Wall clock time and date at job start Tue Mar 31 2020 19:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35662 * 117.00002 * 2 1 4 4 C 1.39299 * 119.61773 * 180.02562 * 3 2 1 5 5 C 1.38322 * 119.30573 * 179.72320 * 4 3 2 6 6 C 1.38790 * 118.55889 * 0.02562 * 5 4 3 7 7 C 1.39124 * 119.18968 * 359.97438 * 6 5 4 8 8 C 1.48149 * 119.69236 * 180.02562 * 7 6 5 9 9 O 1.21521 * 119.99977 * 338.33567 * 8 7 6 10 10 N 1.34778 * 120.00231 * 158.33425 * 8 7 6 11 11 C 1.46923 * 120.63028 * 359.97438 * 10 8 7 12 12 C 1.52768 * 109.00893 * 233.58667 * 11 10 8 13 13 C 1.53045 * 109.37847 * 305.58741 * 12 11 10 14 14 C 1.53044 * 109.53904 * 61.23968 * 13 12 11 15 15 C 1.53001 * 109.52056 * 178.66839 * 14 13 12 16 16 O 1.42898 * 109.46608 * 184.85568 * 15 14 13 17 17 N 1.46496 * 109.49486 * 58.58928 * 14 13 12 18 18 C 1.36937 * 119.99615 * 180.16293 * 17 14 13 19 19 H 1.07997 * 120.00219 * 359.97438 * 18 17 14 20 20 C 1.38814 * 119.99828 * 179.97438 * 18 17 14 21 21 N 1.31616 * 120.00323 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00012 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47053 * 60.00358 * 22 20 18 24 24 H 1.48499 * 109.47239 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47183 * 300.00448 * 22 20 18 26 26 C 1.46925 * 120.63020 * 180.25781 * 10 8 7 27 27 N 1.31896 * 119.61770 * 359.72636 * 3 2 1 28 28 H 1.08995 * 109.47170 * 299.99426 * 1 2 3 29 29 H 1.08998 * 109.47204 * 60.00293 * 1 2 3 30 30 H 1.09001 * 109.47004 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.34422 * 359.70513 * 4 3 2 32 32 H 1.07995 * 120.72049 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.40481 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.58354 * 353.41652 * 11 10 8 35 35 H 1.08991 * 109.58816 * 113.84019 * 11 10 8 36 36 H 1.08993 * 109.56529 * 185.55588 * 12 11 10 37 37 H 1.09001 * 109.38546 * 65.50715 * 12 11 10 38 38 H 1.09001 * 109.45586 * 301.21876 * 13 12 11 39 39 H 1.08993 * 109.45737 * 181.26458 * 13 12 11 40 40 H 1.09001 * 109.47089 * 304.85110 * 15 14 13 41 41 H 1.09000 * 109.47284 * 64.85370 * 15 14 13 42 42 H 0.96700 * 113.99958 * 179.97438 * 16 15 14 43 43 H 0.97004 * 120.00495 * 0.15256 * 17 14 13 44 44 H 0.96992 * 120.00774 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.58407 * 246.15761 * 26 10 8 46 46 H 1.08997 * 109.58750 * 6.43981 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4364 1.2724 -0.0005 5 6 4.0576 2.5082 -0.0064 6 6 3.2665 3.6485 -0.0110 7 6 1.8818 3.5137 -0.0101 8 6 1.0266 4.7234 -0.0155 9 8 1.4746 5.7859 0.3680 10 7 -0.2482 4.6456 -0.4459 11 6 -0.8040 3.3683 -0.9131 12 6 -1.3925 3.5628 -2.3094 13 6 -2.4005 4.7140 -2.2798 14 6 -1.6902 6.0058 -1.8688 15 6 -2.6914 7.1628 -1.8715 16 8 -2.0058 8.3865 -1.5983 17 7 -0.6096 6.2921 -2.8156 18 6 0.1717 7.4040 -2.6470 19 1 -0.0090 8.0700 -1.8163 20 6 1.1960 7.6750 -3.5437 21 7 1.4160 6.8636 -4.5564 22 14 2.2614 9.1921 -3.3141 23 1 2.9460 9.1217 -1.9982 24 1 3.2753 9.2536 -4.3974 25 1 1.4095 10.4075 -3.3645 26 6 -1.1068 5.8378 -0.4625 27 7 1.3191 2.3101 -0.0055 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0240 0.3663 0.0038 32 1 5.1349 2.5842 -0.0073 33 1 3.7202 4.6286 -0.0151 34 1 -0.0137 2.6186 -0.9524 35 1 -1.5884 3.0399 -0.2315 36 1 -1.8942 2.6480 -2.6247 37 1 -0.5914 3.7986 -3.0101 38 1 -3.1884 4.4883 -1.5612 39 1 -2.8378 4.8393 -3.2703 40 1 -3.1715 7.2256 -2.8481 41 1 -3.4474 6.9909 -1.1053 42 1 -2.5800 9.1644 -1.5848 43 1 -0.4474 5.6940 -3.5619 44 1 2.1315 7.0531 -5.1833 45 1 -1.9165 5.7150 0.2568 46 1 -0.5169 6.7166 -0.2020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700242375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:10 Heat of formation + Delta-G solvation = -35.625341 kcal Electronic energy + Delta-G solvation = -31212.246185 eV Core-core repulsion = 27104.247620 eV Total energy + Delta-G solvation = -4107.998565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.97742 -39.51861 -38.15163 -37.23644 -35.71263 -33.87021 -32.74686 -31.98963 -31.06097 -30.70542 -28.53615 -27.55652 -25.90560 -25.17626 -23.64579 -23.40166 -22.91106 -21.57011 -20.23980 -18.50307 -17.91125 -17.51345 -17.04276 -16.29462 -16.13826 -16.04632 -15.80440 -15.52295 -14.94826 -14.56675 -14.25232 -14.21521 -13.90062 -13.60381 -13.42206 -13.19659 -13.11598 -13.01229 -12.60043 -12.27513 -12.16900 -11.97149 -11.82381 -11.58913 -11.32292 -11.09887 -10.79681 -10.66408 -10.55355 -10.52784 -10.13623 -10.05165 -9.73412 -9.68473 -9.45005 -8.94665 -8.91506 -8.70969 -8.55122 -7.95977 -6.75951 -5.51759 -2.77065 0.77266 1.23147 2.93844 3.11862 3.40762 3.62871 3.64827 3.70499 3.93005 4.18676 4.78698 4.81971 4.87414 4.93224 4.97855 5.13141 5.18440 5.23796 5.35184 5.38207 5.41158 5.50945 5.53970 5.58200 5.66994 5.90234 5.92918 5.93411 5.95984 6.08060 6.12065 6.14210 6.20827 6.27790 6.31724 6.43928 6.48714 6.67512 6.86450 6.90827 7.06635 7.24486 7.60548 7.99219 8.21321 8.41854 8.66269 8.71273 9.79489 10.27327 10.63326 11.71919 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.004992 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.305834 B = 5607.269949 C = 6892.560070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.309 3.691 4 C -0.174 4.174 5 C -0.045 4.045 6 C -0.145 4.145 7 C 0.135 3.865 8 C 0.572 3.428 9 O -0.521 6.521 10 N -0.569 5.569 11 C 0.078 3.922 12 C -0.134 4.134 13 C -0.115 4.115 14 C 0.189 3.811 15 C 0.076 3.924 16 O -0.536 6.536 17 N -0.702 5.702 18 C -0.194 4.194 19 H 0.091 0.909 20 C -0.025 4.025 21 N -0.948 5.948 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.290 1.290 26 C 0.108 3.892 27 N -0.508 5.508 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.134 0.866 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.023 0.977 42 H 0.351 0.649 43 H 0.381 0.619 44 H 0.249 0.751 45 H 0.047 0.953 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.752 -14.144 9.288 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.215 6.215 3 C 0.129 3.871 4 C -0.195 4.195 5 C -0.071 4.071 6 C -0.166 4.166 7 C 0.000 4.000 8 C 0.357 3.643 9 O -0.396 6.396 10 N -0.299 5.299 11 C -0.045 4.045 12 C -0.172 4.172 13 C -0.153 4.153 14 C 0.095 3.905 15 C -0.006 4.006 16 O -0.338 6.338 17 N -0.342 5.342 18 C -0.325 4.325 19 H 0.109 0.891 20 C -0.218 4.218 21 N -0.599 5.599 22 Si 0.734 3.266 23 H -0.214 1.214 24 H -0.224 1.224 25 H -0.217 1.217 26 C -0.016 4.016 27 N -0.235 5.235 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.196 0.804 43 H 0.216 0.784 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.708 -14.128 9.568 17.701 hybrid contribution 0.610 1.137 -0.464 1.371 sum -4.098 -12.991 9.105 16.385 Atomic orbital electron populations 1.22973 0.77255 1.03061 1.02733 1.86231 1.22889 1.24245 1.88101 1.19943 0.89552 0.84653 0.92963 1.21199 0.91901 0.99681 1.06733 1.21441 1.00864 0.90817 0.93931 1.22024 0.93067 1.00999 1.00498 1.21036 0.92554 0.90178 0.96275 1.17650 0.81429 0.86405 0.78834 1.90798 1.72389 1.28343 1.48053 1.47543 1.10789 1.10183 1.61429 1.22666 1.00602 0.87193 0.93992 1.21843 0.99554 0.97654 0.98182 1.21635 0.97542 0.94784 1.01381 1.19942 0.89249 0.90669 0.90646 1.22741 0.94058 0.86587 0.97173 1.86968 1.36707 1.15776 1.94363 1.42410 1.34186 1.28672 1.28930 1.19480 1.06081 0.98954 1.07987 0.89100 1.24650 0.99965 0.98936 0.98240 1.69649 1.34613 1.38731 1.16932 0.86311 0.80249 0.83369 0.76641 1.21394 1.22405 1.21704 1.22200 0.93306 0.88581 0.97559 1.67306 1.38898 0.98408 1.18908 0.92155 0.91929 0.88621 0.83888 0.83425 0.83119 0.85013 0.92762 0.91792 0.90474 0.92121 0.91711 0.94393 0.95874 0.80443 0.78404 0.94178 0.93527 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.31 101.05 1.04 1.36 16 2 O -0.31 -3.61 10.48 -18.69 -0.20 -3.81 16 3 C 0.31 4.11 7.49 -17.13 -0.13 3.98 16 4 C -0.17 -2.01 10.05 -39.16 -0.39 -2.40 16 5 C -0.05 -0.53 10.16 -39.35 -0.40 -0.93 16 6 C -0.14 -2.26 9.62 -39.05 -0.38 -2.64 16 7 C 0.14 2.38 6.45 -83.02 -0.54 1.84 16 8 C 0.57 11.94 7.62 -12.19 -0.09 11.85 16 9 O -0.52 -12.66 15.93 5.35 0.09 -12.58 16 10 N -0.57 -10.87 2.90 -174.04 -0.50 -11.38 16 11 C 0.08 1.21 5.96 -3.93 -0.02 1.19 16 12 C -0.13 -2.07 5.90 -26.83 -0.16 -2.23 16 13 C -0.12 -1.81 4.77 -26.69 -0.13 -1.93 16 14 C 0.19 3.66 0.68 -131.70 -0.09 3.57 16 15 C 0.08 1.34 6.09 37.16 0.23 1.57 16 16 O -0.54 -10.52 10.05 -35.23 -0.35 -10.87 16 17 N -0.70 -17.32 4.75 -47.13 -0.22 -17.54 16 18 C -0.19 -5.48 8.07 -15.06 -0.12 -5.60 16 19 H 0.09 2.64 5.27 -52.49 -0.28 2.37 16 20 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 21 N -0.95 -29.52 13.06 55.49 0.72 -28.79 16 22 Si 0.90 24.30 29.55 -169.99 -5.02 19.28 16 23 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 25 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 26 C 0.11 2.13 4.91 -3.72 -0.02 2.11 16 27 N -0.51 -7.67 5.28 -9.87 -0.05 -7.72 16 28 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 29 H 0.06 0.59 7.21 -51.93 -0.37 0.21 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.15 2.45 7.79 -52.49 -0.41 2.04 16 34 H 0.13 2.03 2.96 -79.26 -0.23 1.80 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.47 6.75 -51.93 -0.35 1.12 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.35 5.11 9.12 45.56 0.42 5.52 16 43 H 0.38 10.14 6.43 -40.82 -0.26 9.87 16 44 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 2.45 5.82 -51.93 -0.30 2.15 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -35.95 365.90 -6.90 -42.85 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.58 Total: 14.14 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -1.29 Total: 10.89 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.06 Total: -65.43 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.46 Total: -27.25 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.02 Total: 19.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.95 -6.90 -42.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700242375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.229 kcal (2) G-P(sol) polarization free energy of solvation -35.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds