Wall clock time and date at job start Tue Mar 31 2020 18:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35673 * 117.00097 * 2 1 4 4 C 1.38917 * 119.68670 * 180.25250 * 3 2 1 5 5 C 1.38375 * 119.11496 * 180.31504 * 4 3 2 6 6 C 1.50701 * 120.76366 * 179.71478 * 5 4 3 7 7 O 1.42902 * 109.46823 * 269.72491 * 6 5 4 8 8 C 1.42905 * 113.99862 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47129 * 179.97438 * 8 7 6 10 10 O 1.21285 * 119.99902 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00207 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00008 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46948 * 174.94227 * 12 11 9 14 14 N 1.46505 * 115.55024 * 80.38544 * 13 12 11 15 15 C 1.36942 * 119.99583 * 65.27855 * 14 13 12 16 16 H 1.08007 * 119.99964 * 354.96284 * 15 14 13 17 17 C 1.38809 * 119.99798 * 174.68484 * 15 14 13 18 18 N 1.31619 * 120.00146 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47378 * 89.99754 * 19 17 15 21 21 H 1.48498 * 109.47141 * 210.00161 * 19 17 15 22 22 H 1.48500 * 109.47218 * 329.99749 * 19 17 15 23 23 C 1.52999 * 117.50098 * 226.06177 * 13 12 11 24 24 C 1.53002 * 117.49982 * 294.71995 * 13 12 11 25 25 C 1.38834 * 118.48504 * 359.44364 * 5 4 3 26 26 C 1.38050 * 119.28450 * 0.26926 * 25 5 4 27 27 N 1.31960 * 120.83735 * 0.02562 * 26 25 5 28 28 H 1.08995 * 109.47256 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47016 * 300.00229 * 1 2 3 30 30 H 1.09008 * 109.47154 * 59.99523 * 1 2 3 31 31 H 1.08000 * 120.44619 * 0.03659 * 4 3 2 32 32 H 1.08994 * 109.47512 * 149.72374 * 6 5 4 33 33 H 1.09002 * 109.46876 * 29.72132 * 6 5 4 34 34 H 1.09002 * 109.46899 * 60.00198 * 8 7 6 35 35 H 1.09002 * 109.47026 * 300.00105 * 8 7 6 36 36 H 0.97001 * 119.99786 * 359.97438 * 11 9 8 37 37 H 1.08994 * 109.47255 * 54.94194 * 12 11 9 38 38 H 1.08999 * 109.46673 * 294.93754 * 12 11 9 39 39 H 0.96998 * 120.00497 * 245.27841 * 14 13 12 40 40 H 0.97000 * 119.99696 * 180.02562 * 18 17 15 41 41 H 1.08998 * 117.49974 * 215.00780 * 23 13 12 42 42 H 1.09000 * 117.49520 * 0.02562 * 23 13 12 43 43 H 1.09000 * 117.49687 * 359.97438 * 24 13 12 44 44 H 1.08995 * 117.49858 * 144.97063 * 24 13 12 45 45 H 1.07994 * 120.35703 * 180.25198 * 25 5 4 46 46 H 1.08011 * 119.57810 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2739 -0.0053 5 6 4.0485 2.5130 0.0014 6 6 5.5512 2.6269 0.0024 7 8 6.0253 2.6622 1.3500 8 6 7.4458 2.7692 1.4639 9 6 7.8322 2.7985 2.9202 10 8 6.9756 2.7337 3.7763 11 7 9.1297 2.8968 3.2712 12 6 9.5054 2.9248 4.6870 13 6 11.0304 2.9129 4.8103 14 7 11.6905 4.2057 4.6121 15 6 11.4741 5.2277 5.4977 16 1 10.7555 5.1083 6.2950 17 6 12.1827 6.4149 5.3739 18 7 13.0621 6.5585 4.4052 19 14 11.8881 7.8087 6.5822 20 1 12.8119 7.6669 7.7362 21 1 12.1341 9.1086 5.9079 22 1 10.4841 7.7584 7.0632 23 6 11.6495 1.9521 5.8273 24 6 11.7683 1.6619 4.3291 25 6 3.2505 3.6491 0.0014 26 6 1.8771 3.5096 0.0004 27 7 1.3186 2.3141 0.0000 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.0229 0.3695 -0.0100 32 1 5.8467 3.5420 -0.5108 33 1 5.9811 1.7671 -0.5115 34 1 7.7808 3.6872 0.9809 35 1 7.9146 1.9122 0.9803 36 1 9.8148 2.9483 2.5865 37 1 9.0934 2.0498 5.1895 38 1 9.1105 3.8292 5.1498 39 1 12.2807 4.3379 3.8538 40 1 13.5574 7.3880 4.3190 41 1 12.5478 2.2819 6.3492 42 1 10.9704 1.3281 6.4083 43 1 11.1673 0.8473 3.9251 44 1 12.7446 1.8009 3.8648 45 1 3.6994 4.6314 0.0024 46 1 1.2518 4.3903 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699655454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:49 Heat of formation + Delta-G solvation = -36.118333 kcal Electronic energy + Delta-G solvation = -27394.211285 eV Core-core repulsion = 23286.191343 eV Total energy + Delta-G solvation = -4108.019942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.94828 -39.61815 -38.49609 -37.79311 -37.15824 -33.78711 -33.48359 -33.04086 -31.05410 -29.75317 -29.17660 -27.76597 -26.70290 -25.32283 -23.92167 -23.75103 -22.09039 -21.93451 -20.26673 -19.22707 -18.36500 -17.53209 -17.23151 -17.04665 -16.80043 -16.36755 -16.26793 -16.14442 -15.54164 -15.14428 -14.94586 -14.63706 -14.28334 -14.21380 -13.90529 -13.68632 -13.58841 -13.11882 -12.96878 -12.73789 -12.45806 -12.06348 -12.01356 -11.91103 -11.84141 -11.51437 -11.03784 -10.98559 -10.89550 -10.33780 -10.27838 -10.15614 -10.00671 -9.96951 -9.74653 -9.65775 -9.33747 -8.89300 -8.81381 -8.66516 -7.10658 -5.87085 -3.17724 0.76792 0.90434 2.71883 2.83347 2.92146 3.39429 3.45563 3.46948 3.47455 3.90846 4.03727 4.36203 4.46989 4.55328 4.60282 4.75216 4.79266 4.86776 4.94571 4.99306 5.02090 5.05787 5.06511 5.14644 5.19566 5.26485 5.30428 5.41215 5.45509 5.56569 5.60526 5.78271 5.97091 6.06369 6.07139 6.19174 6.40647 6.53108 6.62499 6.69047 6.75009 6.84530 6.91139 7.52036 7.66702 7.80571 8.31074 8.48137 9.42560 9.95300 10.30662 11.34695 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.001911 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.499372 B =14652.200220 C =15512.584036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.317 3.683 4 C -0.167 4.167 5 C -0.009 4.009 6 C 0.099 3.901 7 O -0.354 6.354 8 C 0.044 3.956 9 C 0.509 3.491 10 O -0.529 6.529 11 N -0.709 5.709 12 C 0.149 3.851 13 C 0.127 3.873 14 N -0.689 5.689 15 C -0.239 4.239 16 H 0.073 0.927 17 C -0.010 4.010 18 N -0.931 5.931 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C -0.186 4.186 24 C -0.185 4.185 25 C -0.187 4.187 26 C 0.137 3.863 27 N -0.538 5.538 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.401 0.599 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.388 0.612 40 H 0.256 0.744 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.141 0.859 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 -11.813 -14.049 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.138 3.862 4 C -0.188 4.188 5 C -0.017 4.017 6 C 0.023 3.977 7 O -0.272 6.272 8 C -0.036 4.036 9 C 0.294 3.706 10 O -0.405 6.405 11 N -0.361 5.361 12 C 0.024 3.976 13 C 0.033 3.967 14 N -0.328 5.328 15 C -0.369 4.369 16 H 0.091 0.909 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.227 4.227 24 C -0.223 4.223 25 C -0.207 4.207 26 C -0.018 4.018 27 N -0.262 5.262 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.159 0.841 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.450 -12.057 -13.129 26.383 hybrid contribution 1.352 1.151 -0.103 1.779 sum -18.098 -10.906 -13.232 24.931 Atomic orbital electron populations 1.22860 0.77157 1.02959 1.02467 1.86239 1.22972 1.24479 1.87868 1.19766 0.89221 0.84758 0.92465 1.20947 0.92054 0.99100 1.06684 1.19732 0.94959 0.92377 0.94601 1.21346 0.89526 1.01911 0.84952 1.88094 1.19733 1.95061 1.24316 1.22270 0.82992 1.02715 0.95633 1.20081 0.82998 0.77451 0.90104 1.90724 1.49333 1.48684 1.51740 1.45787 1.06668 1.74081 1.09605 1.21267 0.94198 1.01866 0.80263 1.20170 0.89473 0.84575 1.02519 1.41780 1.54071 1.06216 1.30771 1.19176 1.18054 0.92428 1.07274 0.90936 1.24758 0.98609 0.98416 0.98787 1.69656 1.28387 1.26638 1.33232 0.86178 0.77808 0.81740 0.80424 1.21613 1.21756 1.20586 1.23371 1.03783 1.03911 0.91622 1.23079 1.02009 0.98967 0.98236 1.21954 0.94730 0.99598 1.04434 1.22397 0.92712 0.93642 0.93086 1.67299 1.41087 0.98915 1.18921 0.88605 0.92230 0.92340 0.83909 0.91237 0.91486 0.89885 0.90174 0.76481 0.92015 0.90548 0.77748 0.93422 0.88558 0.89896 0.89471 0.88976 0.84120 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.28 10.48 -18.72 -0.20 -3.48 16 3 C 0.32 3.60 7.49 -17.12 -0.13 3.47 16 4 C -0.17 -1.77 9.74 -39.28 -0.38 -2.15 16 5 C -0.01 -0.09 5.54 -104.35 -0.58 -0.67 16 6 C 0.10 0.88 6.11 36.01 0.22 1.10 16 7 O -0.35 -4.61 9.86 -55.14 -0.54 -5.16 16 8 C 0.04 0.49 6.42 36.00 0.23 0.72 16 9 C 0.51 8.08 7.91 -10.99 -0.09 7.99 16 10 O -0.53 -10.85 16.49 -14.36 -0.24 -11.09 16 11 N -0.71 -10.81 5.51 -60.30 -0.33 -11.14 16 12 C 0.15 2.67 5.73 -4.04 -0.02 2.64 16 13 C 0.13 2.34 2.15 -131.81 -0.28 2.06 16 14 N -0.69 -15.99 5.49 -47.22 -0.26 -16.25 16 15 C -0.24 -6.32 9.56 -15.06 -0.14 -6.46 16 16 H 0.07 1.91 7.77 -52.48 -0.41 1.51 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 19 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.19 -3.16 10.11 -26.70 -0.27 -3.43 16 24 C -0.19 -2.82 10.14 -26.69 -0.27 -3.09 16 25 C -0.19 -1.72 9.81 -39.43 -0.39 -2.10 16 26 C 0.14 1.25 11.18 -17.57 -0.20 1.06 16 27 N -0.54 -5.93 9.22 -13.33 -0.12 -6.05 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.41 8.10 -51.92 -0.42 -0.01 16 31 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 5.27 8.48 -40.82 -0.35 4.92 16 37 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 38 H 0.08 1.60 7.73 -51.93 -0.40 1.20 16 39 H 0.39 9.52 8.04 -40.82 -0.33 9.19 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 42 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -34.56 400.53 -8.24 -42.80 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.94 Total: 11.38 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.35 Total: 2.14 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.01 Total: -59.63 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.98 Total: -19.72 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.56 -8.24 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699655454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.684 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds