Wall clock time and date at job start Tue Mar 31 2020 18:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99984 * 2 1 4 4 H 1.07996 * 120.00328 * 198.76955 * 3 2 1 5 5 C 1.38813 * 119.99939 * 18.76791 * 3 2 1 6 6 N 1.31625 * 120.00050 * 16.24073 * 5 3 2 7 7 Si 1.86801 * 120.00117 * 196.23380 * 5 3 2 8 8 H 1.48506 * 109.46946 * 94.98382 * 7 5 3 9 9 H 1.48501 * 109.47124 * 214.98371 * 7 5 3 10 10 H 1.48497 * 109.47162 * 334.98711 * 7 5 3 11 11 C 1.46493 * 120.00168 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47535 * 270.00161 * 11 2 1 13 13 O 1.42902 * 109.47192 * 65.00022 * 12 11 2 14 14 C 1.42901 * 114.00450 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47416 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47417 * 64.99160 * 15 14 13 17 17 C 1.34773 * 120.00212 * 179.97438 * 16 15 14 18 18 O 1.21356 * 119.99762 * 0.02562 * 17 16 15 19 19 C 1.49354 * 119.99928 * 180.02562 * 17 16 15 20 20 O 1.21370 * 120.00227 * 359.97438 * 19 17 16 21 21 N 1.34781 * 119.99808 * 180.02562 * 19 17 16 22 22 C 1.39722 * 120.00146 * 185.09643 * 21 19 17 23 23 C 1.38929 * 120.07996 * 144.48283 * 22 21 19 24 24 C 1.38091 * 119.92453 * 179.97438 * 23 22 21 25 25 C 1.38294 * 120.07730 * 0.02562 * 24 23 22 26 26 C 1.38297 * 120.15287 * 359.97438 * 25 24 23 27 27 C 1.38088 * 120.07271 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.46974 * 274.32780 * 1 2 3 29 29 H 1.08999 * 109.47158 * 34.33191 * 1 2 3 30 30 H 1.09005 * 109.46950 * 154.32802 * 1 2 3 31 31 H 0.96998 * 120.00099 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.47494 * 150.00034 * 11 2 1 33 33 H 1.09002 * 109.47130 * 30.00433 * 11 2 1 34 34 H 1.09005 * 109.47451 * 304.99911 * 12 11 2 35 35 H 1.09004 * 109.47819 * 184.99952 * 12 11 2 36 36 H 1.08998 * 109.47696 * 59.99292 * 14 13 12 37 37 H 1.09007 * 109.46723 * 299.99382 * 14 13 12 38 38 H 1.08998 * 109.46847 * 304.99636 * 15 14 13 39 39 H 1.08993 * 109.47222 * 184.99692 * 15 14 13 40 40 H 0.97005 * 119.99776 * 0.02562 * 16 15 14 41 41 H 0.96999 * 119.99837 * 5.08786 * 21 19 17 42 42 H 1.08001 * 120.03463 * 359.70654 * 23 22 21 43 43 H 1.08000 * 119.96197 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.92710 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.96341 * 180.02562 * 26 25 24 46 46 H 1.08008 * 120.03680 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1866 1.2108 -0.3009 5 6 1.5110 2.3561 0.3868 6 7 0.3744 2.2978 1.0481 7 14 2.2645 4.0135 -0.0310 8 1 1.6694 4.5240 -1.2922 9 1 1.9915 4.9729 1.0691 10 1 3.7317 3.8612 -0.2023 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7098 1.4432 13 8 1.2061 -1.9927 2.0822 14 6 1.3324 -2.4151 3.4415 15 6 -0.0566 -2.6892 4.0216 16 7 -0.6646 -3.8216 3.3187 17 6 -1.8967 -4.2457 3.6631 18 8 -2.5026 -3.6891 4.5552 19 6 -2.5163 -5.4005 2.9468 20 8 -1.9105 -5.9569 2.0542 21 7 -3.7486 -5.8243 3.2908 22 6 -4.2853 -6.9688 2.6957 23 6 -5.0923 -7.8248 3.4348 24 6 -5.6215 -8.9548 2.8433 25 6 -5.3486 -9.2351 1.5168 26 6 -4.5458 -8.3853 0.7781 27 6 -4.0133 -7.2535 1.3633 28 1 -0.3633 0.0776 1.0248 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3633 -0.9263 -0.4452 31 1 -0.0717 3.1155 1.3187 32 1 3.1500 -1.1386 -0.5133 33 1 1.6085 -2.0285 -0.5130 34 1 2.9643 -0.9122 1.9820 35 1 3.0733 -2.6058 1.4449 36 1 1.8207 -1.6320 4.0215 37 1 1.9300 -3.3257 3.4849 38 1 -0.6830 -1.8059 3.8974 39 1 0.0326 -2.9252 5.0819 40 1 -0.1801 -4.2667 2.6058 41 1 -4.2628 -5.3347 3.9517 42 1 -5.3019 -7.6089 4.4721 43 1 -6.2485 -9.6208 3.4174 44 1 -5.7635 -10.1198 1.0567 45 1 -4.3351 -8.6069 -0.2577 46 1 -3.3860 -6.5904 0.7860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717712027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:14 Heat of formation + Delta-G solvation = -52.504689 kcal Electronic energy + Delta-G solvation = -28075.537163 eV Core-core repulsion = 23966.806655 eV Total energy + Delta-G solvation = -4108.730508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.23478 -39.60663 -38.34937 -37.66306 -35.73655 -35.21631 -34.39000 -31.49205 -31.22292 -30.17762 -29.68414 -27.92061 -25.72631 -25.34724 -23.24074 -23.02121 -22.65920 -21.79022 -20.52052 -20.31988 -19.00317 -17.80572 -16.99697 -16.86199 -16.45535 -16.22181 -15.94547 -15.87466 -15.16946 -14.96082 -14.69142 -14.42272 -14.21651 -14.05304 -13.78220 -13.64288 -13.36340 -13.21757 -13.05387 -12.62826 -12.25310 -12.18417 -11.71119 -11.60494 -11.48859 -11.43447 -10.92633 -10.89165 -10.75642 -10.70406 -10.50716 -10.06743 -9.91091 -9.81256 -9.76034 -9.28624 -9.23083 -9.05501 -8.53210 -8.46291 -6.71204 -5.65563 -3.07414 0.75979 1.09994 1.39346 2.10657 2.99097 3.39368 3.40883 3.47388 3.48758 3.52299 4.08039 4.26689 4.55277 4.59189 4.64965 4.86115 5.01603 5.09520 5.18942 5.21939 5.25784 5.45426 5.54996 5.57067 5.62278 5.70246 5.89833 5.93114 5.98449 6.04098 6.13741 6.15885 6.19463 6.22977 6.24938 6.53370 6.64954 6.75261 6.77098 6.95579 7.15997 7.49969 7.52854 7.73895 7.81353 7.83259 7.96411 8.44689 9.30505 9.95515 10.44597 11.39109 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002076 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.280929 B =13483.221024 C =13786.665295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.068 0.932 5 C -0.001 4.001 6 N -0.902 5.902 7 Si 0.901 3.099 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.152 3.848 12 C 0.042 3.958 13 O -0.367 6.367 14 C 0.049 3.951 15 C 0.122 3.878 16 N -0.682 5.682 17 C 0.508 3.492 18 O -0.522 6.522 19 C 0.511 3.489 20 O -0.497 6.497 21 N -0.648 5.648 22 C 0.140 3.860 23 C -0.140 4.140 24 C -0.104 4.104 25 C -0.133 4.133 26 C -0.102 4.102 27 C -0.119 4.119 28 H 0.031 0.969 29 H 0.038 0.962 30 H -0.006 1.006 31 H 0.250 0.750 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.026 0.974 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.417 0.583 41 H 0.423 0.577 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.410 -22.570 6.058 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.319 5.319 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.199 4.199 6 N -0.547 5.547 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.024 3.976 12 C -0.037 4.037 13 O -0.286 6.286 14 C -0.029 4.029 15 C -0.001 4.001 16 N -0.335 5.335 17 C 0.287 3.713 18 O -0.399 6.399 19 C 0.293 3.707 20 O -0.370 6.370 21 N -0.295 5.295 22 C 0.046 3.954 23 C -0.161 4.161 24 C -0.122 4.122 25 C -0.152 4.152 26 C -0.120 4.120 27 C -0.139 4.139 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.013 0.987 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.253 0.747 41 H 0.261 0.739 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.619 -22.323 6.039 24.680 hybrid contribution 0.642 1.046 0.158 1.237 sum -7.977 -21.278 6.197 23.554 Atomic orbital electron populations 1.20696 0.82123 0.94938 0.99333 1.43932 1.02180 1.00267 1.85511 1.19232 0.96137 0.84886 1.38219 0.91389 1.24934 0.97910 0.98128 0.98925 1.70136 1.18437 1.26277 1.39885 0.86287 0.78524 0.84418 0.77606 1.21634 1.21930 1.20587 1.20894 0.96494 0.88874 0.91367 1.23539 0.84935 0.96988 0.98240 1.88016 1.30667 1.87358 1.22579 1.22613 0.95098 0.98808 0.86360 1.21612 0.94044 0.88913 0.95542 1.45715 1.16196 1.33296 1.38290 1.19729 0.82928 0.84397 0.84203 1.90784 1.61772 1.56920 1.30438 1.20399 0.81806 0.84721 0.83811 1.90779 1.61929 1.55811 1.28461 1.43127 1.16387 1.26633 1.43314 1.17778 0.97421 0.87946 0.92256 1.20952 1.00649 0.94745 0.99704 1.20949 0.99547 0.96498 0.95218 1.21200 0.99328 1.00063 0.94605 1.21109 0.96643 0.94134 1.00150 1.21384 1.00526 0.98864 0.93081 0.95114 0.94298 0.98715 0.93928 0.92271 0.93699 0.93243 0.95554 0.91587 0.93519 0.89296 0.89755 0.74664 0.73851 0.85461 0.85560 0.85888 0.85488 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.50 8.62 59.85 0.52 5.02 16 2 N -0.60 -15.25 2.89 -181.12 -0.52 -15.78 16 3 C -0.26 -7.05 9.68 -15.06 -0.15 -7.19 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 -0.02 5.04 -17.43 -0.09 -0.11 16 6 N -0.90 -26.76 10.65 55.49 0.59 -26.17 16 7 Si 0.90 22.06 29.58 -169.99 -5.03 17.03 16 8 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.15 3.11 6.11 -4.05 -0.02 3.09 16 12 C 0.04 0.77 6.28 37.15 0.23 1.01 16 13 O -0.37 -6.74 9.85 -35.23 -0.35 -7.09 16 14 C 0.05 0.68 6.07 37.16 0.23 0.90 16 15 C 0.12 1.61 6.06 -4.04 -0.02 1.59 16 16 N -0.68 -8.91 5.50 -60.77 -0.33 -9.24 16 17 C 0.51 6.82 7.89 -11.63 -0.09 6.73 16 18 O -0.52 -7.89 16.48 5.49 0.09 -7.79 16 19 C 0.51 6.39 7.73 -11.63 -0.09 6.30 16 20 O -0.50 -7.03 13.92 5.48 0.08 -6.95 16 21 N -0.65 -6.73 5.32 -10.29 -0.05 -6.78 16 22 C 0.14 1.44 6.29 -83.75 -0.53 0.91 16 23 C -0.14 -1.15 9.97 -39.38 -0.39 -1.54 16 24 C -0.10 -0.75 10.04 -39.61 -0.40 -1.15 16 25 C -0.13 -1.00 10.04 -39.54 -0.40 -1.40 16 26 C -0.10 -0.90 10.04 -39.61 -0.40 -1.29 16 27 C -0.12 -1.29 8.70 -39.38 -0.34 -1.63 16 28 H 0.03 0.86 7.48 -51.93 -0.39 0.47 16 29 H 0.04 1.08 7.08 -51.93 -0.37 0.71 16 30 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 33 H 0.04 0.87 7.86 -51.93 -0.41 0.46 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.42 5.25 7.94 -40.82 -0.32 4.93 16 41 H 0.42 3.67 8.30 -40.82 -0.34 3.33 16 42 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.14 1.72 6.24 -52.48 -0.33 1.39 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -33.49 392.12 -8.32 -41.81 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.76 Total: 3.84 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -1.94 Total: 11.22 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.32 Total: -57.97 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.18 Total: -21.84 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.49 -8.32 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717712027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.695 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds