Wall clock time and date at job start Tue Mar 31 2020 18:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46902 * 110.99981 * 2 1 4 4 C 1.53000 * 109.47134 * 66.04461 * 3 2 1 5 5 N 1.46495 * 109.47308 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00462 * 270.00545 * 5 4 3 7 7 C 1.34777 * 119.99663 * 89.99797 * 5 4 3 8 8 O 1.21783 * 120.00075 * 0.02562 * 7 5 4 9 9 C 1.41555 * 120.00143 * 180.27844 * 7 5 4 10 10 C 1.35622 * 120.00180 * 179.72945 * 9 7 5 11 11 C 1.41613 * 120.00108 * 180.02562 * 10 9 7 12 12 C 1.37947 * 126.10194 * 179.71439 * 11 10 9 13 13 C 1.40317 * 106.52781 * 179.85199 * 12 11 10 14 14 C 1.35163 * 107.20075 * 0.40859 * 13 12 11 15 15 O 1.34019 * 109.03387 * 359.74144 * 14 13 12 16 16 C 1.46894 * 111.00026 * 236.04348 * 2 1 3 17 17 C 1.50703 * 109.47457 * 293.95443 * 16 2 1 18 18 O 1.21289 * 119.99755 * 0.02562 * 17 16 2 19 19 N 1.34779 * 119.99933 * 180.02562 * 17 16 2 20 20 C 1.37092 * 119.99558 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00369 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99994 * 179.97438 * 20 19 17 23 23 N 1.31418 * 120.00435 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99808 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47511 * 89.99595 * 24 22 20 26 26 H 1.48504 * 109.47005 * 209.99760 * 24 22 20 27 27 H 1.48502 * 109.47124 * 329.99156 * 24 22 20 28 28 H 1.08997 * 109.46977 * 60.00071 * 1 2 3 29 29 H 1.09002 * 109.46953 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46927 * 300.00064 * 1 2 3 31 31 H 1.08994 * 109.46975 * 306.04608 * 3 2 1 32 32 H 1.09005 * 109.47092 * 186.04367 * 3 2 1 33 33 H 1.09006 * 109.47224 * 59.99786 * 4 3 2 34 34 H 1.08995 * 109.47168 * 300.00484 * 4 3 2 35 35 H 1.09001 * 109.47017 * 269.99768 * 6 5 4 36 36 H 1.08997 * 109.47346 * 29.99456 * 6 5 4 37 37 H 1.09004 * 109.47612 * 149.99554 * 6 5 4 38 38 H 1.08001 * 119.99553 * 359.72277 * 9 7 5 39 39 H 1.08001 * 120.00267 * 359.97438 * 10 9 7 40 40 H 1.08000 * 126.73821 * 359.96434 * 12 11 10 41 41 H 1.08001 * 126.39960 * 180.15395 * 13 12 11 42 42 H 1.08003 * 125.48102 * 179.72403 * 14 13 12 43 43 H 1.08997 * 109.47165 * 53.95511 * 16 2 1 44 44 H 1.09001 * 109.46962 * 173.95296 * 16 2 1 45 45 H 0.96998 * 120.00328 * 359.97438 * 19 17 16 46 46 H 0.96997 * 120.00228 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1569 3.4249 1.3185 6 6 3.5019 3.6928 1.8338 7 6 1.4031 4.4366 0.8445 8 8 0.2849 4.2140 0.4165 9 6 1.9130 5.7571 0.8393 10 6 1.1565 6.7743 0.3573 11 6 1.6668 8.0952 0.3516 12 6 1.0121 9.2176 -0.1116 13 6 1.8869 10.2977 0.0802 14 6 3.0178 9.8032 0.6311 15 8 2.8826 8.4797 0.7929 16 6 1.9954 -0.7660 -1.1375 17 6 1.6370 -2.2205 -0.9728 18 8 1.0047 -2.5831 -0.0034 19 7 2.0190 -3.1182 -1.9027 20 6 1.6924 -4.4412 -1.7530 21 1 1.1286 -4.7640 -0.8903 22 6 2.0857 -5.3666 -2.7119 23 7 1.7731 -6.6350 -2.5683 24 14 3.0601 -4.8082 -4.2046 25 1 4.5123 -4.8763 -3.9017 26 1 2.7526 -5.6939 -5.3562 27 1 2.6900 -3.4103 -4.5427 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0798 1.3444 -0.1082 33 1 2.0657 1.5015 2.1492 34 1 0.5472 2.0844 1.4265 35 1 3.4458 3.9088 2.9008 36 1 4.1334 2.8191 1.6728 37 1 3.9272 4.5498 1.3115 38 1 2.9045 5.9545 1.2193 39 1 0.1651 6.5768 -0.0230 40 1 0.0200 9.2574 -0.5366 41 1 1.6943 11.3306 -0.1698 42 1 3.8901 10.3816 0.8976 43 1 1.5611 -0.3873 -2.0627 44 1 3.0797 -0.6611 -1.1755 45 1 2.5243 -2.8281 -2.6781 46 1 2.0480 -7.2811 -3.2375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715750873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:03 Heat of formation + Delta-G solvation = -8.223555 kcal Electronic energy + Delta-G solvation = -27473.870455 eV Core-core repulsion = 23367.060121 eV Total energy + Delta-G solvation = -4106.810334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.04683 -40.34158 -38.73423 -36.90337 -35.50409 -34.60888 -33.86371 -33.54876 -31.64807 -30.58826 -29.09689 -27.79618 -26.99852 -25.69461 -24.50770 -23.22870 -22.35772 -21.29163 -20.54294 -19.32672 -18.95818 -18.28501 -18.16357 -17.24387 -16.61129 -16.55332 -16.13661 -15.50270 -15.32772 -15.16883 -14.90024 -14.62186 -14.19919 -13.85809 -13.52430 -13.45000 -13.38321 -13.29751 -13.07033 -13.04727 -12.81199 -12.77886 -12.40210 -12.23878 -12.04201 -11.85871 -11.41673 -11.26383 -11.10826 -10.98747 -10.77303 -10.57300 -10.41696 -10.15320 -9.94940 -9.50794 -8.99147 -8.52543 -8.41430 -8.14784 -7.92096 -6.28240 -3.79375 -0.00946 1.63785 2.22162 2.43455 2.76582 3.04915 3.08840 3.14640 3.16922 3.77786 4.05921 4.12941 4.18091 4.39705 4.43235 4.58251 4.73983 4.83196 4.85770 4.98548 5.06805 5.14109 5.22787 5.25597 5.27123 5.38695 5.47951 5.51492 5.56167 5.58493 5.67240 5.72489 5.84303 5.89288 5.92278 5.95099 5.99547 6.04228 6.31023 6.53654 6.59488 7.12698 7.20646 7.34589 7.61884 7.93773 8.17972 8.63729 8.98548 9.45807 9.87366 10.84951 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.001709 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.878153 B =16380.015318 C =16768.100588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.042 3.958 4 C 0.118 3.882 5 N -0.611 5.611 6 C 0.075 3.925 7 C 0.546 3.454 8 O -0.542 6.542 9 C -0.208 4.208 10 C 0.010 3.990 11 C -0.010 4.010 12 C -0.162 4.162 13 C -0.219 4.219 14 C -0.020 4.020 15 O -0.166 6.166 16 C 0.044 3.956 17 C 0.454 3.546 18 O -0.558 6.558 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.017 0.983 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.207 0.793 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 34.848 5.195 35.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.241 5.241 3 C -0.087 4.087 4 C -0.005 4.005 5 N -0.344 5.344 6 C -0.068 4.068 7 C 0.338 3.662 8 O -0.422 6.422 9 C -0.229 4.229 10 C -0.010 4.010 11 C -0.059 4.059 12 C -0.181 4.181 13 C -0.238 4.238 14 C -0.089 4.089 15 O -0.062 6.062 16 C -0.087 4.087 17 C 0.240 3.760 18 O -0.440 6.440 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.035 0.965 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.151 0.849 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.224 0.776 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.202 0.798 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.054 33.780 6.124 34.700 hybrid contribution 0.718 0.923 -2.121 2.422 sum 5.771 34.703 4.003 35.406 Atomic orbital electron populations 1.22598 0.86365 1.04379 0.99460 1.61521 1.09072 1.10967 1.42501 1.22433 1.00057 0.89095 0.97152 1.21482 1.01051 0.79854 0.98087 1.47756 1.16555 1.07900 1.62189 1.21901 0.82999 1.02705 0.99226 1.17024 0.85271 0.85553 0.78311 1.90858 1.19472 1.85188 1.46712 1.22222 1.02006 0.93154 1.05477 1.20710 0.99498 0.87095 0.93721 1.19898 0.84967 0.95218 1.05864 1.22416 1.01474 0.91270 1.02989 1.21824 0.94726 1.00872 1.06336 1.24357 1.01099 0.80737 1.02689 1.84099 1.32922 1.24522 1.64613 1.21887 1.00664 0.93968 0.92224 1.19633 0.85010 0.86405 0.84960 1.90524 1.42507 1.79944 1.30985 1.42212 1.51135 1.08369 1.21476 1.19431 1.33716 0.80324 1.09754 0.86250 1.25027 0.97919 0.95135 0.98073 1.69623 1.45777 1.01127 1.35721 0.86679 0.80896 0.78708 0.83150 1.19631 1.20218 1.19553 0.96479 0.88553 0.91824 0.94688 0.90997 0.89306 0.89354 0.92238 0.90425 0.90883 0.84857 0.82193 0.82506 0.82839 0.77624 0.93364 0.89369 0.79751 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.96 60.07 0.54 0.88 16 2 N -0.52 -8.69 4.50 -244.37 -1.10 -9.79 16 3 C 0.04 0.56 5.28 -3.82 -0.02 0.54 16 4 C 0.12 1.43 5.33 -4.04 -0.02 1.41 16 5 N -0.61 -6.35 2.87 -185.03 -0.53 -6.88 16 6 C 0.07 0.49 10.13 59.84 0.61 1.10 16 7 C 0.55 6.44 7.44 -15.00 -0.11 6.33 16 8 O -0.54 -8.32 15.69 5.11 0.08 -8.24 16 9 C -0.21 -1.88 8.68 -39.25 -0.34 -2.22 16 10 C 0.01 0.08 9.39 -39.23 -0.37 -0.29 16 11 C -0.01 -0.08 6.84 -38.40 -0.26 -0.34 16 12 C -0.16 -1.08 10.90 -38.91 -0.42 -1.50 16 13 C -0.22 -1.17 10.87 -39.89 -0.43 -1.61 16 14 C -0.02 -0.10 12.06 29.64 0.36 0.26 16 15 O -0.17 -1.26 10.18 4.71 0.05 -1.21 16 16 C 0.04 0.78 5.45 -4.98 -0.03 0.75 16 17 C 0.45 10.52 7.48 -10.98 -0.08 10.44 16 18 O -0.56 -15.04 13.91 5.55 0.08 -14.96 16 19 N -0.59 -14.34 5.09 -10.97 -0.06 -14.40 16 20 C -0.30 -8.67 10.16 -14.94 -0.15 -8.82 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 24 Si 0.88 19.59 27.74 -169.99 -4.71 14.88 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 30 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 31 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.09 1.22 5.83 -51.93 -0.30 0.92 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 37 H 0.07 0.38 6.08 -51.93 -0.32 0.06 16 38 H 0.13 0.95 5.74 -52.49 -0.30 0.65 16 39 H 0.16 1.35 7.46 -52.49 -0.39 0.95 16 40 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.21 0.23 8.06 -52.48 -0.42 -0.19 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 45 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -36.10 386.69 -6.79 -42.89 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.36 Total: 9.11 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.84 Total: 7.97 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.91 Total: -56.27 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.21 Total: -24.41 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.10 -6.79 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715750873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.665 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds