Wall clock time and date at job start Tue Mar 31 2020 18:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35577 * 118.80133 * 2 1 4 4 C 1.34873 * 121.79240 * 180.02562 * 3 2 1 5 5 C 1.41661 * 119.34150 * 359.97438 * 4 3 2 6 6 O 1.22085 * 121.06852 * 180.02562 * 5 4 3 7 7 C 1.47100 * 117.86407 * 359.97438 * 5 4 3 8 8 C 1.47291 * 120.88356 * 179.97438 * 7 5 4 9 9 O 1.21620 * 119.99916 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99913 * 180.02562 * 8 7 5 11 11 C 1.46498 * 119.99869 * 174.68803 * 10 8 7 12 12 C 1.52994 * 109.54460 * 304.15581 * 11 10 8 13 13 N 1.46504 * 109.47214 * 305.58406 * 12 11 10 14 14 C 1.36939 * 120.00442 * 175.02375 * 13 12 11 15 15 H 1.07995 * 119.99448 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00121 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99968 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47160 * 59.99615 * 18 16 14 20 20 H 1.48502 * 109.47258 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46931 * 299.99495 * 18 16 14 22 22 C 1.53176 * 109.54550 * 183.97759 * 11 10 8 23 23 C 1.53283 * 109.06206 * 297.03107 * 22 11 10 24 24 O 1.42897 * 109.46121 * 302.44360 * 23 22 11 25 25 C 1.42906 * 114.10139 * 61.15649 * 24 23 22 26 26 C 1.53093 * 109.41206 * 298.84734 * 25 24 23 27 27 C 1.34344 * 118.80356 * 180.23410 * 2 1 3 28 28 H 1.08996 * 109.46649 * 89.99805 * 1 2 3 29 29 H 1.08994 * 109.47445 * 210.00233 * 1 2 3 30 30 H 1.09000 * 109.46485 * 330.00363 * 1 2 3 31 31 H 1.07991 * 119.10572 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.32575 * 179.97438 * 4 3 2 33 33 H 0.97007 * 119.99796 * 354.40694 * 10 8 7 34 34 H 1.09000 * 109.47462 * 65.58018 * 12 11 10 35 35 H 1.08994 * 109.47394 * 185.58610 * 12 11 10 36 36 H 0.96997 * 119.99747 * 355.02465 * 13 12 11 37 37 H 0.97000 * 120.00033 * 180.02562 * 17 16 14 38 38 H 1.09005 * 109.52139 * 57.01319 * 22 11 10 39 39 H 1.08989 * 109.52613 * 177.20523 * 22 11 10 40 40 H 1.09003 * 109.45881 * 182.44648 * 23 22 11 41 41 H 1.09005 * 109.47065 * 62.44807 * 23 22 11 42 42 H 1.09000 * 109.48049 * 178.86097 * 25 24 23 43 43 H 1.08998 * 109.48345 * 58.83381 * 25 24 23 44 44 H 1.09001 * 109.52232 * 297.69516 * 26 25 24 45 45 H 1.09001 * 109.56699 * 177.54358 * 26 25 24 46 46 H 1.08010 * 119.81082 * 0.02847 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4652 1.2584 -0.0005 5 6 4.2228 0.0615 -0.0005 6 8 5.4434 0.0884 -0.0005 7 6 3.4917 -1.2150 0.0006 8 6 4.2128 -2.4993 0.0001 9 8 5.4289 -2.5139 -0.0008 10 7 3.5250 -3.6583 0.0007 11 6 4.2374 -4.9329 -0.1173 12 6 5.0948 -4.9247 -1.3844 13 7 4.2541 -4.6048 -2.5408 14 6 4.8223 -4.4397 -3.7757 15 1 5.8903 -4.5448 -3.8971 16 6 4.0258 -4.1361 -4.8713 17 7 2.7243 -4.0075 -4.7232 18 14 4.8009 -3.9115 -6.5559 19 1 5.4945 -5.1632 -6.9525 20 1 3.7433 -3.5950 -7.5492 21 1 5.7810 -2.7971 -6.5053 22 6 3.2257 -6.0807 -0.1906 23 6 2.4264 -6.1277 1.1165 24 8 3.3234 -6.2846 2.2177 25 6 4.2622 -5.2169 2.3623 26 6 5.1352 -5.1334 1.1075 27 6 2.1124 -1.1772 -0.0048 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.5445 2.1029 0.0004 32 1 3.9611 2.2179 -0.0009 33 1 2.5585 -3.6487 0.0833 34 1 5.8796 -4.1746 -1.2873 35 1 5.5462 -5.9069 -1.5241 36 1 3.2950 -4.5100 -2.4317 37 1 2.1676 -3.7957 -5.4888 38 1 2.5482 -5.9160 -1.0285 39 1 3.7541 -7.0239 -0.3282 40 1 1.7342 -6.9693 1.0887 41 1 1.8661 -5.2000 1.2334 42 1 4.8925 -5.4024 3.2321 43 1 3.7263 -4.2772 2.4955 44 1 5.7023 -6.0576 0.9962 45 1 5.8230 -4.2925 1.1966 46 1 1.5499 -2.0993 -0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717266249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:58 Heat of formation + Delta-G solvation = -84.267424 kcal Electronic energy + Delta-G solvation = -30779.963373 eV Core-core repulsion = 26669.855529 eV Total energy + Delta-G solvation = -4110.107844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.12937 -41.35055 -39.43268 -38.70660 -37.11735 -35.46011 -34.02830 -33.36753 -32.57392 -32.06910 -31.63707 -28.21582 -27.65257 -25.91258 -25.37526 -24.60811 -23.83118 -23.05066 -22.16228 -20.38962 -19.29643 -19.23155 -18.27512 -17.80749 -17.18008 -16.98764 -16.82411 -16.71639 -16.66076 -16.22915 -15.87910 -15.58752 -15.42507 -15.24767 -15.01089 -14.86898 -14.70485 -14.19454 -14.14707 -13.81549 -13.60240 -13.46620 -13.23539 -13.17441 -13.04163 -12.84507 -12.78624 -12.64567 -12.31419 -12.16808 -11.97315 -11.65388 -11.36950 -11.05583 -10.80346 -10.65870 -10.55261 -10.18977 -9.88421 -8.99854 -8.94529 -7.97826 -5.22024 -0.10657 0.41632 1.40057 1.43748 1.49355 1.59319 2.00762 2.24220 2.52736 2.90200 2.97201 3.32533 3.34796 3.59156 3.71817 3.79256 3.82952 3.88840 3.95461 4.01215 4.23494 4.27228 4.35308 4.43988 4.46118 4.58207 4.66849 4.69076 4.76355 4.80391 4.82525 4.85572 4.87909 4.90929 5.08787 5.12010 5.17920 5.22734 5.38862 5.44320 5.68015 5.75251 5.83588 6.25912 6.26168 6.73153 7.14700 7.33813 7.51489 8.05133 8.38831 9.24680 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.005822 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.287714 B = 4808.451564 C = 6906.836577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.459 5.459 3 C 0.167 3.833 4 C -0.305 4.305 5 C 0.376 3.624 6 O -0.570 6.570 7 C -0.349 4.349 8 C 0.575 3.425 9 O -0.564 6.564 10 N -0.703 5.703 11 C 0.184 3.816 12 C 0.142 3.858 13 N -0.721 5.721 14 C -0.247 4.247 15 H 0.053 0.947 16 C -0.062 4.062 17 N -0.955 5.955 18 Si 0.962 3.038 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.294 1.294 22 C -0.146 4.146 23 C 0.065 3.935 24 O -0.390 6.390 25 C 0.077 3.923 26 C -0.160 4.160 27 C 0.212 3.788 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.228 0.772 32 H 0.158 0.842 33 H 0.403 0.597 34 H 0.010 0.990 35 H 0.016 0.984 36 H 0.380 0.620 37 H 0.253 0.747 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.385 6.443 16.695 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.142 5.142 3 C 0.041 3.959 4 C -0.328 4.328 5 C 0.269 3.731 6 O -0.459 6.459 7 C -0.360 4.360 8 C 0.364 3.636 9 O -0.442 6.442 10 N -0.358 5.358 11 C 0.098 3.902 12 C 0.015 3.985 13 N -0.364 5.364 14 C -0.379 4.379 15 H 0.071 0.929 16 C -0.255 4.255 17 N -0.605 5.605 18 Si 0.792 3.208 19 H -0.205 1.205 20 H -0.208 1.208 21 H -0.222 1.222 22 C -0.184 4.184 23 C -0.011 4.011 24 O -0.309 6.309 25 C 0.000 4.000 26 C -0.199 4.199 27 C 0.077 3.923 28 H 0.110 0.890 29 H 0.133 0.867 30 H 0.147 0.853 31 H 0.244 0.756 32 H 0.175 0.825 33 H 0.240 0.760 34 H 0.028 0.972 35 H 0.034 0.966 36 H 0.214 0.786 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.086 0.914 42 H 0.123 0.877 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.018 6.315 16.677 23.971 hybrid contribution 0.764 0.404 -1.690 1.898 sum -15.255 6.719 14.987 22.416 Atomic orbital electron populations 1.23033 0.72021 1.08541 1.06175 1.43291 1.11016 1.03540 1.56319 1.22454 0.93041 0.90284 0.90108 1.22377 0.95059 0.99546 1.15865 1.19090 0.89014 0.89661 0.75325 1.90755 1.17453 1.90145 1.47539 1.22343 0.94556 0.95692 1.23406 1.17811 0.86784 0.83715 0.75240 1.90739 1.15683 1.87496 1.50316 1.45608 1.09991 1.04402 1.75763 1.20357 0.92818 0.83560 0.93478 1.21085 0.93907 0.96530 0.87026 1.42101 1.06198 1.84957 1.03161 1.19429 0.92027 1.39221 0.87202 0.92935 1.25289 0.96229 1.03229 1.00733 1.69718 1.03529 1.56880 1.30414 0.85391 0.77136 0.77745 0.80547 1.20455 1.20758 1.22162 1.22409 0.98559 0.97288 1.00180 1.22769 0.91105 1.03700 0.83547 1.87902 1.47477 1.46070 1.49414 1.22441 0.90734 0.90263 0.96533 1.22489 0.99214 1.02814 0.95410 1.22528 0.91410 0.91496 0.86835 0.89036 0.86704 0.85344 0.75597 0.82485 0.75966 0.97172 0.96583 0.78606 0.93851 0.90082 0.90075 0.86202 0.91405 0.87652 0.92879 0.90416 0.91655 0.78301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.03 10.53 127.77 1.34 1.32 16 2 N -0.46 -5.12 2.97 -547.46 -1.63 -6.75 16 3 C 0.17 2.08 10.17 83.34 0.85 2.93 16 4 C -0.31 -7.79 10.01 22.34 0.22 -7.57 16 5 C 0.38 15.17 6.96 25.44 0.18 15.35 16 6 O -0.57 -30.55 16.41 13.54 0.22 -30.33 16 7 C -0.35 -12.20 6.05 -18.63 -0.11 -12.32 16 8 C 0.58 23.96 7.18 86.62 0.62 24.58 16 9 O -0.56 -30.12 11.88 15.04 0.18 -29.95 16 10 N -0.70 -22.89 3.70 -425.75 -1.58 -24.46 16 11 C 0.18 6.45 0.32 3.72 0.00 6.45 16 12 C 0.14 6.77 4.79 86.38 0.41 7.18 16 13 N -0.72 -38.58 5.21 -343.47 -1.79 -40.37 16 14 C -0.25 -14.99 9.99 84.03 0.84 -14.15 16 15 H 0.05 3.27 7.83 -2.91 -0.02 3.25 16 16 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 17 N -0.95 -56.73 13.06 21.65 0.28 -56.45 16 18 Si 0.96 48.65 29.55 68.60 2.03 50.67 16 19 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 21 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 22 C -0.15 -4.11 4.84 30.75 0.15 -3.96 16 23 C 0.07 1.33 6.67 72.08 0.48 1.81 16 24 O -0.39 -9.51 10.77 -148.98 -1.60 -11.12 16 25 C 0.08 1.96 6.68 72.01 0.48 2.44 16 26 C -0.16 -5.25 4.82 30.68 0.15 -5.11 16 27 C 0.21 4.14 9.79 84.25 0.82 4.97 16 28 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.11 -0.47 7.96 -2.39 -0.02 -0.49 16 30 H 0.13 -0.88 7.96 -2.39 -0.02 -0.90 16 31 H 0.23 -0.01 7.97 -2.92 -0.02 -0.04 16 32 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.40 9.47 5.49 -92.70 -0.51 8.96 16 34 H 0.01 0.58 6.25 -2.39 -0.01 0.56 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.38 19.90 6.51 -92.71 -0.60 19.30 16 37 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 38 H 0.08 2.44 7.22 -2.38 -0.02 2.43 16 39 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.07 7.01 -2.38 -0.02 1.05 16 42 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.05 1.29 7.75 -2.39 -0.02 1.28 16 44 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.06 2.59 6.26 -2.39 -0.01 2.57 16 46 H 0.20 2.29 6.37 -2.91 -0.02 2.27 16 Total: -1.00 -104.10 368.97 2.93 -101.17 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.09 Total: 26.87 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 6.91 Total: 20.71 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.71 Total: -128.03 kcal Atomic # 8 Polarization: -70.19 SS G_CDS: -1.20 Total: -71.39 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.67 kcal Total: -104.10 2.93 -101.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717266249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.902 kcal (2) G-P(sol) polarization free energy of solvation -104.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds