Wall clock time and date at job start Tue Mar 31 2020 18:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35433 * 119.47418 * 2 1 4 4 C 1.35758 * 121.23243 * 179.97438 * 3 2 1 5 5 C 1.39477 * 120.12713 * 359.79314 * 4 3 2 6 6 C 1.39331 * 118.95864 * 0.47773 * 5 4 3 7 7 C 1.47082 * 120.58879 * 179.77925 * 6 5 4 8 8 O 1.21652 * 119.99746 * 4.86091 * 7 6 5 9 9 N 1.34770 * 120.00579 * 184.86478 * 7 6 5 10 10 C 1.46499 * 120.00217 * 175.55722 * 9 7 6 11 11 C 1.52996 * 109.50454 * 66.32553 * 10 9 7 12 12 O 1.42900 * 109.47093 * 296.25561 * 11 10 9 13 13 C 1.53040 * 109.49737 * 186.39125 * 10 9 7 14 14 C 1.53047 * 109.53867 * 58.58408 * 13 10 9 15 15 C 1.53191 * 109.31245 * 61.36322 * 14 13 10 16 16 N 1.46928 * 108.77843 * 305.36549 * 15 14 13 17 17 C 1.36935 * 120.63310 * 233.33803 * 16 15 14 18 18 H 1.07997 * 120.00389 * 153.20479 * 17 16 15 19 19 C 1.38807 * 119.99692 * 333.19659 * 17 16 15 20 20 N 1.31620 * 120.00449 * 339.50276 * 19 17 16 21 21 Si 1.86798 * 119.99846 * 159.49965 * 19 17 16 22 22 H 1.48498 * 109.47150 * 60.00196 * 21 19 17 23 23 H 1.48500 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47500 * 300.00143 * 21 19 17 25 25 C 1.46923 * 118.73382 * 53.60877 * 16 15 14 26 26 C 1.34656 * 119.46643 * 180.02562 * 2 1 3 27 27 O 1.21881 * 120.10272 * 359.97185 * 26 2 1 28 28 H 1.08999 * 109.47390 * 269.97748 * 1 2 3 29 29 H 1.09012 * 109.47089 * 29.97295 * 1 2 3 30 30 H 1.08996 * 109.47466 * 149.97574 * 1 2 3 31 31 H 1.08007 * 119.38514 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.93415 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.51733 * 180.26104 * 5 4 3 34 34 H 0.97002 * 119.99557 * 355.54375 * 9 7 6 35 35 H 1.09000 * 109.46866 * 56.24637 * 11 10 9 36 36 H 1.08993 * 109.47670 * 176.25022 * 11 10 9 37 37 H 0.96700 * 114.00205 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.46175 * 298.56183 * 13 10 9 39 39 H 1.09003 * 109.45272 * 178.59208 * 13 10 9 40 40 H 1.09006 * 109.49535 * 301.41412 * 14 13 10 41 41 H 1.09000 * 109.49670 * 181.31667 * 14 13 10 42 42 H 1.09006 * 109.58244 * 185.57882 * 15 14 13 43 43 H 1.09003 * 109.70528 * 65.22381 * 15 14 13 44 44 H 0.96999 * 120.00737 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.59092 * 66.18364 * 25 16 15 46 46 H 1.09008 * 109.58379 * 186.60537 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1314 1.1790 0.0000 4 6 3.4883 1.2207 0.0005 5 6 4.2250 0.0364 0.0054 6 6 3.5463 -1.1804 -0.0004 7 6 4.2874 -2.4508 -0.0004 8 8 5.5002 -2.4475 0.0940 9 7 3.6229 -3.6187 -0.1051 10 6 4.3655 -4.8777 -0.2031 11 6 5.1102 -5.1350 1.1084 12 8 6.0831 -4.1085 1.3130 13 6 3.3902 -6.0264 -0.4704 14 6 2.6206 -5.7537 -1.7649 15 6 3.6074 -5.6752 -2.9340 16 7 4.6342 -4.6723 -2.6198 17 6 4.9023 -3.6513 -3.4920 18 1 5.2981 -2.7164 -3.1237 19 6 4.6655 -3.8180 -4.8495 20 7 4.5780 -5.0286 -5.3586 21 14 4.4709 -2.3242 -5.9540 22 1 5.7095 -1.5066 -5.9037 23 1 4.2271 -2.7689 -7.3497 24 1 3.3208 -1.5094 -5.4866 25 6 5.3720 -4.7893 -1.3546 26 6 2.1274 -1.1724 -0.0005 27 8 1.5101 -2.2233 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.5728 2.1035 0.0004 32 1 3.9983 2.1727 0.0001 33 1 5.3047 0.0622 0.0101 34 1 2.6530 -3.6256 -0.1153 35 1 4.4005 -5.1329 1.9356 36 1 5.6084 -6.1032 1.0595 37 1 6.5941 -4.2076 2.1279 38 1 2.6881 -6.1073 0.3593 39 1 3.9459 -6.9591 -0.5681 40 1 2.0846 -4.8086 -1.6772 41 1 1.9097 -6.5607 -1.9424 42 1 3.0772 -5.3836 -3.8407 43 1 4.0789 -6.6466 -3.0829 44 1 4.4121 -5.1452 -6.3071 45 1 5.9872 -5.6890 -1.3722 46 1 6.0062 -3.9132 -1.2191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717027779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:06 Heat of formation + Delta-G solvation = -37.355130 kcal Electronic energy + Delta-G solvation = -31624.222328 eV Core-core repulsion = 27516.148754 eV Total energy + Delta-G solvation = -4108.073574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.43303 -39.45059 -37.09855 -37.04532 -35.67285 -34.33291 -33.63430 -31.77799 -30.33420 -30.19913 -29.24495 -27.81744 -25.18571 -24.92236 -24.69591 -22.67595 -21.93843 -21.10967 -20.23044 -18.46829 -17.78481 -17.34793 -16.83436 -16.48355 -16.42905 -16.18349 -15.42246 -14.97372 -14.75218 -14.54132 -14.37052 -13.84141 -13.73574 -13.46794 -13.31609 -12.89990 -12.78006 -12.60480 -12.48962 -12.37368 -12.23840 -11.96560 -11.89994 -11.65199 -11.18728 -11.01171 -10.87803 -10.60863 -10.25630 -10.07001 -9.98807 -9.90644 -9.83327 -9.49381 -9.43794 -9.27856 -8.68107 -8.30088 -8.02306 -7.86678 -6.45602 -5.61345 -2.97335 0.53722 1.81652 2.45242 3.23073 3.47854 3.52012 3.54506 3.98917 4.29034 4.36750 4.45386 4.65140 4.79809 4.93029 4.96205 5.01012 5.18223 5.32914 5.39972 5.48900 5.54673 5.65816 5.68728 5.80123 5.85466 5.86075 5.95319 5.95773 6.14819 6.27983 6.38674 6.42981 6.54024 6.71609 6.79331 6.83207 6.88024 7.03422 7.36739 7.52323 7.61415 7.78242 7.92052 8.00464 8.26233 8.62959 8.66168 9.31017 9.41136 10.06239 10.63199 11.47760 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.006088 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.957957 B = 4598.180848 C = 5936.432476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.496 5.496 3 C 0.141 3.859 4 C -0.233 4.233 5 C 0.042 3.958 6 C -0.248 4.248 7 C 0.571 3.429 8 O -0.504 6.504 9 N -0.692 5.692 10 C 0.161 3.839 11 C 0.070 3.930 12 O -0.519 6.519 13 C -0.109 4.109 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.583 5.583 17 C -0.231 4.231 18 H 0.062 0.938 19 C -0.003 4.003 20 N -0.905 5.905 21 Si 0.894 3.106 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.288 1.288 25 C 0.138 3.862 26 C 0.527 3.473 27 O -0.540 6.540 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.164 0.836 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.407 0.593 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.347 0.653 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.016 0.984 44 H 0.251 0.749 45 H 0.015 0.985 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 10.629 15.344 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.205 5.205 3 C 0.012 3.988 4 C -0.256 4.256 5 C 0.019 3.981 6 C -0.256 4.256 7 C 0.356 3.644 8 O -0.380 6.380 9 N -0.352 5.352 10 C 0.073 3.927 11 C -0.010 4.010 12 O -0.320 6.320 13 C -0.147 4.147 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.304 5.304 17 C -0.361 4.361 18 H 0.080 0.920 19 C -0.200 4.200 20 N -0.550 5.550 21 Si 0.725 3.275 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.011 3.989 26 C 0.330 3.670 27 O -0.422 6.422 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.252 0.748 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.191 0.809 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.033 0.967 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.838 10.085 14.610 19.406 hybrid contribution -0.527 0.603 -0.182 0.821 sum -8.365 10.688 14.427 19.808 Atomic orbital electron populations 1.22209 0.77044 1.05336 1.03838 1.45302 1.09398 1.06795 1.59011 1.22075 0.94174 0.89257 0.93247 1.20676 0.92312 0.99733 1.12861 1.21995 1.01758 0.90322 0.84035 1.21404 0.91886 0.96678 1.15598 1.17161 0.86981 0.82676 0.77540 1.90775 1.12411 1.86250 1.48602 1.46177 1.11341 1.04529 1.73194 1.20889 0.93138 0.84027 0.94653 1.22571 0.90963 0.90741 0.96703 1.87254 1.52215 1.48377 1.44198 1.21590 0.97621 0.97042 0.98448 1.22177 0.98942 1.00411 0.96568 1.20754 0.88726 0.91510 0.94697 1.43967 1.38927 1.30125 1.17404 1.19105 1.38470 0.91644 0.86903 0.92040 1.24906 1.02741 0.95866 0.96526 1.70068 1.53646 1.19565 1.11768 0.86466 0.78135 0.83179 0.79726 1.20965 1.21811 1.21546 1.21301 0.92220 1.00790 0.84553 1.17151 0.88470 0.82745 0.78656 1.90613 1.68955 1.29108 1.53566 0.90548 0.89643 0.88404 0.81884 0.83164 0.83325 0.74849 0.95078 0.93981 0.80877 0.93129 0.91231 0.92260 0.93136 0.89916 0.96560 0.93945 0.96680 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.35 59.85 0.62 1.07 16 2 N -0.50 -5.63 2.98 -126.76 -0.38 -6.01 16 3 C 0.14 1.17 10.25 -16.85 -0.17 0.99 16 4 C -0.23 -2.20 9.99 -40.01 -0.40 -2.60 16 5 C 0.04 0.58 9.70 -38.71 -0.38 0.21 16 6 C -0.25 -4.39 5.92 -104.51 -0.62 -5.01 16 7 C 0.57 12.06 7.05 -12.68 -0.09 11.97 16 8 O -0.50 -11.49 10.83 -19.84 -0.21 -11.70 16 9 N -0.69 -14.42 4.52 -48.66 -0.22 -14.64 16 10 C 0.16 3.28 0.67 -131.70 -0.09 3.19 16 11 C 0.07 1.21 6.11 37.16 0.23 1.44 16 12 O -0.52 -9.44 9.22 -60.30 -0.56 -10.00 16 13 C -0.11 -2.02 4.74 -26.69 -0.13 -2.14 16 14 C -0.14 -2.95 5.91 -26.61 -0.16 -3.11 16 15 C 0.17 4.32 5.33 -3.71 -0.02 4.30 16 16 N -0.58 -15.84 2.91 -172.31 -0.50 -16.35 16 17 C -0.23 -6.89 9.57 -15.06 -0.14 -7.03 16 18 H 0.06 1.89 7.91 -52.49 -0.41 1.47 16 19 C 0.00 -0.09 4.83 -17.43 -0.08 -0.17 16 20 N -0.90 -27.69 11.34 55.49 0.63 -27.06 16 21 Si 0.89 23.13 29.60 -169.99 -5.03 18.10 16 22 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 C 0.14 3.39 4.78 -3.71 -0.02 3.37 16 26 C 0.53 8.64 7.44 -14.92 -0.11 8.53 16 27 O -0.54 -10.10 13.26 5.03 0.07 -10.03 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.39 8.00 -51.92 -0.42 -0.03 16 30 H 0.10 0.96 7.38 -51.93 -0.38 0.58 16 31 H 0.16 0.55 8.02 -52.48 -0.42 0.13 16 32 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.15 2.04 7.70 -52.49 -0.40 1.64 16 34 H 0.41 8.48 4.06 -40.82 -0.17 8.31 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.35 4.59 9.12 45.56 0.42 5.00 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.31 6.88 -51.93 -0.36 0.95 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 2.35 6.09 -51.93 -0.32 2.03 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 2.49 5.34 -51.92 -0.28 2.21 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -38.29 360.61 -8.01 -46.30 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.68 Total: 10.96 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: -1.56 Total: 15.00 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.47 Total: -64.06 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.70 Total: -31.73 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.03 Total: 18.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.29 -8.01 -46.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717027779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.943 kcal (2) G-P(sol) polarization free energy of solvation -38.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds