Wall clock time and date at job start Tue Mar 31 2020 18:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99724 * 2 1 4 4 C 1.53003 * 109.46993 * 269.99985 * 3 2 1 5 5 O 1.42893 * 109.47220 * 65.00377 * 4 3 2 6 6 C 1.42904 * 113.99976 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47228 * 179.97438 * 6 5 4 8 8 N 1.46507 * 109.47099 * 64.99592 * 7 6 5 9 9 C 1.36938 * 119.99856 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99742 * 180.02562 * 9 8 7 12 12 N 1.31626 * 119.99836 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00159 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.47096 * 90.00158 * 13 11 9 15 15 H 1.48504 * 109.46867 * 209.99851 * 13 11 9 16 16 H 1.48499 * 109.46974 * 329.99800 * 13 11 9 17 17 C 1.34773 * 120.00031 * 179.97438 * 2 1 3 18 18 O 1.21530 * 119.99868 * 184.32368 * 17 2 1 19 19 C 1.48035 * 120.00044 * 4.32343 * 17 2 1 20 20 C 1.39556 * 119.99654 * 147.91491 * 19 17 2 21 21 C 1.37823 * 120.00087 * 180.02562 * 20 19 17 22 22 C 1.39557 * 119.99460 * 0.02562 * 21 20 19 23 23 C 1.48035 * 119.99836 * 179.97438 * 22 21 20 24 24 N 1.34780 * 120.00194 * 180.02562 * 23 22 21 25 25 O 1.21531 * 120.00167 * 0.02562 * 23 22 21 26 26 C 1.39557 * 120.00353 * 0.25525 * 22 21 20 27 27 C 1.37814 * 119.99687 * 359.48913 * 26 22 21 28 28 H 1.08996 * 109.47668 * 274.61239 * 1 2 3 29 29 H 1.08998 * 109.47235 * 34.62265 * 1 2 3 30 30 H 1.09006 * 109.46886 * 154.61486 * 1 2 3 31 31 H 1.09002 * 109.47155 * 30.00189 * 3 2 1 32 32 H 1.09001 * 109.46978 * 149.99891 * 3 2 1 33 33 H 1.09004 * 109.46500 * 184.99950 * 4 3 2 34 34 H 1.08995 * 109.46926 * 304.99492 * 4 3 2 35 35 H 1.09001 * 109.47017 * 299.99540 * 6 5 4 36 36 H 1.08997 * 109.47324 * 59.99882 * 6 5 4 37 37 H 1.08996 * 109.47188 * 184.99508 * 7 6 5 38 38 H 1.09003 * 109.47250 * 304.99837 * 7 6 5 39 39 H 0.96993 * 120.00264 * 0.02562 * 8 7 6 40 40 H 0.96996 * 119.99941 * 180.02562 * 12 11 9 41 41 H 1.07998 * 120.00183 * 0.02562 * 20 19 17 42 42 H 1.07992 * 120.00494 * 179.97438 * 21 20 19 43 43 H 0.96993 * 119.99592 * 0.02562 * 24 23 22 44 44 H 0.96993 * 119.99958 * 179.72434 * 24 23 22 45 45 H 1.08000 * 120.00263 * 179.72331 * 26 22 21 46 46 H 1.07997 * 119.99968 * 180.25426 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 8 1.2060 1.9935 -2.0814 6 6 1.3323 2.4164 -3.4406 7 6 -0.0567 2.6895 -4.0209 8 7 -0.6658 3.8213 -3.3178 9 6 -1.9184 4.2506 -3.6673 10 1 -2.4570 3.7550 -4.4614 11 6 -2.4953 5.3233 -3.0015 12 7 -3.6994 5.7356 -3.3370 13 14 -1.5633 6.1809 -1.6284 14 1 -0.7540 7.2889 -2.1963 15 1 -2.5288 6.7283 -0.6417 16 1 -0.6665 5.2071 -0.9556 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1686 0.0799 19 6 1.4019 -2.4474 -0.0956 20 6 1.9820 -3.5396 -0.7422 21 6 1.2957 -4.7314 -0.8321 22 6 0.0204 -4.8458 -0.2770 23 6 -0.7170 -6.1257 -0.3741 24 7 -1.9489 -6.2360 0.1616 25 8 -0.2117 -7.0770 -0.9368 26 6 -0.5621 -3.7518 0.3645 27 6 0.1264 -2.5617 0.4590 28 1 -0.3634 0.0826 1.0243 29 1 -0.3633 0.8457 -0.5839 30 1 -0.3633 -0.9285 -0.4406 31 1 1.6083 2.0284 0.5139 32 1 3.1498 1.1384 0.5139 33 1 3.0731 2.6064 -1.4437 34 1 2.9642 0.9131 -1.9815 35 1 1.9299 3.3269 -3.4837 36 1 1.8206 1.6335 -4.0208 37 1 0.0326 2.9259 -5.0812 38 1 -0.6825 1.8056 -3.8972 39 1 -0.1820 4.2666 -2.6049 40 1 -4.1024 6.4854 -2.8720 41 1 2.9688 -3.4510 -1.1721 42 1 1.7444 -5.5765 -1.3329 43 1 -2.3523 -5.4767 0.6103 44 1 -2.4337 -7.0734 0.0944 45 1 -1.5508 -3.8390 0.7902 46 1 -0.3227 -1.7163 0.9590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701042013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:52 Heat of formation + Delta-G solvation = -82.770132 kcal Electronic energy + Delta-G solvation = -28365.716869 eV Core-core repulsion = 24255.673953 eV Total energy + Delta-G solvation = -4110.042916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76093 -40.76222 -39.25541 -38.73675 -36.99252 -36.28651 -34.96298 -33.70549 -32.91826 -32.03131 -30.98655 -29.54987 -27.86187 -26.02637 -25.18156 -24.08872 -23.50951 -22.81725 -21.90777 -20.79560 -19.73310 -19.17823 -18.53045 -17.95385 -17.71378 -17.40204 -17.03307 -16.74030 -16.33868 -16.11262 -15.93255 -15.84801 -15.57694 -15.32376 -15.04058 -14.88077 -14.63254 -14.51107 -14.29022 -13.88570 -13.72975 -13.67332 -13.51057 -13.22969 -12.94500 -12.80505 -12.73119 -12.46396 -12.13964 -12.00791 -11.88616 -11.71452 -11.37989 -11.03934 -10.99102 -10.77657 -10.54232 -10.17170 -10.02536 -9.73426 -9.26996 -7.99756 -5.32741 -0.61991 0.24209 1.32807 1.41402 1.44060 1.52828 1.79524 2.02568 2.43994 2.51976 2.71081 2.76950 3.31755 3.32723 3.67208 3.68092 3.79150 3.87652 4.02613 4.10729 4.17573 4.24689 4.26951 4.33788 4.40256 4.44132 4.52058 4.57099 4.60403 4.62158 4.80409 4.87423 4.97065 5.02793 5.07847 5.11830 5.16437 5.17878 5.41068 5.64241 5.77507 5.82971 6.19039 6.24057 6.32754 6.35875 6.96274 7.11070 7.22295 7.86913 8.07712 9.21809 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.002551 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.539271 B =10973.180393 C =12035.330900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.595 5.595 3 C 0.116 3.884 4 C 0.044 3.956 5 O -0.392 6.392 6 C 0.063 3.937 7 C 0.155 3.845 8 N -0.752 5.752 9 C -0.233 4.233 10 H 0.056 0.944 11 C -0.065 4.065 12 N -0.985 5.985 13 Si 0.957 3.043 14 H -0.281 1.281 15 H -0.296 1.296 16 H -0.248 1.248 17 C 0.552 3.448 18 O -0.575 6.575 19 C -0.116 4.116 20 C -0.081 4.081 21 C -0.076 4.076 22 C -0.126 4.126 23 C 0.561 3.439 24 N -0.826 5.826 25 O -0.586 6.586 26 C -0.079 4.079 27 C -0.102 4.102 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.027 0.973 39 H 0.368 0.632 40 H 0.258 0.742 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.419 0.581 44 H 0.415 0.585 45 H 0.176 0.824 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.755 -20.333 12.698 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.325 5.325 3 C -0.006 4.006 4 C -0.034 4.034 5 O -0.311 6.311 6 C -0.013 4.013 7 C 0.029 3.971 8 N -0.399 5.399 9 C -0.364 4.364 10 H 0.074 0.926 11 C -0.256 4.256 12 N -0.636 5.636 13 Si 0.784 3.216 14 H -0.208 1.208 15 H -0.222 1.222 16 H -0.172 1.172 17 C 0.341 3.659 18 O -0.456 6.456 19 C -0.119 4.119 20 C -0.100 4.100 21 C -0.095 4.095 22 C -0.129 4.129 23 C 0.346 3.654 24 N -0.390 5.390 25 O -0.467 6.467 26 C -0.097 4.097 27 C -0.120 4.120 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.201 0.799 40 H 0.066 0.934 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.252 0.748 44 H 0.247 0.753 45 H 0.193 0.807 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.447 -20.832 12.340 25.990 hybrid contribution 0.116 0.827 0.308 0.890 sum 9.563 -20.005 12.648 25.527 Atomic orbital electron populations 1.22714 0.77636 1.05087 1.03256 1.47728 1.08401 1.05178 1.71192 1.21653 0.98988 0.84767 0.95205 1.22993 0.86561 0.99802 0.94006 1.87946 1.29725 1.87735 1.25733 1.22689 0.96730 0.99055 0.82839 1.20825 0.91948 0.89485 0.94882 1.42618 1.16942 1.37575 1.42722 1.19047 0.92516 1.10683 1.14183 0.92644 1.25510 0.97449 0.99938 1.02708 1.69893 1.17176 1.30309 1.46233 0.85375 0.78045 0.78818 0.79368 1.20772 1.22240 1.17237 1.18714 0.86712 0.84436 0.76007 1.90747 1.15007 1.87815 1.51988 1.20108 0.96272 0.93516 1.02042 1.21187 1.00047 0.91376 0.97393 1.21256 0.93628 0.97488 0.97155 1.20176 0.95927 0.94422 1.02422 1.18448 0.82264 0.87175 0.77467 1.43589 1.16860 1.19711 1.58884 1.90810 1.69385 1.41119 1.45367 1.21636 1.01165 0.90518 0.96376 1.22167 0.92211 0.99519 0.98108 0.89308 0.91139 0.88376 0.88172 0.87921 0.90898 0.93856 0.92499 0.91013 0.93681 0.95510 0.79882 0.93362 0.84901 0.84455 0.74836 0.75295 0.80685 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 8.65 127.77 1.11 2.02 16 2 N -0.59 -12.32 2.84 -849.99 -2.41 -14.73 16 3 C 0.12 2.38 5.87 86.38 0.51 2.89 16 4 C 0.04 1.00 6.28 71.98 0.45 1.45 16 5 O -0.39 -11.19 9.04 -148.98 -1.35 -12.54 16 6 C 0.06 1.79 6.07 71.98 0.44 2.23 16 7 C 0.15 5.70 6.65 86.38 0.57 6.27 16 8 N -0.75 -34.65 5.35 -343.44 -1.84 -36.48 16 9 C -0.23 -13.20 10.47 84.03 0.88 -12.32 16 10 H 0.06 3.44 8.06 -2.91 -0.02 3.41 16 11 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 12 N -0.99 -62.57 13.97 21.65 0.30 -62.27 16 13 Si 0.96 44.63 27.74 68.60 1.90 46.53 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 15 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 16 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 17 C 0.55 13.03 7.44 86.84 0.65 13.68 16 18 O -0.57 -17.29 16.30 -3.81 -0.06 -17.35 16 19 C -0.12 -2.24 5.48 -20.04 -0.11 -2.35 16 20 C -0.08 -1.61 9.58 22.49 0.22 -1.39 16 21 C -0.08 -1.42 9.58 22.49 0.22 -1.21 16 22 C -0.13 -1.94 5.88 -20.04 -0.12 -2.06 16 23 C 0.56 9.32 8.05 86.84 0.70 10.01 16 24 N -0.83 -5.75 8.82 -175.47 -1.55 -7.30 16 25 O -0.59 -15.16 17.17 -3.81 -0.07 -15.23 16 26 C -0.08 -0.76 9.53 22.49 0.21 -0.55 16 27 C -0.10 -1.28 7.42 22.49 0.17 -1.11 16 28 H 0.09 0.98 7.44 -2.39 -0.02 0.97 16 29 H 0.07 1.59 7.04 -2.39 -0.02 1.57 16 30 H 0.10 1.40 4.72 -2.38 -0.01 1.39 16 31 H 0.10 1.87 8.07 -2.39 -0.02 1.85 16 32 H 0.10 2.04 7.36 -2.39 -0.02 2.03 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.37 16.26 5.53 -92.71 -0.51 15.75 16 40 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 41 H 0.13 2.70 7.95 -2.91 -0.02 2.68 16 42 H 0.14 2.62 7.64 -2.91 -0.02 2.60 16 43 H 0.42 0.07 6.85 -92.71 -0.64 -0.56 16 44 H 0.41 2.08 8.93 -92.71 -0.83 1.25 16 45 H 0.18 0.14 6.39 -2.91 -0.02 0.12 16 46 H 0.17 1.40 4.80 -2.91 -0.01 1.38 16 Total: -1.00 -83.09 382.35 0.30 -82.79 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -0.98 Total: 22.34 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 6.35 Total: 14.25 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.50 Total: -120.78 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -1.48 Total: -45.12 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Total: -83.09 0.30 -82.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701042013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.018 kcal (2) G-P(sol) polarization free energy of solvation -83.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds