Wall clock time and date at job start Tue Mar 31 2020 18:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35525 * 116.99933 * 2 1 4 4 C 1.38822 * 120.89621 * 359.97438 * 3 2 1 5 5 C 1.38711 * 119.19721 * 180.02562 * 4 3 2 6 6 O 1.35524 * 119.46904 * 180.02562 * 5 4 3 7 7 N 1.32587 * 121.05861 * 359.74154 * 5 4 3 8 8 C 1.31617 * 121.97054 * 0.53530 * 7 5 4 9 9 C 1.39538 * 120.67066 * 359.46706 * 8 7 5 10 10 C 1.47350 * 120.55335 * 180.23946 * 9 8 7 11 11 O 1.21612 * 120.00203 * 158.10882 * 10 9 8 12 12 N 1.34773 * 119.99851 * 338.10210 * 10 9 8 13 13 C 1.47422 * 125.64861 * 188.08204 * 12 10 9 14 14 C 1.54697 * 104.94302 * 204.07710 * 13 12 10 15 15 C 1.55159 * 101.67189 * 323.27181 * 14 13 12 16 16 C 1.47026 * 125.64977 * 8.38617 * 12 10 9 17 17 H 1.08997 * 109.87797 * 59.49030 * 16 12 10 18 18 C 1.52994 * 109.88481 * 298.32227 * 16 12 10 19 19 N 1.46499 * 109.47253 * 173.29743 * 18 16 12 20 20 C 1.46509 * 119.99627 * 271.16278 * 19 18 16 21 21 C 1.36933 * 120.00648 * 91.15941 * 19 18 16 22 22 H 1.08007 * 119.99251 * 14.84612 * 21 19 18 23 23 C 1.38809 * 120.00464 * 194.84388 * 21 19 18 24 24 N 1.31616 * 119.99936 * 21.42731 * 23 21 19 25 25 Si 1.86795 * 120.00157 * 201.41862 * 23 21 19 26 26 H 1.48508 * 109.46784 * 94.99415 * 25 23 21 27 27 H 1.48497 * 109.47217 * 214.99269 * 25 23 21 28 28 H 1.48500 * 109.47555 * 334.99973 * 25 23 21 29 29 H 1.09005 * 109.46954 * 300.00319 * 1 2 3 30 30 H 1.09000 * 109.46965 * 59.99758 * 1 2 3 31 31 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 32 32 H 1.07993 * 120.39610 * 0.02562 * 4 3 2 33 33 H 0.96704 * 113.99775 * 89.99659 * 6 5 4 34 34 H 1.08002 * 119.66299 * 179.75294 * 8 7 5 35 35 H 1.09001 * 110.36352 * 323.00319 * 13 12 10 36 36 H 1.09000 * 110.37271 * 85.32051 * 13 12 10 37 37 H 1.09002 * 111.09636 * 205.10866 * 14 13 12 38 38 H 1.08992 * 110.81511 * 81.31901 * 14 13 12 39 39 H 1.08996 * 110.71948 * 276.97490 * 15 14 13 40 40 H 1.09000 * 110.87109 * 153.77237 * 15 14 13 41 41 H 1.09007 * 109.47049 * 293.29510 * 18 16 12 42 42 H 1.09002 * 109.47003 * 53.29226 * 18 16 12 43 43 H 1.08991 * 109.47000 * 91.39807 * 20 19 18 44 44 H 1.09004 * 109.46832 * 211.39882 * 20 19 18 45 45 H 1.09002 * 109.46781 * 331.39937 * 20 19 18 46 46 H 0.96991 * 120.00712 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3065 2.3835 -0.0005 5 6 1.9726 3.6002 -0.0011 6 8 1.2578 4.7516 -0.0010 7 7 3.2973 3.6548 0.0041 8 6 4.0396 2.5680 -0.0006 9 6 3.4500 1.3033 0.0000 10 6 4.2835 0.0882 0.0001 11 8 3.8218 -0.9659 0.3932 12 7 5.5576 0.1450 -0.4357 13 6 6.4454 -1.0125 -0.6482 14 6 7.8788 -0.4426 -0.5314 15 6 7.7176 0.9509 -1.1944 16 6 6.2944 1.3722 -0.7717 17 1 6.3445 2.0248 0.0998 18 6 5.6008 2.0954 -1.9279 19 7 6.2458 3.3919 -2.1499 20 6 5.7811 4.5754 -1.4219 21 6 7.2828 3.4978 -3.0378 22 1 7.4719 2.7030 -3.7443 23 6 8.0909 4.6264 -3.0300 24 7 8.1565 5.3813 -1.9539 25 14 9.0855 5.0736 -4.5466 26 1 8.3281 6.0558 -5.3633 27 1 10.3807 5.6694 -4.1312 28 1 9.3382 3.8513 -5.3511 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2270 2.3513 -0.0005 33 1 1.0506 5.0859 0.8824 34 1 5.1161 2.6559 -0.0002 35 1 6.2736 -1.7681 0.1184 36 1 6.2872 -1.4349 -1.6405 37 1 8.5914 -1.0570 -1.0819 38 1 8.1735 -0.3465 0.5135 39 1 7.7904 0.8727 -2.2791 40 1 8.4577 1.6523 -0.8092 41 1 5.6776 1.4918 -2.8323 42 1 4.5502 2.2495 -1.6820 43 1 6.3501 4.6803 -0.4983 44 1 5.9248 5.4617 -2.0399 45 1 4.7227 4.4645 -1.1860 46 1 8.7214 6.1697 -1.9481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700359490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:23 Heat of formation + Delta-G solvation = -17.067768 kcal Electronic energy + Delta-G solvation = -31099.866660 eV Core-core repulsion = 26992.672812 eV Total energy + Delta-G solvation = -4107.193848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.55533 -40.87577 -39.87998 -38.76567 -37.97436 -36.92513 -33.81353 -33.12978 -32.60102 -31.40410 -30.43430 -28.47789 -27.88884 -27.01056 -25.68078 -24.31186 -23.77434 -22.72558 -21.86521 -20.67651 -20.20937 -19.09058 -18.66609 -18.18577 -17.96613 -17.33441 -16.96827 -16.68519 -16.36793 -16.16549 -16.12116 -15.60210 -15.37332 -15.29532 -14.98085 -14.60646 -14.33957 -14.17781 -13.80164 -13.70995 -13.49787 -13.09562 -12.98589 -12.91974 -12.72070 -12.64793 -12.51898 -12.45294 -12.20536 -12.03484 -11.89898 -11.76385 -11.60277 -11.44707 -11.18578 -10.52607 -10.46332 -10.11421 -9.99687 -9.67514 -8.78179 -7.77017 -5.14677 -0.52831 0.10486 1.49767 1.53718 1.60160 1.64056 1.89848 2.00803 2.42657 2.56765 2.66741 3.26953 3.35349 3.39696 3.66483 3.69165 3.77559 3.84787 3.97940 4.03571 4.19347 4.25520 4.31560 4.33782 4.38840 4.42858 4.56504 4.62069 4.67887 4.71382 4.87561 4.91491 5.06440 5.08455 5.11774 5.21342 5.23839 5.36996 5.49264 5.51521 5.71622 5.81899 6.07125 6.32594 6.44363 6.56079 6.80043 7.06460 7.19780 7.91069 8.34077 9.27399 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011989 B = 0.004762 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.915908 B = 5878.495908 C = 7676.462302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.302 6.302 3 C 0.235 3.765 4 C -0.284 4.284 5 C 0.370 3.630 6 O -0.483 6.483 7 N -0.550 5.550 8 C 0.192 3.808 9 C -0.268 4.268 10 C 0.585 3.415 11 O -0.559 6.559 12 N -0.609 5.609 13 C 0.105 3.895 14 C -0.121 4.121 15 C -0.099 4.099 16 C 0.104 3.896 17 H 0.067 0.933 18 C 0.132 3.868 19 N -0.603 5.603 20 C 0.163 3.837 21 C -0.250 4.250 22 H 0.075 0.925 23 C -0.044 4.044 24 N -0.928 5.928 25 Si 0.952 3.048 26 H -0.297 1.297 27 H -0.299 1.299 28 H -0.267 1.267 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.185 0.815 33 H 0.427 0.573 34 H 0.184 0.816 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.056 0.944 43 H -0.003 1.003 44 H 0.016 0.984 45 H 0.057 0.943 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 -9.814 6.255 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.211 6.211 3 C 0.179 3.821 4 C -0.306 4.306 5 C 0.194 3.806 6 O -0.294 6.294 7 N -0.273 5.273 8 C 0.035 3.965 9 C -0.275 4.275 10 C 0.375 3.625 11 O -0.439 6.439 12 N -0.342 5.342 13 C -0.016 4.016 14 C -0.159 4.159 15 C -0.137 4.137 16 C -0.002 4.002 17 H 0.085 0.915 18 C 0.004 3.996 19 N -0.326 5.326 20 C 0.018 3.982 21 C -0.379 4.379 22 H 0.093 0.907 23 C -0.240 4.240 24 N -0.575 5.575 25 Si 0.782 3.218 26 H -0.225 1.225 27 H -0.226 1.226 28 H -0.192 1.192 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.202 0.798 33 H 0.290 0.710 34 H 0.200 0.800 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.015 0.985 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.173 -9.682 5.926 17.389 hybrid contribution 0.208 0.379 -0.281 0.515 sum -12.965 -9.303 5.645 16.926 Atomic orbital electron populations 1.23615 0.75306 1.06369 1.03292 1.86290 1.24301 1.24878 1.85622 1.19131 0.90172 0.85730 0.87107 1.22190 1.03369 0.90079 1.14965 1.19334 0.86339 0.86077 0.88893 1.84666 1.70583 1.38048 1.36126 1.67348 1.07433 1.32907 1.19620 1.23872 1.01868 0.85178 0.85575 1.20356 0.92373 0.95372 1.19356 1.17437 0.80451 0.87627 0.76980 1.90742 1.72694 1.31857 1.48647 1.48581 1.11319 1.09508 1.64803 1.22337 0.89080 0.88286 1.01916 1.22790 0.95355 0.95661 1.02089 1.22347 0.93426 0.96686 1.01250 1.22750 0.94155 0.85184 0.98072 0.91511 1.21757 0.95008 0.86902 0.95908 1.44149 1.37157 1.02964 1.48321 1.20917 0.95286 0.88113 0.93861 1.19435 1.05956 1.03892 1.08667 0.90715 1.25397 0.99873 0.99807 0.98923 1.70294 1.42243 1.18082 1.26871 0.85466 0.77456 0.78183 0.80662 1.22457 1.22575 1.19168 0.90237 0.90740 0.86013 0.79817 0.70952 0.79962 0.90126 0.90681 0.87341 0.90313 0.90929 0.91393 0.92998 0.92694 0.98473 0.96547 0.92535 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.23 16 2 O -0.30 -8.18 8.96 -69.33 -0.62 -8.80 16 3 C 0.23 6.74 6.71 23.06 0.15 6.90 16 4 C -0.28 -6.58 9.02 22.52 0.20 -6.38 16 5 C 0.37 10.06 7.73 84.69 0.65 10.71 16 6 O -0.48 -10.54 13.54 -88.28 -1.20 -11.73 16 7 N -0.55 -18.64 8.19 -310.05 -2.54 -21.18 16 8 C 0.19 6.68 6.18 85.04 0.53 7.20 16 9 C -0.27 -9.03 5.10 -19.92 -0.10 -9.13 16 10 C 0.59 21.00 7.55 86.64 0.65 21.66 16 11 O -0.56 -22.21 15.82 14.89 0.24 -21.97 16 12 N -0.61 -20.01 3.07 -792.42 -2.43 -22.44 16 13 C 0.11 2.84 6.94 86.78 0.60 3.44 16 14 C -0.12 -2.94 7.07 31.91 0.23 -2.71 16 15 C -0.10 -3.24 5.65 31.78 0.18 -3.06 16 16 C 0.10 3.66 2.40 45.34 0.11 3.77 16 17 H 0.07 2.55 6.09 -2.39 -0.01 2.53 16 18 C 0.13 5.25 4.44 86.38 0.38 5.64 16 19 N -0.60 -28.79 2.88 -726.92 -2.09 -30.88 16 20 C 0.16 8.05 7.91 127.77 1.01 9.07 16 21 C -0.25 -12.87 8.56 84.03 0.72 -12.15 16 22 H 0.08 3.74 7.79 -2.91 -0.02 3.71 16 23 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 24 N -0.93 -53.19 10.78 21.65 0.23 -52.96 16 25 Si 0.95 44.04 29.60 68.60 2.03 46.07 16 26 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 29 H 0.08 0.83 7.71 -2.38 -0.02 0.81 16 30 H 0.07 0.86 7.71 -2.39 -0.02 0.84 16 31 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.18 2.76 6.45 -2.91 -0.02 2.74 16 33 H 0.43 4.45 9.06 -74.05 -0.67 3.78 16 34 H 0.18 6.95 2.11 -2.91 -0.01 6.94 16 35 H 0.08 2.11 7.97 -2.39 -0.02 2.09 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 2.50 7.29 -2.39 -0.02 2.49 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.05 2.08 7.84 -2.38 -0.02 2.06 16 42 H 0.06 2.20 3.73 -3.80 -0.01 2.18 16 43 H 0.00 -0.16 7.74 -2.39 -0.02 -0.18 16 44 H 0.02 0.88 6.75 -2.38 -0.02 0.87 16 45 H 0.06 2.55 4.43 -2.39 -0.01 2.54 16 46 H 0.25 13.86 8.31 -92.72 -0.77 13.09 16 Total: -1.00 -72.00 355.84 0.84 -71.15 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.37 Total: 18.53 kcal Atomic # 6 Polarization: 27.35 SS G_CDS: 6.85 Total: 34.21 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -6.83 Total: -127.47 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.58 Total: -42.50 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.00 0.84 -71.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700359490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.087 kcal (2) G-P(sol) polarization free energy of solvation -71.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds