Wall clock time and date at job start Tue Mar 31 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35525 * 116.99933 * 2 1 4 4 C 1.38822 * 120.89621 * 359.97438 * 3 2 1 5 5 C 1.38711 * 119.19721 * 180.02562 * 4 3 2 6 6 O 1.35524 * 119.46904 * 180.02562 * 5 4 3 7 7 N 1.32587 * 121.05861 * 359.74154 * 5 4 3 8 8 C 1.31617 * 121.97054 * 0.53530 * 7 5 4 9 9 C 1.39538 * 120.67066 * 359.46706 * 8 7 5 10 10 C 1.47350 * 120.55335 * 180.23946 * 9 8 7 11 11 O 1.21612 * 120.00203 * 158.10882 * 10 9 8 12 12 N 1.34773 * 119.99851 * 338.10210 * 10 9 8 13 13 C 1.47422 * 125.64861 * 188.08204 * 12 10 9 14 14 C 1.54697 * 104.94302 * 204.07710 * 13 12 10 15 15 C 1.55159 * 101.67189 * 323.27181 * 14 13 12 16 16 C 1.47026 * 125.64977 * 8.38617 * 12 10 9 17 17 H 1.08997 * 109.87797 * 59.49030 * 16 12 10 18 18 C 1.52994 * 109.88481 * 298.32227 * 16 12 10 19 19 N 1.46499 * 109.47253 * 173.29743 * 18 16 12 20 20 C 1.46509 * 119.99627 * 271.16278 * 19 18 16 21 21 C 1.36933 * 120.00648 * 91.15941 * 19 18 16 22 22 H 1.08007 * 119.99251 * 14.84612 * 21 19 18 23 23 C 1.38809 * 120.00464 * 194.84388 * 21 19 18 24 24 N 1.31616 * 119.99936 * 21.42731 * 23 21 19 25 25 Si 1.86795 * 120.00157 * 201.41862 * 23 21 19 26 26 H 1.48508 * 109.46784 * 94.99415 * 25 23 21 27 27 H 1.48497 * 109.47217 * 214.99269 * 25 23 21 28 28 H 1.48500 * 109.47555 * 334.99973 * 25 23 21 29 29 H 1.09005 * 109.46954 * 300.00319 * 1 2 3 30 30 H 1.09000 * 109.46965 * 59.99758 * 1 2 3 31 31 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.39610 * 0.02562 * 4 3 2 33 33 H 0.96704 * 113.99775 * 89.99659 * 6 5 4 34 34 H 1.08002 * 119.66299 * 179.75294 * 8 7 5 35 35 H 1.09001 * 110.36352 * 323.00319 * 13 12 10 36 36 H 1.09000 * 110.37271 * 85.32051 * 13 12 10 37 37 H 1.09002 * 111.09636 * 205.10866 * 14 13 12 38 38 H 1.08992 * 110.81511 * 81.31901 * 14 13 12 39 39 H 1.08996 * 110.71948 * 276.97490 * 15 14 13 40 40 H 1.09000 * 110.87109 * 153.77237 * 15 14 13 41 41 H 1.09007 * 109.47049 * 293.29510 * 18 16 12 42 42 H 1.09002 * 109.47003 * 53.29226 * 18 16 12 43 43 H 1.08991 * 109.47000 * 91.39807 * 20 19 18 44 44 H 1.09004 * 109.46832 * 211.39882 * 20 19 18 45 45 H 1.09002 * 109.46781 * 331.39937 * 20 19 18 46 46 H 0.96991 * 120.00712 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3065 2.3835 -0.0005 5 6 1.9726 3.6002 -0.0011 6 8 1.2578 4.7516 -0.0010 7 7 3.2973 3.6548 0.0041 8 6 4.0396 2.5680 -0.0006 9 6 3.4500 1.3033 0.0000 10 6 4.2835 0.0882 0.0001 11 8 3.8218 -0.9659 0.3932 12 7 5.5576 0.1450 -0.4357 13 6 6.4454 -1.0125 -0.6482 14 6 7.8788 -0.4426 -0.5314 15 6 7.7176 0.9509 -1.1944 16 6 6.2944 1.3722 -0.7717 17 1 6.3445 2.0248 0.0998 18 6 5.6008 2.0954 -1.9279 19 7 6.2458 3.3919 -2.1499 20 6 5.7811 4.5754 -1.4219 21 6 7.2828 3.4978 -3.0378 22 1 7.4719 2.7030 -3.7443 23 6 8.0909 4.6264 -3.0300 24 7 8.1565 5.3813 -1.9539 25 14 9.0855 5.0736 -4.5466 26 1 8.3281 6.0558 -5.3633 27 1 10.3807 5.6694 -4.1312 28 1 9.3382 3.8513 -5.3511 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2270 2.3513 -0.0005 33 1 1.0506 5.0859 0.8824 34 1 5.1161 2.6559 -0.0002 35 1 6.2736 -1.7681 0.1184 36 1 6.2872 -1.4349 -1.6405 37 1 8.5914 -1.0570 -1.0819 38 1 8.1735 -0.3465 0.5135 39 1 7.7904 0.8727 -2.2791 40 1 8.4577 1.6523 -0.8092 41 1 5.6776 1.4918 -2.8323 42 1 4.5502 2.2495 -1.6820 43 1 6.3501 4.6803 -0.4983 44 1 5.9248 5.4617 -2.0399 45 1 4.7227 4.4645 -1.1860 46 1 8.7214 6.1697 -1.9481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700359490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:24 Heat of formation + Delta-G solvation = 7.169485 kcal Electronic energy + Delta-G solvation = -31098.815653 eV Core-core repulsion = 26992.672812 eV Total energy + Delta-G solvation = -4106.142842 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.32676 -39.62644 -38.81296 -37.32162 -36.88397 -35.21284 -32.33070 -31.68263 -31.27873 -30.09182 -28.97724 -27.63461 -25.96684 -25.51823 -24.28552 -23.14045 -22.41789 -21.20966 -20.44769 -19.39020 -19.11578 -17.77834 -17.10752 -17.02744 -16.60589 -16.12985 -15.73395 -15.24920 -15.12078 -14.91592 -14.58768 -14.32620 -14.29791 -13.62210 -13.47456 -13.17227 -12.91828 -12.82739 -12.49384 -12.36109 -12.03103 -11.89148 -11.76138 -11.71867 -11.56791 -11.03910 -10.99230 -10.81136 -10.78225 -10.44337 -10.36784 -10.06760 -9.95751 -9.82304 -9.77338 -9.18177 -8.96632 -8.73112 -8.55607 -8.25072 -6.84938 -5.75278 -3.11738 0.65118 1.26077 2.90175 2.99060 3.19971 3.39126 3.47073 3.47773 3.51377 3.86710 4.46147 4.51993 4.59267 4.75110 4.89041 4.92891 4.99048 5.02223 5.16723 5.26095 5.27648 5.36244 5.41087 5.50586 5.56511 5.62181 5.73546 5.79165 5.85434 5.95993 6.13178 6.17671 6.30485 6.38432 6.53000 6.56278 6.75937 6.84630 7.02527 7.06188 7.40466 7.51856 7.73269 7.80735 7.86041 7.95089 8.34413 8.43302 9.20799 9.85260 10.31173 11.30058 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.004762 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.915908 B = 5878.495908 C = 7676.462302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.278 6.278 3 C 0.236 3.764 4 C -0.304 4.304 5 C 0.370 3.630 6 O -0.480 6.480 7 N -0.520 5.520 8 C 0.197 3.803 9 C -0.248 4.248 10 C 0.587 3.413 11 O -0.535 6.535 12 N -0.610 5.610 13 C 0.110 3.890 14 C -0.139 4.139 15 C -0.100 4.100 16 C 0.091 3.909 17 H 0.078 0.922 18 C 0.127 3.873 19 N -0.593 5.593 20 C 0.139 3.861 21 C -0.255 4.255 22 H 0.070 0.930 23 C 0.006 3.994 24 N -0.897 5.897 25 Si 0.896 3.104 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.280 1.280 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.403 0.597 34 H 0.203 0.797 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.018 0.982 44 H 0.050 0.950 45 H 0.037 0.963 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.709 -8.440 6.469 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.187 6.187 3 C 0.180 3.820 4 C -0.326 4.326 5 C 0.192 3.808 6 O -0.287 6.287 7 N -0.242 5.242 8 C 0.041 3.959 9 C -0.254 4.254 10 C 0.376 3.624 11 O -0.413 6.413 12 N -0.345 5.345 13 C -0.012 4.012 14 C -0.177 4.177 15 C -0.138 4.138 16 C -0.015 4.015 17 H 0.095 0.905 18 C -0.002 4.002 19 N -0.315 5.315 20 C -0.005 4.005 21 C -0.384 4.384 22 H 0.088 0.912 23 C -0.193 4.193 24 N -0.542 5.542 25 Si 0.726 3.274 26 H -0.217 1.217 27 H -0.220 1.220 28 H -0.205 1.205 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.165 0.835 33 H 0.262 0.738 34 H 0.218 0.782 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.542 -8.274 6.131 15.468 hybrid contribution -0.080 -0.009 -0.398 0.406 sum -11.622 -8.283 5.734 15.380 Atomic orbital electron populations 1.23214 0.78207 1.04496 1.01571 1.86314 1.21262 1.25077 1.86027 1.19033 0.90611 0.84637 0.87690 1.21954 1.01780 0.91709 1.17168 1.19166 0.87012 0.84815 0.89770 1.84709 1.71304 1.38811 1.33910 1.67462 1.05733 1.32676 1.18318 1.24262 1.02523 0.84734 0.84381 1.20361 0.91164 0.96134 1.17761 1.17220 0.80193 0.87538 0.77412 1.90771 1.72213 1.30986 1.47342 1.48584 1.11318 1.09180 1.65372 1.22131 0.89044 0.88907 1.01141 1.22833 0.95395 0.97921 1.01555 1.22452 0.94791 0.94869 1.01702 1.23138 0.93870 0.84975 0.99508 0.90487 1.21752 0.94809 0.88394 0.95287 1.44074 1.37468 1.01647 1.48335 1.21247 0.94513 0.89058 0.95660 1.19178 1.06332 1.04155 1.08746 0.91169 1.24776 0.98235 0.99377 0.96923 1.70158 1.40967 1.17701 1.25354 0.86377 0.79150 0.78453 0.83419 1.21674 1.21981 1.20548 0.92315 0.92262 0.87726 0.83544 0.73804 0.78177 0.90772 0.91646 0.90143 0.91115 0.89999 0.89394 0.92686 0.93096 0.96338 0.93158 0.94528 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.84 101.05 0.99 1.17 16 2 O -0.28 -4.04 8.96 -38.10 -0.34 -4.38 16 3 C 0.24 3.58 6.71 -38.36 -0.26 3.32 16 4 C -0.30 -3.93 9.02 -39.19 -0.35 -4.28 16 5 C 0.37 5.35 7.73 -17.05 -0.13 5.22 16 6 O -0.48 -5.82 13.54 -18.27 -0.25 -6.07 16 7 N -0.52 -8.88 8.19 -13.70 -0.11 -8.99 16 8 C 0.20 3.40 6.18 -17.16 -0.11 3.30 16 9 C -0.25 -4.21 5.10 -104.70 -0.53 -4.75 16 10 C 0.59 10.62 7.55 -12.55 -0.09 10.52 16 11 O -0.54 -10.75 15.82 -14.56 -0.23 -10.98 16 12 N -0.61 -10.15 3.07 -164.44 -0.50 -10.66 16 13 C 0.11 1.57 6.94 -2.64 -0.02 1.55 16 14 C -0.14 -1.81 7.07 -24.70 -0.17 -1.98 16 15 C -0.10 -1.65 5.65 -24.90 -0.14 -1.79 16 16 C 0.09 1.58 2.40 -66.95 -0.16 1.42 16 17 H 0.08 1.41 6.09 -51.93 -0.32 1.10 16 18 C 0.13 2.50 4.44 -4.05 -0.02 2.48 16 19 N -0.59 -13.87 2.88 -181.11 -0.52 -14.39 16 20 C 0.14 3.33 7.91 59.85 0.47 3.80 16 21 C -0.25 -6.50 8.56 -15.06 -0.13 -6.63 16 22 H 0.07 1.76 7.79 -52.48 -0.41 1.35 16 23 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 24 N -0.90 -24.93 10.78 55.49 0.60 -24.33 16 25 Si 0.90 21.17 29.60 -169.99 -5.03 16.13 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.06 0.42 7.71 -51.93 -0.40 0.02 16 30 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.15 1.42 6.45 -52.49 -0.34 1.09 16 33 H 0.40 2.64 9.06 45.56 0.41 3.05 16 34 H 0.20 3.69 2.11 -52.49 -0.11 3.58 16 35 H 0.07 1.04 7.97 -51.93 -0.41 0.62 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.43 7.29 -51.93 -0.38 1.05 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.05 1.11 7.84 -51.92 -0.41 0.70 16 42 H 0.05 1.01 3.73 -53.43 -0.20 0.81 16 43 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 44 H 0.05 1.34 6.75 -51.93 -0.35 0.99 16 45 H 0.04 0.80 4.43 -51.93 -0.23 0.57 16 46 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -32.73 355.84 -6.96 -39.69 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.19 Total: 5.21 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: -0.74 Total: 13.41 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.54 Total: -58.37 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.82 Total: -21.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.73 -6.96 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700359490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.855 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds