Wall clock time and date at job start Tue Mar 31 2020 18:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35660 * 117.00454 * 2 1 4 4 C 1.39286 * 119.62131 * 180.02562 * 3 2 1 5 5 C 1.38328 * 119.30568 * 179.97438 * 4 3 2 6 6 C 1.38780 * 118.56491 * 0.02562 * 5 4 3 7 7 C 1.39129 * 119.18175 * 359.97438 * 6 5 4 8 8 C 1.48155 * 119.68701 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99592 * 350.43952 * 8 7 6 10 10 N 1.34771 * 120.00185 * 170.44374 * 8 7 6 11 11 C 1.46930 * 120.62982 * 352.12636 * 10 8 7 12 12 C 1.53199 * 108.77165 * 233.58705 * 11 10 8 13 13 C 1.53041 * 109.31123 * 305.35944 * 12 11 10 14 14 O 1.42898 * 109.46005 * 301.36200 * 13 12 11 15 15 C 1.52998 * 109.45861 * 181.38734 * 13 12 11 16 16 N 1.46507 * 109.46972 * 185.00206 * 15 13 12 17 17 C 1.36940 * 119.99778 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99757 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99635 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00044 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.47114 * 90.00074 * 21 19 17 23 23 H 1.48498 * 109.47054 * 209.99927 * 21 19 17 24 24 H 1.48503 * 109.47351 * 330.00296 * 21 19 17 25 25 C 1.53042 * 109.53571 * 61.36796 * 13 12 11 26 26 C 1.46923 * 120.63282 * 172.09873 * 10 8 7 27 27 N 1.31904 * 119.61490 * 0.24965 * 3 2 1 28 28 H 1.08996 * 109.47056 * 59.99613 * 1 2 3 29 29 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46610 * 300.00349 * 1 2 3 31 31 H 1.08005 * 120.34619 * 359.97438 * 4 3 2 32 32 H 1.08011 * 120.71685 * 179.97438 * 5 4 3 33 33 H 1.07992 * 120.40680 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.58951 * 113.79679 * 11 10 8 35 35 H 1.09001 * 109.58752 * 353.36625 * 11 10 8 36 36 H 1.09003 * 109.49359 * 185.41458 * 12 11 10 37 37 H 1.08991 * 109.50117 * 65.31439 * 12 11 10 38 38 H 0.96708 * 113.99930 * 180.02562 * 14 13 12 39 39 H 1.08999 * 109.47551 * 304.99963 * 15 13 12 40 40 H 1.09003 * 109.47088 * 65.00269 * 15 13 12 41 41 H 0.96996 * 119.99589 * 359.97438 * 16 15 13 42 42 H 0.97005 * 119.99433 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.49487 * 58.58834 * 25 13 12 44 44 H 1.09005 * 109.49451 * 178.67970 * 25 13 12 45 45 H 1.09001 * 109.58729 * 246.20310 * 26 10 8 46 46 H 1.08994 * 109.58744 * 6.62609 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2723 -0.0005 5 6 4.0577 2.5082 -0.0011 6 6 3.2667 3.6485 -0.0005 7 6 1.8820 3.5136 0.0000 8 6 1.0269 4.7235 0.0012 9 8 1.5238 5.8184 0.1765 10 7 -0.3020 4.6097 -0.1920 11 6 -0.8951 3.3211 -0.5750 12 6 -1.7343 3.5215 -1.8409 13 6 -2.7548 4.6364 -1.6005 14 8 -3.5880 4.2884 -0.4929 15 6 -3.6178 4.8158 -2.8511 16 7 -4.5137 5.9601 -2.6660 17 6 -5.3858 6.3146 -3.6605 18 1 -5.4129 5.7509 -4.5813 19 6 -6.2343 7.3992 -3.4854 20 7 -7.0722 7.7402 -4.4414 21 14 -6.1868 8.3746 -1.8931 22 1 -5.2039 9.4808 -2.0192 23 1 -7.5330 8.9377 -1.6173 24 1 -5.7858 7.4811 -0.7769 25 6 -2.0212 5.9444 -1.2952 26 6 -1.1853 5.7715 -0.0232 27 7 1.3193 2.3101 0.0050 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 4.0240 0.3661 -0.0005 32 1 5.1351 2.5841 -0.0011 33 1 3.7205 4.6285 -0.0005 34 1 -1.5317 2.9576 0.2317 35 1 -0.1032 2.5985 -0.7722 36 1 -2.2570 2.5956 -2.0812 37 1 -1.0824 3.7974 -2.6697 38 1 -4.2603 4.9510 -0.2831 39 1 -2.9753 4.9931 -3.7136 40 1 -4.2085 3.9149 -3.0171 41 1 -4.4895 6.4662 -1.8389 42 1 -7.6654 8.4979 -4.3189 43 1 -1.3667 6.1976 -2.1292 44 1 -2.7481 6.7431 -1.1472 45 1 -1.8455 5.6079 0.8286 46 1 -0.5849 6.6657 0.1438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700307013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:43 Heat of formation + Delta-G solvation = -42.148480 kcal Electronic energy + Delta-G solvation = -29935.174994 eV Core-core repulsion = 25826.893565 eV Total energy + Delta-G solvation = -4108.281429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45710 -40.06605 -38.79006 -37.87972 -35.74425 -34.18751 -33.30622 -31.93932 -31.46440 -31.02285 -30.55743 -27.91689 -27.01177 -25.11655 -23.82174 -23.39345 -22.96794 -21.72219 -20.79801 -19.69218 -18.34757 -18.04714 -17.83291 -16.63716 -16.46291 -16.25449 -16.09500 -15.91422 -15.35208 -14.89520 -14.67489 -14.45336 -14.24154 -14.15306 -13.94089 -13.83933 -13.41363 -13.20212 -13.02317 -12.64963 -12.59923 -12.35476 -12.12945 -11.95649 -11.64178 -11.56802 -11.44367 -11.22092 -11.09936 -10.93664 -10.65871 -10.47582 -10.31074 -10.28748 -9.66144 -9.53262 -9.22960 -8.99317 -8.97674 -8.58924 -7.32529 -5.82800 -3.19743 0.25698 0.79660 2.48109 2.62396 2.79918 3.28202 3.32929 3.40173 3.43132 3.64732 4.29056 4.43663 4.49519 4.52062 4.56288 4.74531 4.85457 4.90048 4.93585 4.99943 5.00405 5.09145 5.13784 5.32944 5.39070 5.44692 5.47970 5.51152 5.57734 5.68400 5.69346 5.85434 5.90153 5.95757 5.97308 6.09533 6.20215 6.29139 6.47673 6.57894 6.59225 6.80108 7.14608 7.33599 7.86839 7.94674 7.96239 8.34996 9.12107 9.84210 10.02183 11.35501 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.002915 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.213700 B = 9601.981933 C =10371.511769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.316 3.684 4 C -0.168 4.168 5 C -0.045 4.045 6 C -0.147 4.147 7 C 0.124 3.876 8 C 0.567 3.433 9 O -0.536 6.536 10 N -0.583 5.583 11 C 0.078 3.922 12 C -0.119 4.119 13 C 0.125 3.875 14 O -0.559 6.559 15 C 0.133 3.867 16 N -0.753 5.753 17 C -0.246 4.246 18 H 0.090 0.910 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.279 1.279 25 C -0.157 4.157 26 C 0.113 3.887 27 N -0.506 5.506 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.072 0.928 35 H 0.141 0.859 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.378 0.622 39 H 0.034 0.966 40 H 0.037 0.963 41 H 0.357 0.643 42 H 0.260 0.740 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.129 -15.340 11.483 29.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.135 3.865 4 C -0.189 4.189 5 C -0.070 4.070 6 C -0.169 4.169 7 C -0.012 4.012 8 C 0.353 3.647 9 O -0.413 6.413 10 N -0.313 5.313 11 C -0.044 4.044 12 C -0.157 4.157 13 C 0.084 3.916 14 O -0.365 6.365 15 C 0.006 3.994 16 N -0.401 5.401 17 C -0.376 4.376 18 H 0.108 0.892 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.195 4.195 26 C -0.008 4.008 27 N -0.233 5.233 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.226 0.774 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.191 0.809 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.803 -15.602 11.362 29.119 hybrid contribution -0.126 1.477 0.918 1.744 sum 21.677 -14.125 12.280 28.639 Atomic orbital electron populations 1.23079 0.76578 1.03686 1.02932 1.86262 1.23347 1.23877 1.87633 1.20025 0.89609 0.84753 0.92092 1.21311 0.91973 0.99951 1.05638 1.21481 1.01014 0.90760 0.93761 1.21984 0.92851 1.00987 1.01044 1.20864 0.92314 0.90158 0.97881 1.17881 0.81957 0.87171 0.77713 1.90784 1.73313 1.26378 1.50787 1.47953 1.05527 1.12010 1.65843 1.22973 0.99446 0.85398 0.96562 1.21907 0.96592 0.98924 0.98311 1.21402 0.89964 0.93212 0.87070 1.86396 1.49442 1.49946 1.50732 1.21309 0.92080 0.91389 0.94635 1.42701 1.44890 1.34121 1.18341 1.19030 1.11582 1.10785 0.96153 0.89177 1.24686 0.98390 0.98538 0.97444 1.69700 1.25782 1.29858 1.32631 0.86569 0.77296 0.80521 0.84133 1.20964 1.21575 1.20523 1.22540 0.99845 0.98873 0.98274 1.21665 0.92348 0.88724 0.98109 1.67356 1.38550 0.98474 1.18954 0.91756 0.88155 0.91830 0.83514 0.83185 0.83064 0.90947 0.84264 0.89970 0.90616 0.77381 0.94823 0.94503 0.80896 0.92962 0.90354 0.89953 0.90756 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.20 101.05 1.03 1.25 16 2 O -0.30 -2.65 10.47 -18.68 -0.20 -2.85 16 3 C 0.32 2.91 7.49 -17.13 -0.13 2.78 16 4 C -0.17 -1.18 10.05 -39.16 -0.39 -1.57 16 5 C -0.04 -0.29 10.16 -39.35 -0.40 -0.69 16 6 C -0.15 -1.34 9.62 -39.05 -0.38 -1.71 16 7 C 0.12 1.41 6.57 -83.02 -0.55 0.87 16 8 C 0.57 7.89 7.65 -12.19 -0.09 7.79 16 9 O -0.54 -8.70 15.79 5.35 0.08 -8.62 16 10 N -0.58 -7.83 2.97 -173.77 -0.52 -8.35 16 11 C 0.08 0.94 5.63 -3.70 -0.02 0.92 16 12 C -0.12 -1.52 5.11 -26.61 -0.14 -1.66 16 13 C 0.12 1.89 0.71 -90.58 -0.06 1.83 16 14 O -0.56 -8.60 11.70 -35.23 -0.41 -9.01 16 15 C 0.13 2.52 5.43 -4.04 -0.02 2.50 16 16 N -0.75 -17.16 4.87 -59.90 -0.29 -17.45 16 17 C -0.25 -6.85 10.47 -15.06 -0.16 -7.01 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 20 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 21 Si 0.88 21.59 27.74 -169.99 -4.71 16.87 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.19 6.52 56.52 0.37 -5.83 16 25 C -0.16 -2.35 4.88 -26.61 -0.13 -2.48 16 26 C 0.11 1.57 6.20 -3.71 -0.02 1.55 16 27 N -0.51 -5.32 5.13 -9.87 -0.05 -5.37 16 28 H 0.06 0.46 7.19 -51.93 -0.37 0.08 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 32 H 0.15 0.46 8.06 -52.48 -0.42 0.04 16 33 H 0.15 1.30 7.66 -52.49 -0.40 0.90 16 34 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 35 H 0.14 1.55 2.84 -83.29 -0.24 1.32 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.38 5.69 8.19 45.56 0.37 6.07 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.36 7.75 3.41 -40.82 -0.14 7.62 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.32 6.53 -51.93 -0.34 0.98 16 45 H 0.07 0.99 7.81 -51.93 -0.41 0.59 16 46 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -33.74 366.93 -7.03 -40.77 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.69 Total: 12.35 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.56 Total: 4.43 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.08 Total: -59.48 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.52 Total: -20.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.74 -7.03 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700307013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.377 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds