Wall clock time and date at job start Tue Mar 31 2020 18:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00185 * 2 1 4 4 C 1.53001 * 109.47347 * 66.04229 * 3 2 1 5 5 N 1.46498 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00175 * 269.72735 * 5 4 3 7 7 C 1.34775 * 119.99794 * 90.00277 * 5 4 3 8 8 O 1.21782 * 120.00136 * 0.02562 * 7 5 4 9 9 C 1.41548 * 120.00063 * 179.97438 * 7 5 4 10 10 C 1.35630 * 120.00199 * 173.54356 * 9 7 5 11 11 C 1.41611 * 119.99879 * 350.03911 * 10 9 7 12 12 C 1.37950 * 126.10713 * 139.64846 * 11 10 9 13 13 C 1.40305 * 106.53322 * 179.97438 * 12 11 10 14 14 C 1.35161 * 107.20259 * 0.02562 * 13 12 11 15 15 O 1.34017 * 109.03811 * 359.76488 * 14 13 12 16 16 C 1.46903 * 110.99635 * 236.04261 * 2 1 3 17 17 C 1.50698 * 109.47034 * 293.95423 * 16 2 1 18 18 O 1.21287 * 120.00230 * 0.02562 * 17 16 2 19 19 N 1.34778 * 119.99836 * 180.02562 * 17 16 2 20 20 C 1.37100 * 120.00122 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99526 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99843 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99861 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46647 * 90.00357 * 24 22 20 26 26 H 1.48495 * 109.47043 * 210.00297 * 24 22 20 27 27 H 1.48495 * 109.46926 * 330.00688 * 24 22 20 28 28 H 1.08996 * 109.46986 * 60.00249 * 1 2 3 29 29 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46708 * 300.00239 * 1 2 3 31 31 H 1.09002 * 109.46752 * 306.04676 * 3 2 1 32 32 H 1.08993 * 109.47172 * 186.04740 * 3 2 1 33 33 H 1.09002 * 109.46830 * 60.00494 * 4 3 2 34 34 H 1.08993 * 109.47402 * 300.00370 * 4 3 2 35 35 H 1.09000 * 109.47357 * 90.00417 * 6 5 4 36 36 H 1.09001 * 109.47116 * 209.99736 * 6 5 4 37 37 H 1.08997 * 109.47135 * 329.99902 * 6 5 4 38 38 H 1.07995 * 120.00302 * 353.55102 * 9 7 5 39 39 H 1.08002 * 120.00520 * 170.04084 * 10 9 7 40 40 H 1.08004 * 126.73098 * 359.97438 * 12 11 10 41 41 H 1.07999 * 126.40207 * 179.97438 * 13 12 11 42 42 H 1.07999 * 125.48137 * 180.02562 * 14 13 12 43 43 H 1.08994 * 109.47159 * 53.95509 * 16 2 1 44 44 H 1.09007 * 109.46485 * 173.95514 * 16 2 1 45 45 H 0.97000 * 119.99923 * 0.02562 * 19 17 16 46 46 H 0.97008 * 119.99940 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1571 3.4249 1.3184 6 6 3.4997 3.6936 1.8393 7 6 1.4033 4.4366 0.8444 8 8 0.2851 4.2141 0.4164 9 6 1.9109 5.7580 0.8450 10 6 1.2088 6.7545 0.2504 11 6 0.0814 6.4466 -0.5493 12 6 -1.1083 7.1443 -0.5803 13 6 -1.9317 6.4884 -1.5079 14 6 -1.2300 5.4409 -1.9949 15 8 -0.0192 5.4211 -1.4207 16 6 1.9954 -0.7661 -1.1376 17 6 1.6368 -2.2205 -0.9727 18 8 1.0046 -2.5831 -0.0033 19 7 2.0187 -3.1183 -1.9026 20 6 1.6921 -4.4413 -1.7530 21 1 1.1291 -4.7642 -0.8897 22 6 2.0854 -5.3667 -2.7119 23 7 2.7708 -4.9739 -3.7620 24 14 1.6409 -7.1696 -2.5076 25 1 0.3287 -7.4318 -3.1514 26 1 2.6832 -8.0119 -3.1473 27 1 1.5575 -7.4981 -1.0618 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3443 -0.1083 33 1 2.0659 1.5016 2.1491 34 1 0.5473 2.0845 1.4265 35 1 4.2266 3.6090 1.0315 36 1 3.5336 4.7009 2.2544 37 1 3.7380 2.9708 2.6196 38 1 2.8573 5.9727 1.3189 39 1 1.5095 7.7828 0.3868 40 1 -1.3570 8.0230 -0.0037 41 1 -2.9385 6.7678 -1.7811 42 1 -1.5860 4.7360 -2.7316 43 1 1.5611 -0.3874 -2.0628 44 1 3.0798 -0.6612 -1.1756 45 1 2.5247 -2.8283 -2.6777 46 1 3.0457 -5.6201 -4.4313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715750876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:06 Heat of formation + Delta-G solvation = -4.664156 kcal Electronic energy + Delta-G solvation = -28530.605991 eV Core-core repulsion = 24423.950004 eV Total energy + Delta-G solvation = -4106.655987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52610 -40.20705 -38.55845 -36.78781 -35.42329 -34.35492 -33.80367 -32.96271 -31.22206 -30.35392 -28.75946 -27.62729 -26.89873 -25.57288 -24.49470 -23.12661 -21.78171 -21.30018 -20.52058 -19.14248 -18.92459 -18.04710 -17.79733 -17.01478 -16.28559 -16.00405 -15.98255 -15.36226 -15.18012 -14.82862 -14.57226 -14.41253 -14.10116 -13.83712 -13.48501 -13.45804 -13.26436 -13.12929 -12.97059 -12.82522 -12.69059 -12.61792 -12.21155 -12.03774 -11.89280 -11.47715 -11.25726 -11.16358 -10.89064 -10.70708 -10.36787 -10.34212 -10.19033 -10.04948 -9.88899 -9.44493 -8.86744 -8.37268 -8.13559 -7.94109 -7.79963 -6.38607 -3.79222 0.31564 1.95853 2.53065 2.87169 3.03175 3.19887 3.26935 3.28202 3.34410 3.94804 4.11652 4.33354 4.43394 4.49718 4.77212 4.87706 4.93152 4.99569 5.03196 5.12746 5.16684 5.27207 5.31043 5.42529 5.44547 5.54453 5.58886 5.74162 5.75782 5.77678 5.83359 5.90868 5.98602 6.03488 6.05909 6.12510 6.32180 6.36894 6.42118 6.65097 7.07087 7.22665 7.33297 7.45139 7.58227 8.07292 8.09993 8.65674 9.21515 9.58265 10.10456 10.79279 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002153 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.905802 B =13003.985809 C =13840.234058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.516 5.516 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.613 5.613 6 C 0.076 3.924 7 C 0.537 3.463 8 O -0.522 6.522 9 C -0.210 4.210 10 C 0.007 3.993 11 C 0.004 3.996 12 C -0.180 4.180 13 C -0.227 4.227 14 C -0.012 4.012 15 O -0.135 6.135 16 C 0.047 3.953 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.015 0.985 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.198 0.802 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 27.087 6.362 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.241 5.241 3 C -0.086 4.086 4 C -0.002 4.002 5 N -0.347 5.347 6 C -0.067 4.067 7 C 0.329 3.671 8 O -0.400 6.400 9 C -0.230 4.230 10 C -0.013 4.013 11 C -0.046 4.046 12 C -0.200 4.200 13 C -0.246 4.246 14 C -0.082 4.082 15 O -0.028 6.028 16 C -0.084 4.084 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.033 0.967 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.172 0.828 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.215 0.785 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.154 26.133 7.029 27.063 hybrid contribution -0.115 -0.263 -1.192 1.226 sum -0.269 25.871 5.837 26.522 Atomic orbital electron populations 1.22558 0.86617 1.04162 0.99183 1.61534 1.08864 1.10929 1.42726 1.22408 0.99980 0.89107 0.97089 1.21454 1.00814 0.79919 0.98037 1.47766 1.16501 1.07829 1.62560 1.21881 0.83176 1.02219 0.99410 1.17151 0.85724 0.85669 0.78599 1.90885 1.19325 1.84364 1.45416 1.22407 1.01864 0.93607 1.05131 1.20656 0.89948 0.99497 0.91226 1.19561 0.97418 0.89512 0.98130 1.22127 0.93633 1.02281 1.01923 1.21627 1.01841 0.98933 1.02228 1.24190 0.83450 1.00253 1.00337 1.84256 1.32970 1.41860 1.43704 1.21850 1.00535 0.94105 0.91923 1.19731 0.85342 0.86614 0.85202 1.90479 1.43808 1.80148 1.31631 1.41871 1.49499 1.07365 1.21518 1.19696 1.32791 0.82295 1.07886 0.87922 1.25258 0.96882 1.00551 0.95346 1.69617 1.38138 1.35731 1.10969 0.85860 0.77988 0.81791 0.78664 1.20457 1.20960 1.19415 0.96693 0.88669 0.92108 0.94765 0.91120 0.89609 0.89630 0.92417 0.90955 0.90638 0.84219 0.82808 0.83495 0.83598 0.78496 0.93545 0.89530 0.77517 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.96 60.07 0.54 0.95 16 2 N -0.52 -9.19 4.50 -244.37 -1.10 -10.29 16 3 C 0.04 0.63 5.28 -3.83 -0.02 0.61 16 4 C 0.12 1.55 5.38 -4.04 -0.02 1.53 16 5 N -0.61 -6.64 2.87 -185.04 -0.53 -7.18 16 6 C 0.08 0.51 10.22 59.85 0.61 1.12 16 7 C 0.54 6.59 7.23 -15.00 -0.11 6.48 16 8 O -0.52 -8.30 12.11 -19.52 -0.24 -8.54 16 9 C -0.21 -1.79 9.15 -39.25 -0.36 -2.15 16 10 C 0.01 0.05 9.95 -39.23 -0.39 -0.34 16 11 C 0.00 0.05 5.26 -38.40 -0.20 -0.16 16 12 C -0.18 -1.84 10.90 -38.91 -0.42 -2.26 16 13 C -0.23 -2.34 10.87 -39.90 -0.43 -2.77 16 14 C -0.01 -0.13 12.06 29.64 0.36 0.22 16 15 O -0.13 -1.82 7.96 -19.97 -0.16 -1.98 16 16 C 0.05 0.90 5.45 -4.97 -0.03 0.87 16 17 C 0.45 10.80 7.48 -10.99 -0.08 10.72 16 18 O -0.58 -15.80 13.91 5.55 0.08 -15.72 16 19 N -0.57 -14.63 5.29 -10.96 -0.06 -14.69 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 2.00 5.82 -51.93 -0.30 1.70 16 30 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 31 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 33 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16 34 H 0.09 1.26 5.83 -51.93 -0.30 0.96 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.32 6.00 -51.93 -0.31 0.01 16 37 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 38 H 0.14 0.69 6.03 -52.49 -0.32 0.37 16 39 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.20 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 44 H 0.09 1.47 7.93 -51.92 -0.41 1.06 16 45 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -35.74 383.83 -7.75 -43.49 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.43 Total: 10.25 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.80 Total: 6.76 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.97 Total: -56.32 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.32 Total: -26.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.74 -7.75 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715750876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.822 kcal (2) G-P(sol) polarization free energy of solvation -35.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds