Wall clock time and date at job start Tue Mar 31 2020 18:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00185 * 2 1 4 4 C 1.53001 * 109.47347 * 66.04229 * 3 2 1 5 5 N 1.46498 * 109.47036 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00175 * 269.72735 * 5 4 3 7 7 C 1.34775 * 119.99794 * 90.00277 * 5 4 3 8 8 O 1.21782 * 120.00136 * 0.02562 * 7 5 4 9 9 C 1.41548 * 120.00063 * 179.97438 * 7 5 4 10 10 C 1.35630 * 120.00199 * 173.54356 * 9 7 5 11 11 C 1.41611 * 119.99879 * 350.03911 * 10 9 7 12 12 C 1.37950 * 126.10713 * 139.64846 * 11 10 9 13 13 C 1.40305 * 106.53322 * 179.97438 * 12 11 10 14 14 C 1.35161 * 107.20259 * 0.02562 * 13 12 11 15 15 O 1.34017 * 109.03811 * 359.76488 * 14 13 12 16 16 C 1.46903 * 110.99635 * 236.04261 * 2 1 3 17 17 C 1.50698 * 109.47034 * 293.95423 * 16 2 1 18 18 O 1.21287 * 120.00230 * 0.02562 * 17 16 2 19 19 N 1.34778 * 119.99836 * 180.02562 * 17 16 2 20 20 C 1.37100 * 120.00122 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99526 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99843 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99861 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46647 * 90.00357 * 24 22 20 26 26 H 1.48495 * 109.47043 * 210.00297 * 24 22 20 27 27 H 1.48495 * 109.46926 * 330.00688 * 24 22 20 28 28 H 1.08996 * 109.46986 * 60.00249 * 1 2 3 29 29 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46708 * 300.00239 * 1 2 3 31 31 H 1.09002 * 109.46752 * 306.04676 * 3 2 1 32 32 H 1.08993 * 109.47172 * 186.04740 * 3 2 1 33 33 H 1.09002 * 109.46830 * 60.00494 * 4 3 2 34 34 H 1.08993 * 109.47402 * 300.00370 * 4 3 2 35 35 H 1.09000 * 109.47357 * 90.00417 * 6 5 4 36 36 H 1.09001 * 109.47116 * 209.99736 * 6 5 4 37 37 H 1.08997 * 109.47135 * 329.99902 * 6 5 4 38 38 H 1.07995 * 120.00302 * 353.55102 * 9 7 5 39 39 H 1.08002 * 120.00520 * 170.04084 * 10 9 7 40 40 H 1.08004 * 126.73098 * 359.97438 * 12 11 10 41 41 H 1.07999 * 126.40207 * 179.97438 * 13 12 11 42 42 H 1.07999 * 125.48137 * 180.02562 * 14 13 12 43 43 H 1.08994 * 109.47159 * 53.95509 * 16 2 1 44 44 H 1.09007 * 109.46485 * 173.95514 * 16 2 1 45 45 H 0.97000 * 119.99923 * 0.02562 * 19 17 16 46 46 H 0.97008 * 119.99940 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1571 3.4249 1.3184 6 6 3.4997 3.6936 1.8393 7 6 1.4033 4.4366 0.8444 8 8 0.2851 4.2141 0.4164 9 6 1.9109 5.7580 0.8450 10 6 1.2088 6.7545 0.2504 11 6 0.0814 6.4466 -0.5493 12 6 -1.1083 7.1443 -0.5803 13 6 -1.9317 6.4884 -1.5079 14 6 -1.2300 5.4409 -1.9949 15 8 -0.0192 5.4211 -1.4207 16 6 1.9954 -0.7661 -1.1376 17 6 1.6368 -2.2205 -0.9727 18 8 1.0046 -2.5831 -0.0033 19 7 2.0187 -3.1183 -1.9026 20 6 1.6921 -4.4413 -1.7530 21 1 1.1291 -4.7642 -0.8897 22 6 2.0854 -5.3667 -2.7119 23 7 2.7708 -4.9739 -3.7620 24 14 1.6409 -7.1696 -2.5076 25 1 0.3287 -7.4318 -3.1514 26 1 2.6832 -8.0119 -3.1473 27 1 1.5575 -7.4981 -1.0618 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9273 -0.8309 32 1 3.0797 1.3443 -0.1083 33 1 2.0659 1.5016 2.1491 34 1 0.5473 2.0845 1.4265 35 1 4.2266 3.6090 1.0315 36 1 3.5336 4.7009 2.2544 37 1 3.7380 2.9708 2.6196 38 1 2.8573 5.9727 1.3189 39 1 1.5095 7.7828 0.3868 40 1 -1.3570 8.0230 -0.0037 41 1 -2.9385 6.7678 -1.7811 42 1 -1.5860 4.7360 -2.7316 43 1 1.5611 -0.3874 -2.0628 44 1 3.0798 -0.6612 -1.1756 45 1 2.5247 -2.8283 -2.6777 46 1 3.0457 -5.6201 -4.4313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715750876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:06 Heat of formation + Delta-G solvation = -29.444065 kcal Electronic energy + Delta-G solvation = -28531.680528 eV Core-core repulsion = 24423.950004 eV Total energy + Delta-G solvation = -4107.730525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.31395 -41.09846 -40.35737 -38.19793 -36.49963 -35.82803 -35.07001 -33.75054 -33.29534 -31.45927 -29.67882 -29.10032 -27.67578 -27.02716 -25.99657 -24.19106 -22.57903 -22.44670 -21.42622 -21.01256 -19.88460 -19.71683 -18.80872 -17.91995 -17.80884 -17.10200 -16.86324 -16.67044 -16.49482 -16.21809 -16.12831 -15.66506 -15.49439 -15.04871 -14.89255 -14.69459 -14.06925 -14.05388 -13.94279 -13.78321 -13.70672 -13.48655 -13.45503 -13.37045 -13.11071 -13.01829 -12.74263 -12.62269 -12.56569 -12.41170 -12.12094 -11.86767 -11.47050 -11.03316 -10.91988 -10.68398 -10.34899 -10.01229 -9.67676 -9.32155 -8.88847 -8.46862 -5.95619 -0.36325 1.17647 1.37533 1.41141 1.54224 1.75889 2.02155 2.03563 2.27234 2.30451 2.53322 2.84959 3.19427 3.38976 3.74336 3.86862 3.96713 4.10274 4.14652 4.18109 4.22092 4.31205 4.35347 4.43564 4.47787 4.51341 4.55117 4.59268 4.72689 4.74337 4.85353 4.87393 4.89943 4.98639 5.09757 5.12800 5.14204 5.35180 5.40671 5.52244 5.68380 5.81535 6.00947 6.11058 6.29126 6.44777 6.59885 7.12276 7.22998 7.55100 8.10895 8.70689 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002153 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.905802 B =13003.985809 C =13840.234058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.527 5.527 3 C 0.054 3.946 4 C 0.127 3.873 5 N -0.612 5.612 6 C 0.069 3.931 7 C 0.524 3.476 8 O -0.569 6.569 9 C -0.215 4.215 10 C 0.009 3.991 11 C -0.017 4.017 12 C -0.190 4.190 13 C -0.232 4.232 14 C -0.041 4.041 15 O -0.163 6.163 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.612 6.612 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.020 0.980 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.181 0.819 39 H 0.200 0.800 40 H 0.173 0.827 41 H 0.166 0.834 42 H 0.211 0.789 43 H 0.060 0.940 44 H 0.113 0.887 45 H 0.396 0.604 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 28.831 6.922 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.252 5.252 3 C -0.074 4.074 4 C 0.004 3.996 5 N -0.345 5.345 6 C -0.073 4.073 7 C 0.317 3.683 8 O -0.451 6.451 9 C -0.235 4.235 10 C -0.010 4.010 11 C -0.066 4.066 12 C -0.209 4.209 13 C -0.251 4.251 14 C -0.110 4.110 15 O -0.058 6.058 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.498 6.498 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.198 0.802 39 H 0.217 0.783 40 H 0.190 0.810 41 H 0.183 0.817 42 H 0.228 0.772 43 H 0.077 0.923 44 H 0.131 0.869 45 H 0.229 0.771 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.474 27.908 7.589 28.959 hybrid contribution -0.624 -0.749 -1.345 1.661 sum 0.850 27.159 6.244 27.881 Atomic orbital electron populations 1.22372 0.87195 1.02023 0.99953 1.61516 1.08515 1.12881 1.42248 1.22392 1.00644 0.86867 0.97530 1.21230 0.99611 0.81446 0.97353 1.47870 1.17891 1.06519 1.62185 1.22181 0.80889 1.04231 0.99982 1.17876 0.85331 0.87239 0.77853 1.90870 1.21469 1.85219 1.47547 1.22599 1.03413 0.91417 1.06036 1.21266 0.88379 1.01621 0.89740 1.20324 0.99019 0.89016 0.98277 1.22532 0.93292 1.03055 1.02035 1.21987 1.02666 0.98505 1.01949 1.24650 0.83534 1.01437 1.01392 1.84224 1.33852 1.43048 1.44634 1.21742 1.02173 0.90447 0.92932 1.20647 0.83810 0.88514 0.83991 1.90458 1.45046 1.81348 1.32962 1.41931 1.50006 1.07098 1.22117 1.19662 1.34358 0.83934 1.08123 0.90248 1.26057 0.96255 1.04413 0.94665 1.69679 1.38091 1.37231 1.11253 0.84916 0.78212 0.76702 0.78435 1.19720 1.19457 1.19707 0.96486 0.92009 0.90873 0.96217 0.89251 0.88605 0.92089 0.91487 0.88085 0.89834 0.80192 0.78343 0.80965 0.81689 0.77200 0.92256 0.86877 0.77068 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.21 8.96 127.69 1.14 2.36 16 2 N -0.53 -18.66 4.50 -927.04 -4.17 -22.83 16 3 C 0.05 1.53 5.28 86.30 0.46 1.99 16 4 C 0.13 3.20 5.38 86.38 0.46 3.66 16 5 N -0.61 -12.26 2.87 -857.51 -2.46 -14.72 16 6 C 0.07 0.70 10.22 127.77 1.31 2.00 16 7 C 0.52 12.29 7.23 85.06 0.62 12.91 16 8 O -0.57 -18.47 12.11 18.95 0.23 -18.24 16 9 C -0.21 -3.08 9.15 22.48 0.21 -2.88 16 10 C 0.01 0.13 9.95 22.50 0.22 0.35 16 11 C -0.02 -0.36 5.26 23.03 0.12 -0.24 16 12 C -0.19 -3.70 10.90 22.70 0.25 -3.45 16 13 C -0.23 -4.75 10.87 22.06 0.24 -4.51 16 14 C -0.04 -0.95 12.06 67.11 0.81 -0.14 16 15 O -0.16 -4.52 7.96 17.36 0.14 -4.38 16 16 C 0.06 2.18 5.45 85.56 0.47 2.64 16 17 C 0.44 21.88 7.48 87.66 0.66 22.53 16 18 O -0.61 -34.64 13.91 -3.05 -0.04 -34.68 16 19 N -0.57 -30.28 5.29 -306.99 -1.62 -31.90 16 20 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 21 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 24 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 28 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 2.72 5.82 -2.39 -0.01 2.70 16 30 H 0.07 2.48 6.47 -2.38 -0.02 2.47 16 31 H 0.02 0.62 8.12 -2.39 -0.02 0.60 16 32 H 0.09 2.18 7.93 -2.39 -0.02 2.16 16 33 H 0.10 2.19 7.89 -2.39 -0.02 2.17 16 34 H 0.06 1.84 5.83 -2.39 -0.01 1.83 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 0.45 6.00 -2.39 -0.01 0.43 16 37 H 0.08 0.74 7.89 -2.39 -0.02 0.72 16 38 H 0.18 0.94 6.03 -2.91 -0.02 0.92 16 39 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 42 H 0.21 3.83 8.06 -2.91 -0.02 3.81 16 43 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 44 H 0.11 3.64 7.93 -2.38 -0.02 3.62 16 45 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 46 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -80.75 383.83 2.89 -77.86 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.28 Total: 34.93 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 8.23 Total: 18.57 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -7.98 Total: -119.66 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: 0.33 Total: -57.30 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -80.75 2.89 -77.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715750876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.417 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds