Wall clock time and date at job start Tue Mar 31 2020 18:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35660 * 117.00454 * 2 1 4 4 C 1.39286 * 119.62131 * 180.02562 * 3 2 1 5 5 C 1.38328 * 119.30568 * 179.97438 * 4 3 2 6 6 C 1.38780 * 118.56491 * 0.02562 * 5 4 3 7 7 C 1.39129 * 119.18175 * 359.97438 * 6 5 4 8 8 C 1.48155 * 119.68701 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99592 * 350.43952 * 8 7 6 10 10 N 1.34771 * 120.00185 * 170.44374 * 8 7 6 11 11 C 1.46930 * 120.62982 * 352.12636 * 10 8 7 12 12 C 1.53199 * 108.77165 * 233.58705 * 11 10 8 13 13 C 1.53041 * 109.31123 * 305.35944 * 12 11 10 14 14 O 1.42898 * 109.46005 * 301.36200 * 13 12 11 15 15 C 1.52998 * 109.45861 * 181.38734 * 13 12 11 16 16 N 1.46507 * 109.46972 * 185.00206 * 15 13 12 17 17 C 1.36940 * 119.99778 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99997 * 359.97438 * 17 16 15 19 19 C 1.38811 * 119.99757 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99635 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00044 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.47114 * 90.00074 * 21 19 17 23 23 H 1.48498 * 109.47054 * 209.99927 * 21 19 17 24 24 H 1.48503 * 109.47351 * 330.00296 * 21 19 17 25 25 C 1.53042 * 109.53571 * 61.36796 * 13 12 11 26 26 C 1.46923 * 120.63282 * 172.09873 * 10 8 7 27 27 N 1.31904 * 119.61490 * 0.24965 * 3 2 1 28 28 H 1.08996 * 109.47056 * 59.99613 * 1 2 3 29 29 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46610 * 300.00349 * 1 2 3 31 31 H 1.08005 * 120.34619 * 359.97438 * 4 3 2 32 32 H 1.08011 * 120.71685 * 179.97438 * 5 4 3 33 33 H 1.07992 * 120.40680 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.58951 * 113.79679 * 11 10 8 35 35 H 1.09001 * 109.58752 * 353.36625 * 11 10 8 36 36 H 1.09003 * 109.49359 * 185.41458 * 12 11 10 37 37 H 1.08991 * 109.50117 * 65.31439 * 12 11 10 38 38 H 0.96708 * 113.99930 * 180.02562 * 14 13 12 39 39 H 1.08999 * 109.47551 * 304.99963 * 15 13 12 40 40 H 1.09003 * 109.47088 * 65.00269 * 15 13 12 41 41 H 0.96996 * 119.99589 * 359.97438 * 16 15 13 42 42 H 0.97005 * 119.99433 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.49487 * 58.58834 * 25 13 12 44 44 H 1.09005 * 109.49451 * 178.67970 * 25 13 12 45 45 H 1.09001 * 109.58729 * 246.20310 * 26 10 8 46 46 H 1.08994 * 109.58744 * 6.62609 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4364 1.2723 -0.0005 5 6 4.0577 2.5082 -0.0011 6 6 3.2667 3.6485 -0.0005 7 6 1.8820 3.5136 0.0000 8 6 1.0269 4.7235 0.0012 9 8 1.5238 5.8184 0.1765 10 7 -0.3020 4.6097 -0.1920 11 6 -0.8951 3.3211 -0.5750 12 6 -1.7343 3.5215 -1.8409 13 6 -2.7548 4.6364 -1.6005 14 8 -3.5880 4.2884 -0.4929 15 6 -3.6178 4.8158 -2.8511 16 7 -4.5137 5.9601 -2.6660 17 6 -5.3858 6.3146 -3.6605 18 1 -5.4129 5.7509 -4.5813 19 6 -6.2343 7.3992 -3.4854 20 7 -7.0722 7.7402 -4.4414 21 14 -6.1868 8.3746 -1.8931 22 1 -5.2039 9.4808 -2.0192 23 1 -7.5330 8.9377 -1.6173 24 1 -5.7858 7.4811 -0.7769 25 6 -2.0212 5.9444 -1.2952 26 6 -1.1853 5.7715 -0.0232 27 7 1.3193 2.3101 0.0050 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 4.0240 0.3661 -0.0005 32 1 5.1351 2.5841 -0.0011 33 1 3.7205 4.6285 -0.0005 34 1 -1.5317 2.9576 0.2317 35 1 -0.1032 2.5985 -0.7722 36 1 -2.2570 2.5956 -2.0812 37 1 -1.0824 3.7974 -2.6697 38 1 -4.2603 4.9510 -0.2831 39 1 -2.9753 4.9931 -3.7136 40 1 -4.2085 3.9149 -3.0171 41 1 -4.4895 6.4662 -1.8389 42 1 -7.6654 8.4979 -4.3189 43 1 -1.3667 6.1976 -2.1292 44 1 -2.7481 6.7431 -1.1472 45 1 -1.8455 5.6079 0.8286 46 1 -0.5849 6.6657 0.1438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700307013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:42 Heat of formation + Delta-G solvation = -68.036714 kcal Electronic energy + Delta-G solvation = -29936.297592 eV Core-core repulsion = 25826.893565 eV Total energy + Delta-G solvation = -4109.404027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.23916 -41.04089 -39.87316 -38.62973 -37.01327 -35.92106 -34.05875 -33.59965 -32.48848 -32.31595 -31.58402 -28.87030 -28.15474 -26.08820 -25.27025 -24.27872 -23.82199 -23.24599 -21.91088 -20.76944 -20.03028 -19.03599 -18.79990 -17.41124 -17.27935 -17.14246 -17.02064 -16.92984 -16.72135 -16.31372 -16.10058 -15.70359 -15.18269 -15.14429 -14.89116 -14.82442 -14.69686 -14.52039 -14.30261 -14.11138 -13.53594 -13.48354 -13.22301 -13.11102 -12.86670 -12.75940 -12.66406 -12.39798 -12.28936 -12.14991 -12.10726 -11.93440 -11.69195 -11.48995 -11.05037 -11.01527 -10.84262 -10.08061 -9.81603 -9.53690 -9.37226 -8.06240 -5.41519 -0.45064 0.19445 1.33562 1.39596 1.46107 1.58961 1.80709 2.07162 2.44874 2.69663 2.85764 3.17035 3.29512 3.46323 3.53312 3.74230 3.78426 3.87898 3.90690 4.00643 4.12255 4.21846 4.27807 4.40397 4.45955 4.46716 4.49204 4.55706 4.70416 4.75778 4.77831 4.83788 4.92875 4.93374 4.98560 5.06018 5.08535 5.12341 5.29426 5.35164 5.52322 5.70739 6.12076 6.15896 6.26723 6.51409 6.66760 6.95214 7.02335 7.74946 7.94798 9.15166 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.002915 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.213700 B = 9601.981933 C =10371.511769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.300 3.700 4 C -0.156 4.156 5 C -0.032 4.032 6 C -0.148 4.148 7 C 0.095 3.905 8 C 0.562 3.438 9 O -0.568 6.568 10 N -0.586 5.586 11 C 0.087 3.913 12 C -0.116 4.116 13 C 0.136 3.864 14 O -0.557 6.557 15 C 0.132 3.868 16 N -0.751 5.751 17 C -0.237 4.237 18 H 0.054 0.946 19 C -0.063 4.063 20 N -0.983 5.983 21 Si 0.953 3.047 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.242 1.242 25 C -0.152 4.152 26 C 0.118 3.882 27 N -0.517 5.517 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.176 0.824 32 H 0.191 0.809 33 H 0.152 0.848 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.380 0.620 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.366 0.634 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.578 -16.978 13.479 32.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.119 3.881 4 C -0.176 4.176 5 C -0.056 4.056 6 C -0.169 4.169 7 C -0.039 4.039 8 C 0.350 3.650 9 O -0.448 6.448 10 N -0.316 5.316 11 C -0.035 4.035 12 C -0.155 4.155 13 C 0.094 3.906 14 O -0.364 6.364 15 C 0.005 3.995 16 N -0.399 5.399 17 C -0.368 4.368 18 H 0.072 0.928 19 C -0.254 4.254 20 N -0.633 5.633 21 Si 0.780 3.220 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.166 1.166 25 C -0.191 4.191 26 C -0.004 4.004 27 N -0.245 5.245 28 H 0.079 0.921 29 H 0.141 0.859 30 H 0.075 0.925 31 H 0.193 0.807 32 H 0.208 0.792 33 H 0.169 0.831 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.229 0.771 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.282 -17.289 13.382 32.674 hybrid contribution -0.818 1.849 0.212 2.033 sum 23.464 -15.440 13.594 31.205 Atomic orbital electron populations 1.23210 0.75942 1.05062 1.02434 1.86268 1.24064 1.23608 1.87673 1.20372 0.90649 0.84462 0.92602 1.21737 0.91210 1.01355 1.03334 1.21906 1.02668 0.89328 0.91742 1.22157 0.92175 1.02188 1.00423 1.20580 0.92812 0.89542 1.00986 1.18320 0.82093 0.87765 0.76782 1.90750 1.73876 1.27822 1.52329 1.48048 1.05632 1.12170 1.65787 1.23018 0.99567 0.85085 0.95810 1.21936 0.96108 0.98505 0.98944 1.21299 0.89623 0.94394 0.85245 1.86411 1.49529 1.50085 1.50349 1.21458 0.91754 0.89597 0.96678 1.42606 1.44533 1.35230 1.17492 1.18982 1.11907 1.09946 0.95981 0.92814 1.25545 0.98293 1.00078 1.01506 1.69892 1.27241 1.30816 1.35393 0.85450 0.76932 0.79176 0.80486 1.20542 1.22254 1.16619 1.22465 0.99592 0.98365 0.98638 1.21561 0.92274 0.89005 0.97573 1.67074 1.39274 0.98550 1.19638 0.92079 0.85939 0.92459 0.80652 0.79212 0.83069 0.91179 0.82981 0.88729 0.90411 0.77107 0.95192 0.95098 0.79940 0.93252 0.91188 0.90756 0.90002 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.20 113.37 1.16 1.50 16 2 O -0.31 -4.70 10.47 -89.76 -0.94 -5.64 16 3 C 0.30 4.85 7.49 84.93 0.64 5.49 16 4 C -0.16 -1.63 10.05 22.54 0.23 -1.40 16 5 C -0.03 -0.29 10.16 22.42 0.23 -0.06 16 6 C -0.15 -2.40 9.62 22.61 0.22 -2.19 16 7 C 0.10 2.07 6.57 41.84 0.27 2.35 16 8 C 0.56 15.48 7.65 86.88 0.66 16.14 16 9 O -0.57 -18.58 15.79 -3.77 -0.06 -18.64 16 10 N -0.59 -15.36 2.97 -821.97 -2.44 -17.80 16 11 C 0.09 1.98 5.63 86.36 0.49 2.47 16 12 C -0.12 -2.83 5.11 30.67 0.16 -2.68 16 13 C 0.14 3.97 0.71 -10.77 -0.01 3.97 16 14 O -0.56 -16.15 11.70 -148.98 -1.74 -17.89 16 15 C 0.13 4.93 5.43 86.38 0.47 5.40 16 16 N -0.75 -33.87 4.87 -343.44 -1.67 -35.55 16 17 C -0.24 -13.46 10.47 84.03 0.88 -12.58 16 18 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 19 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 20 N -0.98 -63.05 13.97 21.65 0.30 -62.74 16 21 Si 0.95 44.34 27.74 68.60 1.90 46.24 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 25 C -0.15 -4.44 4.88 30.67 0.15 -4.29 16 26 C 0.12 3.19 6.20 86.36 0.54 3.72 16 27 N -0.52 -10.14 5.13 -298.20 -1.53 -11.66 16 28 H 0.06 0.77 7.19 -2.39 -0.02 0.76 16 29 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 32 H 0.19 0.19 8.06 -2.90 -0.02 0.17 16 33 H 0.15 2.41 7.66 -2.91 -0.02 2.39 16 34 H 0.07 1.65 7.81 -2.39 -0.02 1.63 16 35 H 0.15 3.20 2.84 -64.30 -0.18 3.02 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.38 10.63 8.19 -74.05 -0.61 10.03 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.37 15.27 3.41 -92.71 -0.32 14.96 16 42 H 0.26 15.78 8.31 -92.70 -0.77 15.00 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.07 2.28 6.53 -2.38 -0.02 2.27 16 45 H 0.08 2.08 7.81 -2.39 -0.02 2.06 16 46 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 Total: -1.00 -74.93 366.93 0.23 -74.70 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.13 Total: 34.36 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.54 Total: 14.63 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -5.34 Total: -127.75 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -2.74 Total: -42.18 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.90 Total: 46.24 kcal Total: -74.93 0.23 -74.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700307013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.665 kcal (2) G-P(sol) polarization free energy of solvation -74.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds