Wall clock time and date at job start Tue Mar 31 2020 18:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35577 * 118.80133 * 2 1 4 4 C 1.34873 * 121.79240 * 180.02562 * 3 2 1 5 5 C 1.41661 * 119.34150 * 359.97438 * 4 3 2 6 6 O 1.22085 * 121.06852 * 180.02562 * 5 4 3 7 7 C 1.47100 * 117.86407 * 359.97438 * 5 4 3 8 8 C 1.47291 * 120.88356 * 179.97438 * 7 5 4 9 9 O 1.21620 * 119.99916 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99913 * 180.02562 * 8 7 5 11 11 C 1.46498 * 119.99869 * 174.68803 * 10 8 7 12 12 C 1.52994 * 109.54460 * 304.15581 * 11 10 8 13 13 N 1.46504 * 109.47214 * 305.58406 * 12 11 10 14 14 C 1.36939 * 120.00442 * 175.02375 * 13 12 11 15 15 H 1.07995 * 119.99448 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00121 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99968 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47160 * 59.99615 * 18 16 14 20 20 H 1.48502 * 109.47258 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46931 * 299.99495 * 18 16 14 22 22 C 1.53176 * 109.54550 * 183.97759 * 11 10 8 23 23 C 1.53283 * 109.06206 * 297.03107 * 22 11 10 24 24 O 1.42897 * 109.46121 * 302.44360 * 23 22 11 25 25 C 1.42906 * 114.10139 * 61.15649 * 24 23 22 26 26 C 1.53093 * 109.41206 * 298.84734 * 25 24 23 27 27 C 1.34344 * 118.80356 * 180.23410 * 2 1 3 28 28 H 1.08996 * 109.46649 * 89.99805 * 1 2 3 29 29 H 1.08994 * 109.47445 * 210.00233 * 1 2 3 30 30 H 1.09000 * 109.46485 * 330.00363 * 1 2 3 31 31 H 1.07991 * 119.10572 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.32575 * 179.97438 * 4 3 2 33 33 H 0.97007 * 119.99796 * 354.40694 * 10 8 7 34 34 H 1.09000 * 109.47462 * 65.58018 * 12 11 10 35 35 H 1.08994 * 109.47394 * 185.58610 * 12 11 10 36 36 H 0.96997 * 119.99747 * 355.02465 * 13 12 11 37 37 H 0.97000 * 120.00033 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.52139 * 57.01319 * 22 11 10 39 39 H 1.08989 * 109.52613 * 177.20523 * 22 11 10 40 40 H 1.09003 * 109.45881 * 182.44648 * 23 22 11 41 41 H 1.09005 * 109.47065 * 62.44807 * 23 22 11 42 42 H 1.09000 * 109.48049 * 178.86097 * 25 24 23 43 43 H 1.08998 * 109.48345 * 58.83381 * 25 24 23 44 44 H 1.09001 * 109.52232 * 297.69516 * 26 25 24 45 45 H 1.09001 * 109.56699 * 177.54358 * 26 25 24 46 46 H 1.08010 * 119.81082 * 0.02847 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4652 1.2584 -0.0005 5 6 4.2228 0.0615 -0.0005 6 8 5.4434 0.0884 -0.0005 7 6 3.4917 -1.2150 0.0006 8 6 4.2128 -2.4993 0.0001 9 8 5.4289 -2.5139 -0.0008 10 7 3.5250 -3.6583 0.0007 11 6 4.2374 -4.9329 -0.1173 12 6 5.0948 -4.9247 -1.3844 13 7 4.2541 -4.6048 -2.5408 14 6 4.8223 -4.4397 -3.7757 15 1 5.8903 -4.5448 -3.8971 16 6 4.0258 -4.1361 -4.8713 17 7 2.7243 -4.0075 -4.7232 18 14 4.8009 -3.9115 -6.5559 19 1 5.4945 -5.1632 -6.9525 20 1 3.7433 -3.5950 -7.5492 21 1 5.7810 -2.7971 -6.5053 22 6 3.2257 -6.0807 -0.1906 23 6 2.4264 -6.1277 1.1165 24 8 3.3234 -6.2846 2.2177 25 6 4.2622 -5.2169 2.3623 26 6 5.1352 -5.1334 1.1075 27 6 2.1124 -1.1772 -0.0048 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.5445 2.1029 0.0004 32 1 3.9611 2.2179 -0.0009 33 1 2.5585 -3.6487 0.0833 34 1 5.8796 -4.1746 -1.2873 35 1 5.5462 -5.9069 -1.5241 36 1 3.2950 -4.5100 -2.4317 37 1 2.1676 -3.7957 -5.4888 38 1 2.5482 -5.9160 -1.0285 39 1 3.7541 -7.0239 -0.3282 40 1 1.7342 -6.9693 1.0887 41 1 1.8661 -5.2000 1.2334 42 1 4.8925 -5.4024 3.2321 43 1 3.7263 -4.2772 2.4955 44 1 5.7023 -6.0576 0.9962 45 1 5.8230 -4.2925 1.1966 46 1 1.5499 -2.0993 -0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717266249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:59 Heat of formation + Delta-G solvation = -52.144892 kcal Electronic energy + Delta-G solvation = -30778.570436 eV Core-core repulsion = 26669.855529 eV Total energy + Delta-G solvation = -4108.714906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05036 -40.15613 -38.21285 -37.43230 -35.50951 -33.61233 -32.73577 -32.40078 -30.99405 -30.74293 -30.24158 -27.10397 -26.45097 -24.76953 -23.68338 -23.35690 -22.72993 -21.44466 -20.96879 -18.98102 -18.17173 -17.30538 -17.13619 -16.78586 -16.05551 -15.88672 -15.84621 -15.55950 -15.24966 -14.64666 -14.47529 -14.32318 -14.15469 -13.88743 -13.63464 -13.35064 -13.21988 -13.03333 -12.84900 -12.68075 -12.37787 -12.28908 -12.23075 -12.06197 -11.72786 -11.43631 -11.13688 -10.85845 -10.74288 -10.43759 -10.27229 -10.03982 -9.71113 -9.65687 -9.52127 -9.32727 -8.90804 -8.67475 -8.43967 -7.87313 -6.79021 -5.70280 -2.94589 0.96221 1.36495 2.32817 3.34761 3.49937 3.52590 3.53566 3.56900 3.98732 4.08763 4.16910 4.31400 4.58347 4.66669 4.73430 4.82909 4.89710 5.02983 5.08385 5.10500 5.12757 5.22550 5.27001 5.40564 5.51034 5.62580 5.66484 5.76105 5.79356 5.82804 6.01447 6.13104 6.16271 6.29322 6.38196 6.41478 6.53011 6.56204 6.64113 6.72758 7.01168 7.19397 7.29871 7.80450 8.01319 8.34719 8.50188 8.88064 9.61954 10.19360 10.55814 11.53326 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.005822 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.287714 B = 4808.451564 C = 6906.836577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.476 5.476 3 C 0.125 3.875 4 C -0.268 4.268 5 C 0.406 3.594 6 O -0.478 6.478 7 C -0.284 4.284 8 C 0.584 3.416 9 O -0.502 6.502 10 N -0.720 5.720 11 C 0.179 3.821 12 C 0.140 3.860 13 N -0.722 5.722 14 C -0.223 4.223 15 H 0.068 0.932 16 C -0.017 4.017 17 N -0.940 5.940 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.293 1.293 21 H -0.287 1.287 22 C -0.155 4.155 23 C 0.062 3.938 24 O -0.386 6.386 25 C 0.067 3.933 26 C -0.164 4.164 27 C 0.169 3.831 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.151 0.849 33 H 0.385 0.615 34 H 0.052 0.948 35 H 0.020 0.980 36 H 0.380 0.620 37 H 0.251 0.749 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.895 5.986 15.936 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.163 5.163 3 C 0.001 3.999 4 C -0.293 4.293 5 C 0.291 3.709 6 O -0.358 6.358 7 C -0.295 4.295 8 C 0.371 3.629 9 O -0.375 6.375 10 N -0.373 5.373 11 C 0.093 3.907 12 C 0.012 3.988 13 N -0.366 5.366 14 C -0.354 4.354 15 H 0.086 0.914 16 C -0.212 4.212 17 N -0.591 5.591 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.214 1.214 22 C -0.193 4.193 23 C -0.014 4.014 24 O -0.305 6.305 25 C -0.010 4.010 26 C -0.203 4.203 27 C 0.039 3.961 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.179 0.821 32 H 0.168 0.832 33 H 0.219 0.781 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.213 0.787 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.401 5.860 15.899 19.882 hybrid contribution -0.718 0.488 -1.436 1.677 sum -11.119 6.348 14.463 19.316 Atomic orbital electron populations 1.22465 0.76370 1.05201 1.04561 1.42581 1.08452 1.04488 1.60812 1.21627 0.94299 0.88271 0.95695 1.22472 0.93173 1.01398 1.12249 1.18173 0.89328 0.86994 0.76392 1.90817 1.14297 1.88941 1.41775 1.22602 0.92139 0.97540 1.17228 1.17240 0.87150 0.82149 0.76401 1.90773 1.12877 1.86565 1.47334 1.45836 1.09267 1.05540 1.76688 1.20509 0.92351 0.82020 0.95836 1.21102 0.93999 0.98474 0.85225 1.42152 1.06064 1.85130 1.03275 1.19217 0.92344 1.38538 0.85333 0.91419 1.24623 0.95527 1.03261 0.97800 1.69628 1.03009 1.56771 1.29657 0.86283 0.77842 0.77993 0.84270 1.21372 1.21866 1.21381 1.22475 0.99326 0.99119 0.98356 1.22610 0.91632 1.01133 0.86067 1.87890 1.47417 1.46085 1.49111 1.22508 0.90872 0.89804 0.97773 1.22567 0.99274 1.04141 0.94355 1.22155 0.93308 0.88888 0.91785 0.89931 0.89121 0.89182 0.82101 0.83154 0.78143 0.93010 0.96213 0.78650 0.93914 0.89268 0.89495 0.88906 0.93899 0.89293 0.93510 0.90467 0.88601 0.82054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.19 10.53 59.85 0.63 0.82 16 2 N -0.48 -3.89 2.97 -124.39 -0.37 -4.26 16 3 C 0.13 1.06 10.17 -17.09 -0.17 0.89 16 4 C -0.27 -3.44 10.01 -39.47 -0.40 -3.83 16 5 C 0.41 7.54 6.96 -34.68 -0.24 7.30 16 6 O -0.48 -11.29 16.41 -15.17 -0.25 -11.53 16 7 C -0.28 -4.78 6.05 -102.72 -0.62 -5.41 16 8 C 0.58 11.35 7.18 -12.58 -0.09 11.26 16 9 O -0.50 -11.98 11.88 -14.76 -0.18 -12.15 16 10 N -0.72 -11.54 3.70 -48.55 -0.18 -11.72 16 11 C 0.18 3.03 0.32 -131.64 -0.04 2.98 16 12 C 0.14 3.11 4.79 -4.04 -0.02 3.09 16 13 N -0.72 -18.58 5.21 -59.91 -0.31 -18.89 16 14 C -0.22 -6.52 9.99 -15.06 -0.15 -6.67 16 15 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 17 N -0.94 -28.10 13.06 55.49 0.72 -27.38 16 18 Si 0.90 23.41 29.55 -169.99 -5.02 18.39 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 C -0.15 -2.26 4.84 -26.49 -0.13 -2.39 16 23 C 0.06 0.74 6.67 37.30 0.25 0.99 16 24 O -0.39 -5.24 10.77 -35.23 -0.38 -5.62 16 25 C 0.07 0.89 6.68 37.21 0.25 1.14 16 26 C -0.16 -2.57 4.82 -26.59 -0.13 -2.70 16 27 C 0.17 1.90 9.79 -16.55 -0.16 1.73 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.17 7.96 -51.93 -0.41 -0.24 16 30 H 0.09 0.09 7.96 -51.93 -0.41 -0.33 16 31 H 0.16 0.62 7.97 -52.49 -0.42 0.20 16 32 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.38 4.89 5.49 -40.82 -0.22 4.66 16 34 H 0.05 1.32 6.25 -51.93 -0.32 0.99 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.38 9.77 6.51 -40.82 -0.27 9.51 16 37 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.09 1.41 7.22 -51.93 -0.37 1.03 16 39 H 0.09 1.30 8.14 -51.94 -0.42 0.88 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.04 0.44 7.01 -51.93 -0.36 0.07 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.10 1.72 6.26 -51.93 -0.32 1.39 16 46 H 0.16 1.32 6.37 -52.48 -0.33 0.98 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -41.30 368.97 -7.89 -49.19 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.37 Total: 9.82 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -1.12 Total: 8.58 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.14 Total: -62.24 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.80 Total: -29.31 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -41.30 -7.89 -49.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717266249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.956 kcal (2) G-P(sol) polarization free energy of solvation -41.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds