Wall clock time and date at job start Tue Mar 31 2020 18:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34596 * 119.48265 * 2 1 4 4 C 1.37998 * 120.46124 * 180.02562 * 3 2 1 5 5 C 1.47452 * 120.25569 * 179.97438 * 4 3 2 6 6 O 1.21602 * 120.00515 * 260.58664 * 5 4 3 7 7 N 1.34784 * 119.99830 * 80.58527 * 5 4 3 8 8 C 1.46925 * 120.63251 * 354.75825 * 7 5 4 9 9 C 1.53194 * 108.77424 * 126.37061 * 8 7 5 10 10 C 1.53037 * 109.31442 * 54.63160 * 9 8 7 11 11 C 1.53043 * 109.54123 * 298.63723 * 10 9 8 12 12 C 1.53002 * 109.49774 * 181.31333 * 11 10 9 13 13 O 1.42893 * 109.47044 * 180.15955 * 12 11 10 14 14 N 1.46497 * 109.52051 * 301.39616 * 11 10 9 15 15 C 1.36939 * 119.99840 * 179.97438 * 14 11 10 16 16 H 1.08007 * 120.00006 * 359.97438 * 15 14 11 17 17 C 1.38806 * 120.00105 * 179.97438 * 15 14 11 18 18 N 1.31620 * 120.00275 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00043 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47032 * 89.99906 * 19 17 15 21 21 H 1.48497 * 109.47015 * 209.99616 * 19 17 15 22 22 H 1.48493 * 109.47052 * 329.99811 * 19 17 15 23 23 C 1.46928 * 120.62681 * 174.73500 * 7 5 4 24 24 C 1.41597 * 119.48267 * 0.22466 * 4 3 2 25 25 C 1.35966 * 119.00888 * 359.47282 * 24 4 3 26 26 C 1.34546 * 119.47396 * 179.97438 * 2 1 3 27 27 O 1.21957 * 119.75019 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47421 * 90.00311 * 1 2 3 29 29 H 1.09000 * 109.47215 * 210.00561 * 1 2 3 30 30 H 1.09004 * 109.47024 * 330.00362 * 1 2 3 31 31 H 1.07998 * 119.76727 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.58545 * 246.15309 * 8 7 5 33 33 H 1.09001 * 109.58222 * 6.58441 * 8 7 5 34 34 H 1.08999 * 109.49922 * 174.58769 * 9 8 7 35 35 H 1.09001 * 109.49537 * 294.68141 * 9 8 7 36 36 H 1.09001 * 109.45925 * 178.61160 * 10 9 8 37 37 H 1.09005 * 109.45966 * 58.65837 * 10 9 8 38 38 H 1.09009 * 109.46841 * 60.16252 * 12 11 10 39 39 H 1.08997 * 109.47253 * 300.16419 * 12 11 10 40 40 H 0.96703 * 114.00478 * 180.02562 * 13 12 11 41 41 H 0.96997 * 120.00671 * 359.91688 * 14 11 10 42 42 H 0.97001 * 120.00238 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.58672 * 113.84175 * 23 7 5 44 44 H 1.09003 * 109.59141 * 353.41807 * 23 7 5 45 45 H 1.08002 * 120.48854 * 179.72950 * 24 4 3 46 46 H 1.08002 * 120.24751 * 180.24581 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5072 1.1952 -0.0005 5 6 4.2283 2.4814 -0.0011 6 8 4.6755 2.9274 -1.0402 7 7 4.3917 3.1629 1.1502 8 6 3.7603 2.6965 2.3923 9 6 4.8366 2.5697 3.4750 10 6 5.5793 3.9011 3.6088 11 6 6.2652 4.2401 2.2834 12 6 7.0344 5.5548 2.4280 13 8 7.6714 5.8727 1.1891 14 7 7.1951 3.1664 1.9247 15 6 7.9263 3.2513 0.7700 16 1 7.8172 4.1096 0.1235 17 6 8.8078 2.2343 0.4304 18 7 9.5103 2.3155 -0.6797 19 14 8.9961 0.7494 1.5482 20 1 8.0228 -0.2982 1.1477 21 1 10.3761 0.2136 1.4312 22 1 8.7391 1.1524 2.9540 23 6 5.2051 4.3859 1.1872 24 6 4.2250 -0.0253 -0.0059 25 6 3.5344 -1.1965 0.0005 26 6 2.1270 -1.1713 0.0005 27 8 1.5029 -2.2191 0.0015 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.5752 2.0998 -0.0004 32 1 3.0050 3.4151 2.7103 33 1 3.2956 1.7251 2.2234 34 1 4.3679 2.3174 4.4262 35 1 5.5416 1.7862 3.1972 36 1 6.3293 3.8210 4.3958 37 1 4.8698 4.6888 3.8625 38 1 7.7885 5.4506 3.2082 39 1 6.3423 6.3531 2.6961 40 1 8.1789 6.6957 1.2075 41 1 7.2935 2.3958 2.5055 42 1 10.1260 1.6046 -0.9172 43 1 4.5675 5.2422 1.4069 44 1 5.6936 4.5292 0.2233 45 1 5.3050 -0.0258 -0.0108 46 1 4.0617 -2.1390 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717255699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:56 Heat of formation + Delta-G solvation = -77.923352 kcal Electronic energy + Delta-G solvation = -31039.709963 eV Core-core repulsion = 26929.877218 eV Total energy + Delta-G solvation = -4109.832744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.60901 -41.16963 -39.35632 -37.97120 -37.10642 -35.78008 -35.52409 -33.94425 -32.64184 -31.55505 -30.77043 -28.77748 -26.97271 -26.50901 -25.25836 -25.07409 -24.01637 -22.90875 -21.30878 -19.90004 -19.63134 -18.69873 -18.53756 -17.91479 -17.83197 -17.42872 -17.03493 -16.83764 -16.28972 -16.04325 -15.84969 -15.50378 -15.36386 -14.98423 -14.71036 -14.57457 -14.39967 -14.27554 -14.02816 -13.86955 -13.54034 -13.42500 -13.32844 -13.12420 -12.98889 -12.84347 -12.70207 -12.50642 -12.04760 -11.87383 -11.73965 -11.39107 -11.32897 -11.27837 -11.20870 -10.99345 -10.78243 -10.53091 -9.57681 -9.10798 -9.03707 -7.80399 -5.11263 -0.31417 0.43763 1.30282 1.35295 1.42647 1.43123 1.65074 2.20620 2.46827 2.57316 3.36736 3.43050 3.52093 3.56428 3.73628 3.75675 3.84338 3.99098 4.04532 4.12011 4.21267 4.32860 4.38797 4.44429 4.58270 4.65341 4.68173 4.73274 4.78672 4.80680 4.83946 4.87879 4.92214 5.05438 5.05974 5.09908 5.22664 5.29180 5.46202 5.47604 5.73862 5.80282 6.15960 6.47611 6.55807 6.77041 7.15168 7.30263 7.34700 8.02597 8.17825 9.42608 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.004776 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.680618 B = 5861.592197 C = 6838.740946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.481 5.481 3 C 0.203 3.797 4 C -0.243 4.243 5 C 0.573 3.427 6 O -0.580 6.580 7 N -0.585 5.585 8 C 0.104 3.896 9 C -0.134 4.134 10 C -0.111 4.111 11 C 0.179 3.821 12 C 0.073 3.927 13 O -0.574 6.574 14 N -0.732 5.732 15 C -0.162 4.162 16 H 0.079 0.921 17 C -0.084 4.084 18 N -0.997 5.997 19 Si 0.931 3.069 20 H -0.289 1.289 21 H -0.309 1.309 22 H -0.250 1.250 23 C 0.117 3.883 24 C 0.014 3.986 25 C -0.255 4.255 26 C 0.511 3.489 27 O -0.585 6.585 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.134 0.866 31 H 0.218 0.782 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.373 0.627 41 H 0.359 0.641 42 H 0.244 0.756 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.111 0.889 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.384 4.712 13.305 26.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.187 5.187 3 C 0.071 3.929 4 C -0.251 4.251 5 C 0.360 3.640 6 O -0.459 6.459 7 N -0.316 5.316 8 C -0.017 4.017 9 C -0.172 4.172 10 C -0.149 4.149 11 C 0.088 3.912 12 C -0.007 4.007 13 O -0.380 6.380 14 N -0.375 5.375 15 C -0.294 4.294 16 H 0.097 0.903 17 C -0.272 4.272 18 N -0.651 5.651 19 Si 0.761 3.239 20 H -0.216 1.216 21 H -0.237 1.237 22 H -0.175 1.175 23 C -0.007 4.007 24 C -0.008 4.008 25 C -0.277 4.277 26 C 0.315 3.685 27 O -0.471 6.471 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.153 0.847 31 H 0.235 0.765 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.221 0.779 41 H 0.192 0.808 42 H 0.053 0.947 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.129 0.871 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.861 3.790 12.453 26.307 hybrid contribution 1.981 -0.860 -0.062 2.161 sum -20.879 2.930 12.391 24.456 Atomic orbital electron populations 1.22627 0.73764 1.07080 1.05612 1.45184 1.11292 1.05737 1.56493 1.22529 0.90970 0.91025 0.88346 1.19264 0.93725 0.93298 1.18827 1.18058 0.79064 0.83377 0.83521 1.90834 1.51358 1.69786 1.33924 1.47943 1.49037 1.26064 1.08555 1.22055 0.95503 1.01690 0.82458 1.21911 0.97948 0.97182 1.00149 1.21698 1.00064 0.98951 0.94203 1.20455 0.88657 0.87665 0.94412 1.22734 0.95443 0.96680 0.85847 1.86884 1.70389 1.45926 1.34761 1.42836 1.48105 1.22219 1.24317 1.19243 1.11328 1.02319 0.96520 0.90312 1.25332 1.01383 1.01508 0.99015 1.69896 1.32731 1.35106 1.27383 0.85739 0.76010 0.81589 0.80532 1.21614 1.23737 1.17493 1.21937 0.92387 0.85559 1.00866 1.21259 1.00165 0.91399 0.88005 1.21947 0.92825 0.99604 1.13281 1.17101 0.89109 0.83195 0.79087 1.90896 1.70008 1.31283 1.54918 0.89244 0.89420 0.84733 0.76531 0.87010 0.89481 0.87097 0.94478 0.91030 0.87178 0.94400 0.91090 0.77924 0.80769 0.94663 0.89348 0.93210 0.87127 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 10.33 127.77 1.32 1.78 16 2 N -0.48 -8.88 2.95 -673.11 -1.99 -10.87 16 3 C 0.20 3.53 9.37 84.21 0.79 4.32 16 4 C -0.24 -6.82 3.90 -20.08 -0.08 -6.90 16 5 C 0.57 20.42 7.10 86.67 0.62 21.04 16 6 O -0.58 -28.12 16.54 -4.04 -0.07 -28.18 16 7 N -0.59 -17.01 2.89 -822.74 -2.38 -19.39 16 8 C 0.10 1.84 6.30 86.36 0.54 2.38 16 9 C -0.13 -2.55 5.91 30.67 0.18 -2.37 16 10 C -0.11 -2.26 4.76 30.62 0.15 -2.11 16 11 C 0.18 5.67 0.68 3.68 0.00 5.68 16 12 C 0.07 2.17 6.08 71.98 0.44 2.61 16 13 O -0.57 -21.88 10.10 -148.98 -1.50 -23.39 16 14 N -0.73 -31.99 4.55 -302.99 -1.38 -33.37 16 15 C -0.16 -9.25 8.70 84.03 0.73 -8.52 16 16 H 0.08 5.11 5.50 -2.91 -0.02 5.10 16 17 C -0.08 -5.20 5.50 84.86 0.47 -4.73 16 18 N -1.00 -68.43 13.97 21.65 0.30 -68.13 16 19 Si 0.93 47.63 27.74 68.60 1.90 49.53 16 20 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 21 H -0.31 -16.50 7.11 99.48 0.71 -15.79 16 22 H -0.25 -11.24 6.52 99.48 0.65 -10.60 16 23 C 0.12 3.85 4.84 86.36 0.42 4.27 16 24 C 0.01 0.45 9.86 22.57 0.22 0.68 16 25 C -0.25 -7.56 9.97 22.36 0.22 -7.34 16 26 C 0.51 14.19 7.40 84.89 0.63 14.82 16 27 O -0.59 -19.64 16.58 -5.17 -0.09 -19.73 16 28 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.09 7.36 -2.39 -0.02 1.07 16 30 H 0.13 0.06 8.00 -2.39 -0.02 0.04 16 31 H 0.22 1.63 8.02 -2.91 -0.02 1.61 16 32 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.41 5.89 -2.39 -0.01 1.40 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 0.99 6.75 -2.39 -0.02 0.97 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.37 10.63 9.12 -74.05 -0.68 9.96 16 41 H 0.36 15.45 4.29 -92.71 -0.40 15.05 16 42 H 0.24 16.29 8.31 -92.71 -0.77 15.52 16 43 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.05 2.30 5.73 -2.39 -0.01 2.29 16 45 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 46 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -97.37 366.97 1.35 -96.02 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.10 Total: 31.91 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 6.65 Total: 25.59 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -5.44 Total: -131.75 kcal Atomic # 8 Polarization: -69.64 SS G_CDS: -1.66 Total: -71.30 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.90 Total: 49.53 kcal Total: -97.37 1.35 -96.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717255699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.100 kcal (2) G-P(sol) polarization free energy of solvation -97.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds