Wall clock time and date at job start Tue Mar 31 2020 18:49:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.34769 * 119.99827 * 2 1
4 4 O 1.21286 * 119.99505 * 180.02562 * 3 2 1
5 5 C 1.50699 * 120.00238 * 0.02562 * 3 2 1
6 6 O 1.42905 * 109.47006 * 179.97438 * 5 3 2
7 7 C 1.42901 * 113.99620 * 179.97438 * 6 5 3
8 8 C 1.50706 * 109.46906 * 179.97438 * 7 6 5
9 9 C 1.38823 * 120.76159 * 269.98000 * 8 7 6
10 10 C 1.38042 * 119.29160 * 180.02562 * 9 8 7
11 11 N 1.31970 * 120.83393 * 359.74791 * 10 9 8
12 12 C 1.32245 * 121.64340 * 0.52006 * 11 10 9
13 13 O 1.35677 * 119.68178 * 179.75357 * 12 11 10
14 14 C 1.38377 * 120.75267 * 90.00134 * 8 7 6
15 15 C 1.46504 * 119.99763 * 180.02562 * 2 1 3
16 16 H 1.08995 * 110.63813 * 179.29946 * 15 2 1
17 17 C 1.55155 * 110.71840 * 302.43930 * 15 2 1
18 18 C 1.55127 * 101.48350 * 153.73690 * 17 15 2
19 19 N 1.47424 * 104.94006 * 323.22139 * 18 17 15
20 20 C 1.36937 * 125.64234 * 203.96738 * 19 18 17
21 21 H 1.08006 * 119.99787 * 180.02562 * 20 19 18
22 22 C 1.38816 * 120.00497 * 0.04350 * 20 19 18
23 23 N 1.31615 * 119.99435 * 359.97438 * 22 20 19
24 24 Si 1.86794 * 120.00009 * 179.97438 * 22 20 19
25 25 H 1.48499 * 109.47335 * 59.99984 * 24 22 20
26 26 H 1.48497 * 109.47216 * 179.97438 * 24 22 20
27 27 H 1.48500 * 109.47543 * 299.99679 * 24 22 20
28 28 C 1.47016 * 108.70530 * 24.00239 * 19 18 17
29 29 H 1.08994 * 109.47309 * 89.99739 * 1 2 3
30 30 H 1.08999 * 109.47172 * 210.00228 * 1 2 3
31 31 H 1.09002 * 109.47349 * 329.99513 * 1 2 3
32 32 H 1.09001 * 109.47011 * 60.00001 * 5 3 2
33 33 H 1.08994 * 109.47054 * 299.99819 * 5 3 2
34 34 H 1.09001 * 109.47350 * 60.00299 * 7 6 5
35 35 H 1.08994 * 109.47473 * 299.99682 * 7 6 5
36 36 H 1.08001 * 120.35369 * 359.97438 * 9 8 7
37 37 H 1.08004 * 119.58326 * 179.97438 * 10 9 8
38 38 H 0.96700 * 114.00259 * 269.72746 * 13 12 11
39 39 H 1.07999 * 120.44574 * 359.95522 * 14 8 7
40 40 H 1.09002 * 111.00254 * 271.93943 * 17 15 2
41 41 H 1.08998 * 111.00841 * 35.79046 * 17 15 2
42 42 H 1.08999 * 110.41701 * 204.28930 * 18 17 15
43 43 H 1.09002 * 110.29957 * 82.08645 * 18 17 15
44 44 H 0.97003 * 119.99295 * 180.02562 * 23 22 20
45 45 H 1.09002 * 109.88486 * 239.51985 * 28 19 18
46 46 H 1.09006 * 109.88166 * 118.35868 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1388 1.1672 0.0000
4 8 3.3517 1.1671 -0.0005
5 6 1.3854 2.4723 0.0006
6 8 2.3140 3.5584 0.0011
7 6 1.6994 4.8485 0.0011
8 6 2.7662 5.9131 0.0022
9 6 3.2675 6.4145 1.1957
10 6 4.2440 7.3897 1.1613
11 7 4.7063 7.8438 0.0117
12 6 4.2502 7.3947 -1.1455
13 8 4.7505 7.8933 -2.3040
14 6 3.2678 6.4133 -1.1864
15 6 2.1975 -1.2688 -0.0006
16 1 3.2729 -1.0916 -0.0130
17 6 1.7978 -2.1339 1.2238
18 6 2.0881 -3.5646 0.6991
19 7 1.7051 -3.5324 -0.7242
20 6 1.3452 -4.6172 -1.4784
21 1 1.0809 -4.4886 -2.5177
22 6 1.3197 -5.8822 -0.9072
23 7 1.6419 -6.0388 0.3593
24 14 0.8281 -7.3617 -1.9359
25 1 1.7652 -7.5032 -3.0792
26 1 0.8814 -8.5868 -1.0983
27 1 -0.5527 -7.1717 -2.4483
28 6 1.7743 -2.1430 -1.1998
29 1 -0.3633 0.0000 -1.0276
30 1 -0.3633 -0.8900 0.5139
31 1 -0.3634 0.8899 0.5139
32 1 0.7591 2.5298 0.8908
33 1 0.7584 2.5302 -0.8891
34 1 1.0790 4.9555 0.8909
35 1 1.0797 4.9557 -0.8891
36 1 2.8970 6.0462 2.1409
37 1 4.6371 7.7835 2.0870
38 1 4.2713 8.6628 -2.6405
39 1 2.9008 6.0456 -2.1332
40 1 2.4187 -1.8982 2.0881
41 1 0.7405 -2.0126 1.4596
42 1 1.4862 -4.2965 1.2376
43 1 3.1481 -3.7971 0.8015
44 1 1.6244 -6.9228 0.7583
45 1 0.7965 -1.8263 -1.5627
46 1 2.5126 -2.0606 -1.9975
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001698560897.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:49:16
Heat of formation + Delta-G solvation = -65.828502 kcal
Electronic energy + Delta-G solvation = -28002.044191 eV
Core-core repulsion = 23892.735919 eV
Total energy + Delta-G solvation = -4109.308272 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.50530 -41.19939 -39.31908 -38.54576 -37.88118 -36.27911 -34.31725 -34.03871
-31.30663 -31.25440 -30.00903 -28.76685 -27.75332 -27.23280 -26.10775 -24.48838
-23.08468 -22.17453 -22.08810 -20.12134 -19.51479 -18.97075 -18.54089 -18.07942
-17.56405 -17.38748 -17.10207 -16.99699 -16.67911 -16.52640 -15.88711 -15.74905
-15.45431 -15.23564 -14.74247 -14.43303 -14.15067 -14.04200 -13.97199 -13.70212
-13.45070 -13.37363 -13.11233 -12.99787 -12.81110 -12.75037 -12.67447 -12.65015
-12.39230 -12.14174 -12.06841 -11.82783 -11.39900 -10.96803 -10.76856 -10.73930
-10.69446 -10.50122 -9.93586 -9.66972 -8.93022 -7.78410 -5.24382 -0.01148
0.05141 1.47320 1.50909 1.54157 1.57201 1.69414 2.47867 2.51993
2.67204 3.04013 3.31681 3.46067 3.68015 3.71365 3.78664 3.86825
3.95652 4.06343 4.06931 4.13474 4.21108 4.24007 4.32575 4.35746
4.45523 4.55676 4.59073 4.64508 4.71138 4.74846 4.85682 4.85974
4.95590 5.04328 5.08217 5.24765 5.44375 5.50595 5.56117 5.56913
5.76464 6.00583 6.27686 6.42438 6.60055 6.91128 7.08081 7.13685
7.74161 8.37913 9.23127
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.029450 B = 0.001812 C = 0.001784
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 950.526911 B =15445.675312 C =15691.888530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.065 3.935
2 N -0.598 5.598
3 C 0.504 3.496
4 O -0.583 6.583
5 C 0.055 3.945
6 O -0.395 6.395
7 C 0.097 3.903
8 C -0.041 4.041
9 C -0.160 4.160
10 C 0.112 3.888
11 N -0.533 5.533
12 C 0.290 3.710
13 O -0.496 6.496
14 C -0.173 4.173
15 C 0.141 3.859
16 H 0.077 0.923
17 C -0.131 4.131
18 C 0.155 3.845
19 N -0.622 5.622
20 C -0.241 4.241
21 H 0.081 0.919
22 C -0.066 4.066
23 N -0.948 5.948
24 Si 0.983 3.017
25 H -0.282 1.282
26 H -0.293 1.293
27 H -0.272 1.272
28 C 0.131 3.869
29 H 0.070 0.930
30 H 0.072 0.928
31 H 0.113 0.887
32 H 0.122 0.878
33 H 0.115 0.885
34 H 0.099 0.901
35 H 0.089 0.911
36 H 0.167 0.833
37 H 0.189 0.811
38 H 0.419 0.581
39 H 0.152 0.848
40 H 0.075 0.925
41 H 0.086 0.914
42 H 0.083 0.917
43 H -0.018 1.018
44 H 0.249 0.751
45 H 0.047 0.953
46 H 0.010 0.990
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.140 29.110 2.251 30.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 N -0.331 5.331
3 C 0.293 3.707
4 O -0.462 6.462
5 C -0.023 4.023
6 O -0.314 6.314
7 C 0.022 3.978
8 C -0.049 4.049
9 C -0.179 4.179
10 C -0.044 4.044
11 N -0.253 5.253
12 C 0.112 3.888
13 O -0.306 6.306
14 C -0.194 4.194
15 C 0.036 3.964
16 H 0.095 0.905
17 C -0.171 4.171
18 C 0.030 3.970
19 N -0.348 5.348
20 C -0.369 4.369
21 H 0.099 0.901
22 C -0.258 4.258
23 N -0.597 5.597
24 Si 0.811 3.189
25 H -0.209 1.209
26 H -0.219 1.219
27 H -0.198 1.198
28 C 0.005 3.995
29 H 0.089 0.911
30 H 0.091 0.909
31 H 0.132 0.868
32 H 0.140 0.860
33 H 0.133 0.867
34 H 0.117 0.883
35 H 0.107 0.893
36 H 0.185 0.815
37 H 0.205 0.795
38 H 0.280 0.720
39 H 0.170 0.830
40 H 0.093 0.907
41 H 0.104 0.896
42 H 0.101 0.899
43 H 0.000 1.000
44 H 0.058 0.942
45 H 0.065 0.935
46 H 0.028 0.972
Dipole moment (debyes) X Y Z Total
from point charges -6.317 29.087 2.221 29.847
hybrid contribution -0.593 -1.437 -0.776 1.738
sum -6.910 27.649 1.445 28.536
Atomic orbital electron populations
1.22161 0.76709 1.05175 1.03569 1.47815 1.08606 1.04172 1.72486
1.21164 0.87758 0.86271 0.75496 1.90711 1.16570 1.87807 1.51106
1.22387 0.91053 0.82908 1.05981 1.88050 1.33598 1.13853 1.95920
1.21590 0.92302 0.79452 1.04455 1.20205 0.96665 0.95154 0.92881
1.22446 0.98102 0.97538 0.99856 1.23045 0.92813 0.93275 0.95272
1.67172 1.28247 1.30393 0.99469 1.19361 0.90609 0.93436 0.85434
1.84760 1.59788 1.51722 1.34359 1.22219 0.97332 0.99190 1.00628
1.21753 0.96372 0.82709 0.95587 0.90454 1.23211 1.02205 0.95158
0.96490 1.21766 0.96034 0.94305 0.84913 1.44692 1.79454 1.02191
1.08484 1.19396 1.37862 0.85901 0.93786 0.90069 1.25662 1.02283
1.00189 0.97704 1.70018 1.55586 1.21772 1.12371 0.85084 0.78380
0.78184 0.77238 1.20884 1.21914 1.19767 1.21583 0.98361 0.84874
0.94673 0.91099 0.90896 0.86834 0.86025 0.86707 0.88347 0.89316
0.81525 0.79462 0.71999 0.82980 0.90654 0.89560 0.89879 1.00030
0.94175 0.93467 0.97230
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.13 9.03 127.77 1.15 2.28 16
2 N -0.60 -16.26 2.88 -815.97 -2.35 -18.62 16
3 C 0.50 14.25 7.75 87.66 0.68 14.93 16
4 O -0.58 -23.40 15.87 15.99 0.25 -23.14 16
5 C 0.06 0.87 4.97 71.24 0.35 1.23 16
6 O -0.39 -8.21 9.86 -129.94 -1.28 -9.49 16
7 C 0.10 1.09 6.11 71.24 0.44 1.52 16
8 C -0.04 -0.63 5.54 -19.69 -0.11 -0.74 16
9 C -0.16 -2.16 9.81 22.36 0.22 -1.94 16
10 C 0.11 1.74 11.18 84.63 0.95 2.68 16
11 N -0.53 -11.36 10.39 -308.95 -3.21 -14.57 16
12 C 0.29 5.84 7.74 84.79 0.66 6.50 16
13 O -0.50 -8.82 13.56 -89.95 -1.22 -10.04 16
14 C -0.17 -2.97 9.75 22.47 0.22 -2.75 16
15 C 0.14 5.17 3.35 46.18 0.15 5.32 16
16 H 0.08 3.27 6.99 -2.39 -0.02 3.25 16
17 C -0.13 -4.88 6.64 32.06 0.21 -4.67 16
18 C 0.16 7.71 5.89 86.93 0.51 8.22 16
19 N -0.62 -32.14 3.40 -691.55 -2.35 -34.49 16
20 C -0.24 -13.43 10.27 84.03 0.86 -12.56 16
21 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16
22 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16
23 N -0.95 -55.98 10.09 21.65 0.22 -55.76 16
24 Si 0.98 45.14 29.55 68.60 2.03 47.16 16
25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
26 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16
27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
28 C 0.13 5.54 6.88 86.73 0.60 6.14 16
29 H 0.07 1.11 7.87 -2.39 -0.02 1.09 16
30 H 0.07 1.48 6.24 -2.39 -0.01 1.47 16
31 H 0.11 0.90 6.44 -2.39 -0.02 0.89 16
32 H 0.12 0.95 7.40 -2.39 -0.02 0.93 16
33 H 0.12 1.07 8.11 -2.39 -0.02 1.05 16
34 H 0.10 0.49 8.10 -2.39 -0.02 0.47 16
35 H 0.09 0.58 8.10 -2.39 -0.02 0.56 16
36 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16
37 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16
38 H 0.42 2.69 9.06 -74.06 -0.67 2.02 16
39 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16
40 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16
41 H 0.09 2.85 6.24 -2.39 -0.01 2.84 16
42 H 0.08 4.59 5.87 -2.39 -0.01 4.58 16
43 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16
44 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16
45 H 0.05 1.82 6.83 -2.39 -0.02 1.80 16
46 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16
Total: -1.00 -86.02 379.31 -0.21 -86.24
By element:
Atomic # 1 Polarization: 9.45 SS G_CDS: 0.34 Total: 9.79 kcal
Atomic # 6 Polarization: 15.57 SS G_CDS: 7.36 Total: 22.93 kcal
Atomic # 7 Polarization: -115.75 SS G_CDS: -7.69 Total: -123.44 kcal
Atomic # 8 Polarization: -40.43 SS G_CDS: -2.25 Total: -42.68 kcal
Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal
Total: -86.02 -0.21 -86.24 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001698560897.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.407 kcal
(2) G-P(sol) polarization free energy of solvation -86.024 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.236 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds