Wall clock time and date at job start Tue Mar 31 2020 18:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35433 * 119.47418 * 2 1 4 4 C 1.35758 * 121.23243 * 179.97438 * 3 2 1 5 5 C 1.39477 * 120.12713 * 359.79314 * 4 3 2 6 6 C 1.39331 * 118.95864 * 0.47773 * 5 4 3 7 7 C 1.47082 * 120.58879 * 179.77925 * 6 5 4 8 8 O 1.21652 * 119.99746 * 4.86091 * 7 6 5 9 9 N 1.34770 * 120.00579 * 184.86478 * 7 6 5 10 10 C 1.46499 * 120.00217 * 175.55722 * 9 7 6 11 11 C 1.52996 * 109.50454 * 66.32553 * 10 9 7 12 12 O 1.42900 * 109.47093 * 296.25561 * 11 10 9 13 13 C 1.53040 * 109.49737 * 186.39125 * 10 9 7 14 14 C 1.53047 * 109.53867 * 58.58408 * 13 10 9 15 15 C 1.53191 * 109.31245 * 61.36322 * 14 13 10 16 16 N 1.46928 * 108.77843 * 305.36549 * 15 14 13 17 17 C 1.36935 * 120.63310 * 233.33803 * 16 15 14 18 18 H 1.07997 * 120.00389 * 153.20479 * 17 16 15 19 19 C 1.38807 * 119.99692 * 333.19659 * 17 16 15 20 20 N 1.31620 * 120.00449 * 339.50276 * 19 17 16 21 21 Si 1.86798 * 119.99846 * 159.49965 * 19 17 16 22 22 H 1.48498 * 109.47150 * 60.00196 * 21 19 17 23 23 H 1.48500 * 109.47215 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47500 * 300.00143 * 21 19 17 25 25 C 1.46923 * 118.73382 * 53.60877 * 16 15 14 26 26 C 1.34656 * 119.46643 * 180.02562 * 2 1 3 27 27 O 1.21881 * 120.10272 * 359.97185 * 26 2 1 28 28 H 1.08999 * 109.47390 * 269.97748 * 1 2 3 29 29 H 1.09012 * 109.47089 * 29.97295 * 1 2 3 30 30 H 1.08996 * 109.47466 * 149.97574 * 1 2 3 31 31 H 1.08007 * 119.38514 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.93415 * 179.97438 * 4 3 2 33 33 H 1.08001 * 120.51733 * 180.26104 * 5 4 3 34 34 H 0.97002 * 119.99557 * 355.54375 * 9 7 6 35 35 H 1.09000 * 109.46866 * 56.24637 * 11 10 9 36 36 H 1.08993 * 109.47670 * 176.25022 * 11 10 9 37 37 H 0.96700 * 114.00205 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.46175 * 298.56183 * 13 10 9 39 39 H 1.09003 * 109.45272 * 178.59208 * 13 10 9 40 40 H 1.09006 * 109.49535 * 301.41412 * 14 13 10 41 41 H 1.09000 * 109.49670 * 181.31667 * 14 13 10 42 42 H 1.09006 * 109.58244 * 185.57882 * 15 14 13 43 43 H 1.09003 * 109.70528 * 65.22381 * 15 14 13 44 44 H 0.96999 * 120.00737 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.59092 * 66.18364 * 25 16 15 46 46 H 1.09008 * 109.58379 * 186.60537 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1314 1.1790 0.0000 4 6 3.4883 1.2207 0.0005 5 6 4.2250 0.0364 0.0054 6 6 3.5463 -1.1804 -0.0004 7 6 4.2874 -2.4508 -0.0004 8 8 5.5002 -2.4475 0.0940 9 7 3.6229 -3.6187 -0.1051 10 6 4.3655 -4.8777 -0.2031 11 6 5.1102 -5.1350 1.1084 12 8 6.0831 -4.1085 1.3130 13 6 3.3902 -6.0264 -0.4704 14 6 2.6206 -5.7537 -1.7649 15 6 3.6074 -5.6752 -2.9340 16 7 4.6342 -4.6723 -2.6198 17 6 4.9023 -3.6513 -3.4920 18 1 5.2981 -2.7164 -3.1237 19 6 4.6655 -3.8180 -4.8495 20 7 4.5780 -5.0286 -5.3586 21 14 4.4709 -2.3242 -5.9540 22 1 5.7095 -1.5066 -5.9037 23 1 4.2271 -2.7689 -7.3497 24 1 3.3208 -1.5094 -5.4866 25 6 5.3720 -4.7893 -1.3546 26 6 2.1274 -1.1724 -0.0005 27 8 1.5101 -2.2233 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8903 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.5728 2.1035 0.0004 32 1 3.9983 2.1727 0.0001 33 1 5.3047 0.0622 0.0101 34 1 2.6530 -3.6256 -0.1153 35 1 4.4005 -5.1329 1.9356 36 1 5.6084 -6.1032 1.0595 37 1 6.5941 -4.2076 2.1279 38 1 2.6881 -6.1073 0.3593 39 1 3.9459 -6.9591 -0.5681 40 1 2.0846 -4.8086 -1.6772 41 1 1.9097 -6.5607 -1.9424 42 1 3.0772 -5.3836 -3.8407 43 1 4.0789 -6.6466 -3.0829 44 1 4.4121 -5.1452 -6.3071 45 1 5.9872 -5.6890 -1.3722 46 1 6.0062 -3.9132 -1.2191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717027779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:05 Heat of formation + Delta-G solvation = -66.698535 kcal Electronic energy + Delta-G solvation = -31625.494754 eV Core-core repulsion = 27516.148754 eV Total energy + Delta-G solvation = -4109.346000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.46601 -40.98189 -38.65297 -38.17623 -37.23093 -35.50509 -35.31845 -33.58904 -32.31298 -31.56985 -30.60102 -28.57281 -27.31950 -26.56330 -25.77220 -23.89990 -23.63780 -22.64160 -21.84637 -20.07814 -19.07733 -18.57452 -18.33224 -17.91970 -17.76177 -17.14063 -16.88618 -16.59484 -16.40489 -16.06802 -15.70410 -15.46101 -15.19710 -15.02531 -14.58486 -14.45170 -14.28784 -13.94089 -13.86142 -13.60430 -13.49158 -13.32399 -13.13550 -12.98763 -12.88647 -12.77917 -12.70577 -12.42794 -12.29561 -11.96869 -11.80003 -11.39304 -11.32862 -11.05013 -10.92741 -10.71728 -10.52446 -10.27342 -9.53137 -8.99890 -8.63535 -7.87874 -5.28091 -0.43588 0.83803 1.36917 1.40225 1.47842 1.59411 2.05184 2.48307 2.64238 2.96886 3.23227 3.42536 3.59773 3.70141 3.81749 3.97266 4.03144 4.12911 4.14555 4.23887 4.30586 4.37077 4.41258 4.46398 4.46925 4.65008 4.80114 4.81435 4.85102 4.89810 4.94261 4.98818 5.04298 5.08216 5.25061 5.31446 5.39806 5.48806 5.56023 5.61584 5.70472 5.93710 6.04266 6.38232 6.79842 7.08564 7.14763 7.19386 7.80749 7.88003 8.39817 9.17925 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.006088 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.957957 B = 4598.180848 C = 5936.432476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.492 5.492 3 C 0.177 3.823 4 C -0.243 4.243 5 C 0.056 3.944 6 C -0.318 4.318 7 C 0.559 3.441 8 O -0.539 6.539 9 N -0.696 5.696 10 C 0.158 3.842 11 C 0.075 3.925 12 O -0.544 6.544 13 C -0.103 4.103 14 C -0.129 4.129 15 C 0.176 3.824 16 N -0.596 5.596 17 C -0.246 4.246 18 H 0.041 0.959 19 C -0.051 4.051 20 N -0.931 5.931 21 Si 0.960 3.040 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.283 1.283 25 C 0.143 3.857 26 C 0.515 3.485 27 O -0.581 6.581 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.233 0.767 32 H 0.194 0.806 33 H 0.138 0.862 34 H 0.405 0.595 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.368 0.632 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.001 0.999 44 H 0.250 0.750 45 H 0.006 0.994 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.116 13.606 16.587 23.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.198 5.198 3 C 0.047 3.953 4 C -0.264 4.264 5 C 0.032 3.968 6 C -0.325 4.325 7 C 0.347 3.653 8 O -0.419 6.419 9 N -0.356 5.356 10 C 0.070 3.930 11 C -0.004 4.004 12 O -0.349 6.349 13 C -0.141 4.141 14 C -0.168 4.168 15 C 0.050 3.950 16 N -0.318 5.318 17 C -0.376 4.376 18 H 0.059 0.941 19 C -0.246 4.246 20 N -0.578 5.578 21 Si 0.788 3.212 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.209 1.209 25 C 0.016 3.984 26 C 0.319 3.681 27 O -0.467 6.467 28 H 0.114 0.886 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.249 0.751 32 H 0.211 0.789 33 H 0.156 0.844 34 H 0.251 0.749 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.214 0.786 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.019 0.981 44 H 0.059 0.941 45 H 0.024 0.976 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.050 13.082 15.893 22.907 hybrid contribution 0.167 -0.129 -0.545 0.584 sum -9.883 12.953 15.348 22.383 Atomic orbital electron populations 1.22534 0.74573 1.06330 1.05483 1.45460 1.11054 1.06388 1.56912 1.23209 0.94284 0.90024 0.87775 1.21152 0.93053 0.99415 1.12824 1.22241 1.01747 0.91091 0.81672 1.21205 0.93084 0.96159 1.22052 1.17805 0.87042 0.83960 0.76542 1.90723 1.13734 1.87001 1.50458 1.46276 1.11246 1.04779 1.73326 1.20870 0.92792 0.84957 0.94370 1.22495 0.91248 0.91169 0.95505 1.87225 1.52805 1.49044 1.45791 1.21578 0.97738 0.96702 0.98070 1.21978 0.98207 1.00745 0.95827 1.20608 0.88900 0.89995 0.95475 1.44124 1.39809 1.29912 1.17969 1.19154 1.38875 0.91740 0.87843 0.94120 1.25643 1.02641 0.98746 0.97568 1.70203 1.54353 1.21352 1.11884 0.85443 0.78179 0.79777 0.77801 1.20333 1.21115 1.20924 1.21250 0.93051 0.98750 0.85333 1.17050 0.88134 0.83873 0.79008 1.90550 1.69424 1.30740 1.55954 0.88602 0.84991 0.91067 0.75109 0.78912 0.84420 0.74950 0.93019 0.92109 0.78573 0.89775 0.89903 0.93853 0.90212 0.93290 0.98113 0.94098 0.97624 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 10.35 127.77 1.32 1.93 16 2 N -0.49 -9.74 2.98 -673.17 -2.00 -11.74 16 3 C 0.18 1.97 10.25 83.56 0.86 2.83 16 4 C -0.24 -3.68 9.99 21.99 0.22 -3.46 16 5 C 0.06 1.56 9.70 22.83 0.22 1.78 16 6 C -0.32 -11.65 5.92 -19.79 -0.12 -11.76 16 7 C 0.56 25.02 7.05 86.56 0.61 25.63 16 8 O -0.54 -26.34 10.83 19.78 0.21 -26.12 16 9 N -0.70 -30.28 4.52 -426.12 -1.93 -32.20 16 10 C 0.16 6.59 0.67 3.68 0.00 6.59 16 11 C 0.08 2.60 6.11 71.98 0.44 3.04 16 12 O -0.54 -20.41 9.22 -125.01 -1.15 -21.56 16 13 C -0.10 -3.75 4.74 30.62 0.15 -3.60 16 14 C -0.13 -5.41 5.91 30.67 0.18 -5.22 16 15 C 0.18 9.37 5.33 86.36 0.46 9.83 16 16 N -0.60 -34.14 2.91 -699.08 -2.04 -36.18 16 17 C -0.25 -15.41 9.57 84.03 0.80 -14.60 16 18 H 0.04 2.67 7.91 -2.91 -0.02 2.65 16 19 C -0.05 -3.13 4.83 84.86 0.41 -2.72 16 20 N -0.93 -59.00 11.34 21.65 0.25 -58.76 16 21 Si 0.96 48.84 29.60 68.60 2.03 50.87 16 22 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 24 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 25 C 0.14 7.37 4.78 86.36 0.41 7.78 16 26 C 0.52 16.98 7.44 85.16 0.63 17.61 16 27 O -0.58 -22.47 13.26 -4.93 -0.07 -22.53 16 28 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.13 0.39 8.00 -2.38 -0.02 0.37 16 30 H 0.07 1.31 7.38 -2.39 -0.02 1.29 16 31 H 0.23 -0.49 8.02 -2.91 -0.02 -0.52 16 32 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.14 3.97 7.70 -2.91 -0.02 3.95 16 34 H 0.41 17.63 4.06 -92.79 -0.38 17.25 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.37 9.86 9.12 -74.06 -0.68 9.18 16 38 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.04 1.97 6.88 -2.38 -0.02 1.95 16 41 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.05 2.91 6.09 -2.38 -0.01 2.90 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 46 H 0.06 3.55 5.34 -2.38 -0.01 3.54 16 Total: -1.00 -93.31 360.61 1.88 -91.44 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.03 Total: 31.13 kcal Atomic # 6 Polarization: 29.05 SS G_CDS: 6.60 Total: 35.66 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -5.72 Total: -138.88 kcal Atomic # 8 Polarization: -69.21 SS G_CDS: -1.00 Total: -70.22 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -93.31 1.88 -91.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717027779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.737 kcal (2) G-P(sol) polarization free energy of solvation -93.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds