38 H 0.40 1.27 9.06 45.56 0.41 1.68 16
39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16
40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
41 H 0.06 1.14 6.24 -51.93 -0.32 0.82 16
42 H 0.11 2.92 5.87 -51.93 -0.31 2.62 16
43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
45 H 0.03 0.56 6.83 -51.93 -0.35 0.20 16
46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
LS Contribution 379.31 15.07 5.72 5.72
Total: -1.00 -37.27 379.31 -8.21 -45.48
By element:
Atomic # 1 Polarization: 5.52 SS G_CDS: -5.73 Total: -0.21 kcal
Atomic # 6 Polarization: 10.41 SS G_CDS: -1.49 Total: 8.92 kcal
Atomic # 7 Polarization: -56.09 SS G_CDS: -0.65 Total: -56.75 kcal
Atomic # 8 Polarization: -18.94 SS G_CDS: -1.03 Total: -19.97 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -37.27 -8.21 -45.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698560897.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.939 kcal
(2) G-P(sol) polarization free energy of solvation -37.274 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.481 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.542 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds