Wall clock time and date at job start Tue Mar 31 2020 19:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35523 * 117.00128 * 2 1 4 4 C 1.38820 * 120.89256 * 0.24918 * 3 2 1 5 5 C 1.38715 * 119.20105 * 180.23983 * 4 3 2 6 6 O 1.35520 * 119.47540 * 179.76973 * 5 4 3 7 7 N 1.32594 * 121.05005 * 359.50267 * 5 4 3 8 8 C 1.31617 * 121.97463 * 0.25234 * 7 5 4 9 9 C 1.39536 * 120.67311 * 359.97438 * 8 7 5 10 10 C 1.47338 * 120.55847 * 179.97438 * 9 8 7 11 11 O 1.21615 * 120.00655 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99797 * 359.97438 * 10 9 8 13 13 C 1.46500 * 120.00135 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47423 * 175.12596 * 13 12 10 15 15 N 1.46493 * 110.01745 * 303.91044 * 14 13 12 16 16 C 1.36936 * 120.00022 * 301.45365 * 15 14 13 17 17 H 1.08007 * 120.00157 * 354.61336 * 16 15 14 18 18 C 1.38811 * 120.00369 * 174.60699 * 16 15 14 19 19 N 1.31621 * 119.99689 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00264 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47228 * 90.00213 * 20 18 16 22 22 H 1.48499 * 109.46949 * 210.00182 * 20 18 16 23 23 H 1.48493 * 109.47165 * 329.99826 * 20 18 16 24 24 C 1.54263 * 110.03187 * 182.46135 * 14 13 12 25 25 C 1.54891 * 104.19563 * 217.10713 * 24 14 13 26 26 C 1.54887 * 102.74909 * 37.94664 * 25 24 14 27 27 C 1.53878 * 110.02566 * 65.29964 * 14 13 12 28 28 H 1.08999 * 109.47265 * 299.99985 * 1 2 3 29 29 H 1.08999 * 109.46800 * 60.00483 * 1 2 3 30 30 H 1.08997 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.08006 * 120.40233 * 0.02562 * 4 3 2 32 32 H 0.96692 * 114.00464 * 269.73106 * 6 5 4 33 33 H 1.08001 * 119.66107 * 180.02562 * 8 7 5 34 34 H 0.97003 * 120.00464 * 0.02562 * 12 10 9 35 35 H 1.08994 * 109.47585 * 295.13350 * 13 12 10 36 36 H 1.09011 * 109.46888 * 55.13176 * 13 12 10 37 37 H 0.96995 * 120.00267 * 121.45830 * 15 14 13 38 38 H 0.97002 * 120.00201 * 179.97438 * 19 18 16 39 39 H 1.09002 * 110.49120 * 335.79080 * 24 14 13 40 40 H 1.09008 * 110.48411 * 98.43301 * 24 14 13 41 41 H 1.08996 * 110.75787 * 279.63088 * 25 24 14 42 42 H 1.08996 * 110.75547 * 156.26182 * 25 24 14 43 43 H 1.08997 * 110.48778 * 203.38124 * 26 25 24 44 44 H 1.09001 * 110.48285 * 80.73190 * 26 25 24 45 45 H 1.08998 * 110.02844 * 238.56880 * 27 14 13 46 46 H 1.09003 * 110.03583 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.3065 2.3834 0.0052 5 6 1.9725 3.6002 -0.0001 6 8 1.2577 4.7516 0.0002 7 7 3.2973 3.6548 -0.0001 8 6 4.0396 2.5679 0.0000 9 6 3.4501 1.3032 0.0005 10 6 4.2835 0.0882 0.0000 11 8 3.7591 -1.0090 0.0009 12 7 5.6272 0.1928 -0.0016 13 6 6.4560 -1.0153 -0.0015 14 6 7.9296 -0.6229 -0.1260 15 7 8.1320 0.1912 -1.3270 16 6 7.8012 -0.3100 -2.5576 17 1 7.4732 -1.3346 -2.6531 18 6 7.8871 0.4989 -3.6825 19 7 8.2871 1.7474 -3.5662 20 14 7.4350 -0.1846 -5.3611 21 1 5.9894 0.0413 -5.6146 22 1 8.2343 0.5028 -6.4070 23 1 7.7222 -1.6411 -5.3963 24 6 8.8098 -1.8882 -0.1893 25 6 10.0795 -1.5081 0.6121 26 6 9.5086 -0.6575 1.7738 27 6 8.3738 0.1596 1.1223 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2270 2.3513 0.0097 32 1 1.0503 5.0860 -0.8830 33 1 5.1161 2.6559 0.0004 34 1 6.0457 1.0679 -0.0020 35 1 6.3027 -1.5611 0.9294 36 1 6.1761 -1.6479 -0.8440 37 1 8.5005 1.0852 -1.2505 38 1 8.3475 2.3126 -4.3522 39 1 8.3010 -2.7308 0.2790 40 1 9.0667 -2.1228 -1.2224 41 1 10.7607 -0.9175 -0.0005 42 1 10.5765 -2.3997 0.9942 43 1 10.2754 0.0060 2.1735 44 1 9.1127 -1.3013 2.5592 45 1 8.7409 1.1447 0.8343 46 1 7.5395 0.2602 1.8165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714504477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:00 Heat of formation + Delta-G solvation = -63.840319 kcal Electronic energy + Delta-G solvation = -29802.229187 eV Core-core repulsion = 25693.007129 eV Total energy + Delta-G solvation = -4109.222058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.05411 -39.21787 -38.81774 -37.98829 -36.81875 -34.06061 -33.30229 -31.70491 -31.08668 -30.32614 -28.26290 -28.01164 -27.43075 -24.90230 -23.88338 -23.22079 -22.79944 -20.69106 -19.88788 -19.43437 -18.72213 -17.70139 -17.48589 -16.96727 -16.84892 -16.10338 -15.62296 -15.40546 -14.97418 -14.88440 -14.66128 -14.49581 -14.47660 -14.05715 -13.48362 -13.31381 -13.14053 -12.80176 -12.63059 -12.58718 -12.10690 -11.87194 -11.73300 -11.65441 -11.43992 -11.09857 -10.77958 -10.71852 -10.63108 -10.50418 -10.22748 -10.12906 -9.94445 -9.84998 -9.63701 -9.32081 -9.24915 -8.95270 -8.90014 -8.35766 -7.00387 -5.79991 -3.08725 0.53456 1.13075 2.91146 3.00151 3.42414 3.43181 3.48885 3.49539 3.63921 3.90486 4.39345 4.56752 4.60824 4.77578 4.87761 4.91683 5.10826 5.12616 5.21469 5.24061 5.27692 5.32718 5.42906 5.56346 5.66415 5.70416 5.81023 5.95556 5.96044 6.10474 6.16010 6.19733 6.27691 6.32442 6.45462 6.57342 6.61920 6.78664 6.83511 6.98534 7.01370 7.11451 7.25064 7.72206 7.75560 8.06575 8.38654 8.72523 9.50718 10.04232 10.39648 11.41966 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.003990 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.703122 B = 7014.996556 C = 7978.477011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.269 6.269 3 C 0.234 3.766 4 C -0.292 4.292 5 C 0.363 3.637 6 O -0.482 6.482 7 N -0.526 5.526 8 C 0.202 3.798 9 C -0.224 4.224 10 C 0.562 3.438 11 O -0.534 6.534 12 N -0.696 5.696 13 C 0.122 3.878 14 C 0.188 3.812 15 N -0.711 5.711 16 C -0.232 4.232 17 H 0.069 0.931 18 C -0.008 4.008 19 N -0.930 5.930 20 Si 0.899 3.101 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.282 1.282 24 C -0.131 4.131 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.127 4.127 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.149 0.851 32 H 0.405 0.595 33 H 0.175 0.825 34 H 0.399 0.601 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 0.734 10.206 14.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.177 6.177 3 C 0.178 3.822 4 C -0.314 4.314 5 C 0.186 3.814 6 O -0.290 6.290 7 N -0.249 5.249 8 C 0.044 3.956 9 C -0.230 4.230 10 C 0.347 3.653 11 O -0.412 6.412 12 N -0.346 5.346 13 C -0.004 4.004 14 C 0.096 3.904 15 N -0.352 5.352 16 C -0.363 4.363 17 H 0.087 0.913 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.731 3.269 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.165 4.165 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.166 0.834 32 H 0.264 0.736 33 H 0.192 0.808 34 H 0.235 0.765 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.848 0.406 10.638 15.199 hybrid contribution -0.738 -0.054 -1.661 1.818 sum -11.586 0.351 8.977 14.661 Atomic orbital electron populations 1.23249 0.78301 1.04715 1.01440 1.86411 1.21102 1.24614 1.85565 1.19134 0.90905 0.84763 0.87428 1.22036 1.01993 0.91695 1.15714 1.18990 0.86695 0.84890 0.90860 1.84676 1.71289 1.38807 1.34221 1.67223 1.06291 1.33343 1.17994 1.22770 1.00047 0.84826 0.87989 1.20645 0.91429 0.96427 1.14510 1.17541 0.82347 0.87793 0.77582 1.90786 1.72973 1.27235 1.50241 1.45612 1.04831 1.10806 1.73338 1.21898 0.91725 0.86375 1.00399 1.20472 0.90703 0.91617 0.87607 1.42546 1.75699 1.16421 1.00545 1.19079 1.36979 0.95785 0.84420 0.91263 1.24662 1.02233 0.95798 0.97685 1.69641 1.53409 1.06026 1.28780 0.86306 0.77843 0.78056 0.84705 1.21908 1.21904 1.20779 1.22821 0.95753 0.97458 1.01129 1.22384 0.97845 0.98688 0.96539 1.22298 0.97577 0.98294 0.97638 1.22449 0.97945 0.99482 0.96645 0.92320 0.92302 0.87553 0.83353 0.73598 0.80848 0.76507 0.92989 0.91323 0.78101 0.93595 0.92907 0.90276 0.91400 0.92765 0.92364 0.92295 0.91219 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.84 101.05 0.99 1.16 16 2 O -0.27 -4.00 8.71 -39.56 -0.34 -4.34 16 3 C 0.23 3.47 6.74 -38.36 -0.26 3.21 16 4 C -0.29 -3.53 9.02 -39.19 -0.35 -3.89 16 5 C 0.36 4.74 7.73 -17.05 -0.13 4.60 16 6 O -0.48 -5.08 13.54 -18.25 -0.25 -5.32 16 7 N -0.53 -7.91 10.37 -13.04 -0.14 -8.04 16 8 C 0.20 3.04 10.71 -17.16 -0.18 2.85 16 9 C -0.22 -3.65 5.90 -104.71 -0.62 -4.27 16 10 C 0.56 10.54 7.76 -12.56 -0.10 10.44 16 11 O -0.53 -11.55 15.28 -16.03 -0.24 -11.79 16 12 N -0.70 -12.30 5.05 -61.41 -0.31 -12.61 16 13 C 0.12 2.22 3.99 -4.04 -0.02 2.21 16 14 C 0.19 3.33 0.68 -130.70 -0.09 3.24 16 15 N -0.71 -15.59 4.76 -46.20 -0.22 -15.81 16 16 C -0.23 -5.90 8.39 -15.06 -0.13 -6.02 16 17 H 0.07 1.79 7.23 -52.48 -0.38 1.41 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -26.39 13.06 55.49 0.72 -25.66 16 20 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.13 -2.22 5.94 -25.07 -0.15 -2.37 16 25 C -0.12 -1.72 6.91 -24.74 -0.17 -1.89 16 26 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 27 C -0.13 -1.89 5.80 -25.61 -0.15 -2.04 16 28 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 29 H 0.06 0.44 7.72 -51.93 -0.40 0.04 16 30 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.15 1.33 6.45 -52.48 -0.34 0.99 16 32 H 0.41 2.23 9.06 45.56 0.41 2.64 16 33 H 0.17 2.37 6.41 -52.49 -0.34 2.03 16 34 H 0.40 6.62 6.04 -40.82 -0.25 6.38 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.45 7.49 -51.92 -0.39 1.06 16 37 H 0.38 9.03 7.28 -40.82 -0.30 8.73 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.05 0.81 7.85 -51.93 -0.41 0.41 16 40 H 0.08 1.54 7.12 -51.92 -0.37 1.17 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.07 7.44 -51.93 -0.39 0.68 16 46 H 0.06 0.85 7.54 -51.93 -0.39 0.46 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -33.34 375.87 -7.35 -40.69 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -5.60 Total: 14.97 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.62 Total: 5.16 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.06 Total: -62.13 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.84 Total: -21.46 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.34 -7.35 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714504477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.151 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds