Wall clock time and date at job start Tue Mar 31 2020 18:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99724 * 2 1 4 4 C 1.53003 * 109.46993 * 269.99985 * 3 2 1 5 5 O 1.42893 * 109.47220 * 65.00377 * 4 3 2 6 6 C 1.42904 * 113.99976 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47228 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.47099 * 64.99592 * 7 6 5 9 9 C 1.36938 * 119.99856 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99742 * 180.02562 * 9 8 7 12 12 N 1.31626 * 119.99836 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00159 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47096 * 90.00158 * 13 11 9 15 15 H 1.48504 * 109.46867 * 209.99851 * 13 11 9 16 16 H 1.48499 * 109.46974 * 329.99800 * 13 11 9 17 17 C 1.34773 * 120.00031 * 179.97438 * 2 1 3 18 18 O 1.21530 * 119.99868 * 184.32368 * 17 2 1 19 19 C 1.48035 * 120.00044 * 4.32343 * 17 2 1 20 20 C 1.39556 * 119.99654 * 147.91491 * 19 17 2 21 21 C 1.37823 * 120.00087 * 180.02562 * 20 19 17 22 22 C 1.39557 * 119.99460 * 0.02562 * 21 20 19 23 23 C 1.48035 * 119.99836 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00194 * 180.02562 * 23 22 21 25 25 O 1.21531 * 120.00167 * 0.02562 * 23 22 21 26 26 C 1.39557 * 120.00353 * 0.25525 * 22 21 20 27 27 C 1.37814 * 119.99687 * 359.48913 * 26 22 21 28 28 H 1.08996 * 109.47668 * 274.61239 * 1 2 3 29 29 H 1.08998 * 109.47235 * 34.62265 * 1 2 3 30 30 H 1.09006 * 109.46886 * 154.61486 * 1 2 3 31 31 H 1.09002 * 109.47155 * 30.00189 * 3 2 1 32 32 H 1.09001 * 109.46978 * 149.99891 * 3 2 1 33 33 H 1.09004 * 109.46500 * 184.99950 * 4 3 2 34 34 H 1.08995 * 109.46926 * 304.99492 * 4 3 2 35 35 H 1.09001 * 109.47017 * 299.99540 * 6 5 4 36 36 H 1.08997 * 109.47324 * 59.99882 * 6 5 4 37 37 H 1.08996 * 109.47188 * 184.99508 * 7 6 5 38 38 H 1.09003 * 109.47250 * 304.99837 * 7 6 5 39 39 H 0.96993 * 120.00264 * 0.02562 * 8 7 6 40 40 H 0.96996 * 119.99941 * 180.02562 * 12 11 9 41 41 H 1.07998 * 120.00183 * 0.02562 * 20 19 17 42 42 H 1.07992 * 120.00494 * 179.97438 * 21 20 19 43 43 H 0.96993 * 119.99592 * 0.02562 * 24 23 22 44 44 H 0.96993 * 119.99958 * 179.72434 * 24 23 22 45 45 H 1.08000 * 120.00263 * 179.72331 * 26 22 21 46 46 H 1.07997 * 119.99968 * 180.25426 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 8 1.2060 1.9935 -2.0814 6 6 1.3323 2.4164 -3.4406 7 6 -0.0567 2.6895 -4.0209 8 7 -0.6658 3.8213 -3.3178 9 6 -1.9184 4.2506 -3.6673 10 1 -2.4570 3.7550 -4.4614 11 6 -2.4953 5.3233 -3.0015 12 7 -3.6994 5.7356 -3.3370 13 14 -1.5633 6.1809 -1.6284 14 1 -0.7540 7.2889 -2.1963 15 1 -2.5288 6.7283 -0.6417 16 1 -0.6665 5.2071 -0.9556 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1686 0.0799 19 6 1.4019 -2.4474 -0.0956 20 6 1.9820 -3.5396 -0.7422 21 6 1.2957 -4.7314 -0.8321 22 6 0.0204 -4.8458 -0.2770 23 6 -0.7170 -6.1257 -0.3741 24 7 -1.9489 -6.2360 0.1616 25 8 -0.2117 -7.0770 -0.9368 26 6 -0.5621 -3.7518 0.3645 27 6 0.1264 -2.5617 0.4590 28 1 -0.3634 0.0826 1.0243 29 1 -0.3633 0.8457 -0.5839 30 1 -0.3633 -0.9285 -0.4406 31 1 1.6083 2.0284 0.5139 32 1 3.1498 1.1384 0.5139 33 1 3.0731 2.6064 -1.4437 34 1 2.9642 0.9131 -1.9815 35 1 1.9299 3.3269 -3.4837 36 1 1.8206 1.6335 -4.0208 37 1 0.0326 2.9259 -5.0812 38 1 -0.6825 1.8056 -3.8972 39 1 -0.1820 4.2666 -2.6049 40 1 -4.1024 6.4854 -2.8720 41 1 2.9688 -3.4510 -1.1721 42 1 1.7444 -5.5765 -1.3329 43 1 -2.3523 -5.4767 0.6103 44 1 -2.4337 -7.0734 0.0944 45 1 -1.5508 -3.8390 0.7902 46 1 -0.3227 -1.7163 0.9590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701042013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:53 Heat of formation + Delta-G solvation = -53.567271 kcal Electronic energy + Delta-G solvation = -28364.450538 eV Core-core repulsion = 24255.673953 eV Total energy + Delta-G solvation = -4108.776585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99266 -39.98951 -38.31808 -37.76676 -35.91087 -34.62265 -34.33548 -32.33478 -31.50631 -31.38918 -29.89671 -28.10338 -27.02622 -25.23924 -23.33033 -23.30618 -22.77696 -21.24838 -21.14458 -19.99888 -18.57695 -17.71601 -17.64323 -17.25570 -16.80459 -16.37137 -15.97323 -15.71149 -15.42929 -15.17450 -14.94192 -14.75481 -14.41440 -14.29094 -14.08448 -13.81136 -13.52574 -13.13053 -12.99535 -12.88047 -12.80098 -12.63085 -12.27409 -12.05087 -11.93253 -11.62470 -11.33072 -11.16444 -10.87777 -10.59203 -10.55752 -10.19803 -10.14395 -10.12701 -9.60494 -9.49785 -9.43811 -9.34343 -8.92692 -8.85442 -7.22398 -5.76952 -3.11687 0.08346 0.87263 2.10067 2.61604 2.81717 2.99438 3.37242 3.41483 3.43588 3.44660 3.82222 4.06522 4.26018 4.35449 4.46885 4.59605 4.79165 4.91492 4.96644 4.97554 5.10640 5.18647 5.24071 5.28936 5.34137 5.44414 5.47336 5.52839 5.54343 5.66965 5.68027 5.74675 5.79856 5.86372 5.87443 5.98183 6.22456 6.27965 6.33828 6.48647 6.62041 6.82021 7.09585 7.39790 7.75659 7.85439 7.99321 8.42095 9.22098 9.94412 10.15391 11.41545 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.002551 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.539271 B =10973.180393 C =12035.330900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.595 5.595 3 C 0.118 3.882 4 C 0.043 3.957 5 O -0.374 6.374 6 C 0.055 3.945 7 C 0.160 3.840 8 N -0.751 5.751 9 C -0.242 4.242 10 H 0.089 0.911 11 C 0.003 3.997 12 N -0.936 5.936 13 Si 0.884 3.116 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.274 1.274 17 C 0.554 3.446 18 O -0.538 6.538 19 C -0.100 4.100 20 C -0.071 4.071 21 C -0.066 4.066 22 C -0.120 4.120 23 C 0.563 3.437 24 N -0.849 5.849 25 O -0.537 6.537 26 C -0.094 4.094 27 C -0.107 4.107 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.034 0.966 39 H 0.364 0.636 40 H 0.259 0.741 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.402 0.598 44 H 0.406 0.594 45 H 0.134 0.866 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.675 -20.276 10.689 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.327 5.327 3 C -0.004 4.004 4 C -0.035 4.035 5 O -0.294 6.294 6 C -0.022 4.022 7 C 0.032 3.968 8 N -0.397 5.397 9 C -0.372 4.372 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.584 5.584 13 Si 0.714 3.286 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.200 1.200 17 C 0.342 3.658 18 O -0.416 6.416 19 C -0.103 4.103 20 C -0.089 4.089 21 C -0.085 4.085 22 C -0.124 4.124 23 C 0.349 3.651 24 N -0.414 5.414 25 O -0.414 6.414 26 C -0.113 4.113 27 C -0.125 4.125 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.197 0.803 40 H 0.069 0.931 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.232 0.768 44 H 0.238 0.762 45 H 0.151 0.849 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.383 -20.763 10.315 25.011 hybrid contribution 0.209 0.893 0.998 1.355 sum 9.592 -19.870 11.313 24.795 Atomic orbital electron populations 1.22595 0.78681 1.05591 1.01808 1.47631 1.07713 1.05404 1.71938 1.21605 0.98480 0.84527 0.95822 1.22887 0.87539 0.99274 0.93780 1.87977 1.27987 1.87586 1.25809 1.22848 0.99336 0.97694 0.82339 1.20666 0.89991 0.91411 0.94695 1.42632 1.18370 1.36421 1.42302 1.19070 0.91152 1.11374 1.15611 0.89302 1.24663 0.96394 0.98714 0.99473 1.69708 1.15006 1.29360 1.44332 0.86537 0.79298 0.79804 0.82921 1.21241 1.21825 1.20001 1.18406 0.87028 0.83632 0.76688 1.90775 1.13431 1.87264 1.50106 1.20120 0.95083 0.94457 1.00659 1.21226 1.00042 0.90996 0.96683 1.21250 0.92844 0.97832 0.96567 1.20062 0.96216 0.93824 1.02256 1.18326 0.81390 0.87669 0.77714 1.43755 1.18365 1.18659 1.60577 1.90828 1.68031 1.39660 1.42923 1.21245 0.99899 0.92055 0.98106 1.21925 0.93328 0.98404 0.98862 0.92157 0.88709 0.89492 0.89082 0.88277 0.92446 0.93286 0.93423 0.93473 0.94164 0.94853 0.80347 0.93110 0.84160 0.83887 0.76780 0.76235 0.84868 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.53 8.65 59.85 0.52 1.05 16 2 N -0.60 -6.70 2.84 -182.62 -0.52 -7.22 16 3 C 0.12 1.32 5.87 -4.04 -0.02 1.30 16 4 C 0.04 0.54 6.28 37.16 0.23 0.77 16 5 O -0.37 -5.78 9.04 -35.23 -0.32 -6.10 16 6 C 0.05 0.84 6.07 37.16 0.23 1.06 16 7 C 0.16 3.05 6.65 -4.04 -0.03 3.02 16 8 N -0.75 -17.81 5.35 -59.91 -0.32 -18.13 16 9 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 10 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 12 N -0.94 -29.24 13.97 55.49 0.78 -28.46 16 13 Si 0.88 21.91 27.74 -169.99 -4.71 17.20 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.27 -6.39 6.52 56.52 0.37 -6.02 16 17 C 0.55 6.78 7.44 -12.24 -0.09 6.69 16 18 O -0.54 -8.08 16.30 5.34 0.09 -7.99 16 19 C -0.10 -1.02 5.48 -104.90 -0.57 -1.59 16 20 C -0.07 -0.69 9.58 -39.24 -0.38 -1.07 16 21 C -0.07 -0.61 9.58 -39.24 -0.38 -0.99 16 22 C -0.12 -1.02 5.88 -104.90 -0.62 -1.63 16 23 C 0.56 5.06 8.05 -12.24 -0.10 4.96 16 24 N -0.85 -4.10 8.82 30.57 0.27 -3.83 16 25 O -0.54 -6.94 17.17 5.34 0.09 -6.85 16 26 C -0.09 -0.61 9.53 -39.24 -0.37 -0.99 16 27 C -0.11 -0.82 7.42 -39.25 -0.29 -1.11 16 28 H 0.06 0.45 7.44 -51.93 -0.39 0.06 16 29 H 0.09 1.16 7.04 -51.93 -0.37 0.80 16 30 H 0.09 0.74 4.72 -51.93 -0.24 0.50 16 31 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.10 1.06 7.36 -51.93 -0.38 0.68 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.36 8.51 5.53 -40.82 -0.23 8.28 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.14 1.32 7.95 -52.49 -0.42 0.91 16 42 H 0.14 1.27 7.64 -52.49 -0.40 0.87 16 43 H 0.40 0.83 6.85 -40.82 -0.28 0.55 16 44 H 0.41 1.50 8.93 -40.82 -0.36 1.14 16 45 H 0.13 0.40 6.39 -52.49 -0.34 0.07 16 46 H 0.15 0.92 4.80 -52.49 -0.25 0.67 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -37.36 382.35 -7.21 -44.57 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.20 Total: 6.56 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.12 Total: 4.49 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.21 Total: -57.63 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.14 Total: -20.94 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.36 -7.21 -44.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701042013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.997 kcal (2) G-P(sol) polarization free energy of solvation -37.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds